Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03079

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03077 and MPMX19_03078 are separated by 60 nucleotidesMPMX19_03078 and MPMX19_03079 overlap by 4 nucleotidesMPMX19_03079 and MPMX19_03080 are separated by 57 nucleotides MPMX19_03077: MPMX19_03077 - N-acetylglucosamine-6-O-sulfatase, at 344,027 to 346,069 _03077 MPMX19_03078: MPMX19_03078 - hypothetical protein, at 346,130 to 346,315 _03078 MPMX19_03079: MPMX19_03079 - hypothetical protein, at 346,312 to 347,457 _03079 MPMX19_03080: MPMX19_03080 - Ferrichrome receptor FcuA, at 347,515 to 349,992 _03080 Position (kb) 346 347 348Strain fitness (log2 ratio) -2 -1 0 1 2at 345.326 kb on + strand, within MPMX19_03077at 345.326 kb on + strand, within MPMX19_03077at 345.326 kb on + strand, within MPMX19_03077at 345.327 kb on - strand, within MPMX19_03077at 345.327 kb on - strand, within MPMX19_03077at 345.578 kb on + strand, within MPMX19_03077at 345.578 kb on + strand, within MPMX19_03077at 345.578 kb on + strand, within MPMX19_03077at 345.578 kb on + strand, within MPMX19_03077at 345.578 kb on + strand, within MPMX19_03077at 345.578 kb on + strand, within MPMX19_03077at 345.579 kb on - strand, within MPMX19_03077at 345.579 kb on - strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.671 kb on + strand, within MPMX19_03077at 345.672 kb on - strand, within MPMX19_03077at 345.672 kb on - strand, within MPMX19_03077at 345.672 kb on - strand, within MPMX19_03077at 345.672 kb on - strand, within MPMX19_03077at 345.672 kb on - strand, within MPMX19_03077at 345.674 kb on + strand, within MPMX19_03077at 345.674 kb on + strand, within MPMX19_03077at 345.674 kb on + strand, within MPMX19_03077at 345.674 kb on + strand, within MPMX19_03077at 345.675 kb on - strand, within MPMX19_03077at 345.675 kb on - strand, within MPMX19_03077at 345.683 kb on + strand, within MPMX19_03077at 345.683 kb on + strand, within MPMX19_03077at 345.683 kb on + strand, within MPMX19_03077at 345.683 kb on + strand, within MPMX19_03077at 345.692 kb on + strand, within MPMX19_03077at 345.692 kb on + strand, within MPMX19_03077at 345.692 kb on + strand, within MPMX19_03077at 345.692 kb on + strand, within MPMX19_03077at 345.692 kb on + strand, within MPMX19_03077at 345.692 kb on + strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.693 kb on - strand, within MPMX19_03077at 345.825 kb on - strand, within MPMX19_03077at 345.825 kb on - strand, within MPMX19_03077at 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.866 kb on + strandat 345.867 kb on - strandat 345.867 kb on - strandat 345.867 kb on - strandat 345.867 kb on - strandat 345.867 kb on - strandat 345.868 kb on - strandat 345.965 kb on + strandat 345.966 kb on - strandat 345.966 kb on - strandat 345.966 kb on - strandat 346.047 kb on + strandat 346.047 kb on + strandat 346.047 kb on + strandat 346.047 kb on + strandat 346.048 kb on - strandat 346.048 kb on - strandat 346.048 kb on - strandat 346.397 kb on + strandat 346.397 kb on + strandat 346.397 kb on + strandat 346.397 kb on + strandat 346.398 kb on - strandat 346.398 kb on - strandat 346.398 kb on - strandat 346.398 kb on - strandat 346.472 kb on + strand, within MPMX19_03079at 346.473 kb on - strand, within MPMX19_03079at 346.473 kb on - strand, within MPMX19_03079at 346.473 kb on - strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.625 kb on + strand, within MPMX19_03079at 346.797 kb on - strand, within MPMX19_03079at 346.797 kb on - strand, within MPMX19_03079at 346.965 kb on - strand, within MPMX19_03079at 347.243 kb on + strand, within MPMX19_03079at 347.243 kb on + strand, within MPMX19_03079at 347.503 kb on + strandat 347.504 kb on - strandat 347.504 kb on - strandat 347.570 kb on + strandat 347.570 kb on + strandat 347.579 kb on + strandat 347.594 kb on + strandat 347.594 kb on + strandat 347.595 kb on - strandat 347.595 kb on - strandat 347.595 kb on - strandat 347.726 kb on + strandat 347.726 kb on + strandat 347.726 kb on + strandat 347.726 kb on + strandat 347.726 kb on + strandat 347.727 kb on - strandat 347.727 kb on - strandat 347.727 kb on - strandat 347.942 kb on + strand, within MPMX19_03080at 347.942 kb on + strand, within MPMX19_03080at 347.942 kb on + strand, within MPMX19_03080at 347.942 kb on + strand, within MPMX19_03080at 347.943 kb on - strand, within MPMX19_03080at 347.943 kb on - strand, within MPMX19_03080at 347.943 kb on - strand, within MPMX19_03080at 347.990 kb on + strand, within MPMX19_03080at 347.990 kb on + strand, within MPMX19_03080at 347.990 kb on + strand, within MPMX19_03080at 347.990 kb on + strand, within MPMX19_03080at 347.991 kb on + strand, within MPMX19_03080at 347.991 kb on - strand, within MPMX19_03080at 347.991 kb on - strand, within MPMX19_03080at 347.991 kb on - strand, within MPMX19_03080at 348.092 kb on + strand, within MPMX19_03080at 348.092 kb on + strand, within MPMX19_03080at 348.092 kb on + strand, within MPMX19_03080at 348.092 kb on + strand, within MPMX19_03080at 348.093 kb on - strand, within MPMX19_03080at 348.189 kb on - strand, within MPMX19_03080at 348.254 kb on + strand, within MPMX19_03080at 348.255 kb on - strand, within MPMX19_03080at 348.255 kb on - strand, within MPMX19_03080at 348.287 kb on + strand, within MPMX19_03080at 348.287 kb on + strand, within MPMX19_03080at 348.288 kb on - strand, within MPMX19_03080at 348.288 kb on - strand, within MPMX19_03080at 348.371 kb on + strand, within MPMX19_03080at 348.371 kb on + strand, within MPMX19_03080at 348.372 kb on - strand, within MPMX19_03080at 348.372 kb on - strand, within MPMX19_03080at 348.372 kb on - strand, within MPMX19_03080

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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345,326 + MPMX19_03077 0.64 -0.4
345,326 + MPMX19_03077 0.64 +0.4
345,326 + MPMX19_03077 0.64 -0.4
345,327 - MPMX19_03077 0.64 -0.2
345,327 - MPMX19_03077 0.64 -0.0
345,578 + MPMX19_03077 0.76 -0.0
345,578 + MPMX19_03077 0.76 +0.1
345,578 + MPMX19_03077 0.76 +0.6
345,578 + MPMX19_03077 0.76 +1.4
345,578 + MPMX19_03077 0.76 -2.0
345,578 + MPMX19_03077 0.76 -2.0
345,579 - MPMX19_03077 0.76 -2.2
345,579 - MPMX19_03077 0.76 +0.2
345,671 + MPMX19_03077 0.80 -1.5
345,671 + MPMX19_03077 0.80 -1.3
345,671 + MPMX19_03077 0.80 -0.6
345,671 + MPMX19_03077 0.80 -0.7
345,671 + MPMX19_03077 0.80 -1.7
345,671 + MPMX19_03077 0.80 -0.6
345,671 + MPMX19_03077 0.80 +0.9
345,672 - MPMX19_03077 0.81 -0.5
345,672 - MPMX19_03077 0.81 +0.3
345,672 - MPMX19_03077 0.81 -0.2
345,672 - MPMX19_03077 0.81 +0.5
345,672 - MPMX19_03077 0.81 -1.2
345,674 + MPMX19_03077 0.81 -0.7
345,674 + MPMX19_03077 0.81 +0.2
345,674 + MPMX19_03077 0.81 -1.8
345,674 + MPMX19_03077 0.81 -0.4
345,675 - MPMX19_03077 0.81 -0.3
345,675 - MPMX19_03077 0.81 -0.4
345,683 + MPMX19_03077 0.81 -1.2
345,683 + MPMX19_03077 0.81 -0.9
345,683 + MPMX19_03077 0.81 -0.1
345,683 + MPMX19_03077 0.81 -1.5
345,692 + MPMX19_03077 0.81 -0.2
345,692 + MPMX19_03077 0.81 -0.4
345,692 + MPMX19_03077 0.81 +1.6
345,692 + MPMX19_03077 0.81 -0.1
345,692 + MPMX19_03077 0.81 -1.9
345,692 + MPMX19_03077 0.81 -0.4
345,693 - MPMX19_03077 0.82 -0.0
345,693 - MPMX19_03077 0.82 -2.5
345,693 - MPMX19_03077 0.82 -0.0
345,693 - MPMX19_03077 0.82 +0.5
345,693 - MPMX19_03077 0.82 -0.8
345,693 - MPMX19_03077 0.82 +0.2
345,693 - MPMX19_03077 0.82 -0.4
345,693 - MPMX19_03077 0.82 -1.5
345,693 - MPMX19_03077 0.82 -0.8
345,825 - MPMX19_03077 0.88 +0.2
345,825 - MPMX19_03077 0.88 -1.0
345,866 + -1.3
345,866 + +0.3
345,866 + -0.5
345,866 + -0.2
345,866 + +0.2
345,866 + -0.3
345,866 + -1.2
345,866 + -1.5
345,866 + +0.6
345,867 - +1.8
345,867 - -0.4
345,867 - -1.0
345,867 - -0.8
345,867 - +0.6
345,868 - +0.8
345,965 + +0.6
345,966 - +0.6
345,966 - +1.3
345,966 - -2.4
346,047 + -1.7
346,047 + -1.4
346,047 + +0.1
346,047 + -2.6
346,048 - +0.8
346,048 - -2.4
346,048 - +1.9
346,397 + -0.5
346,397 + -0.2
346,397 + -1.6
346,397 + +0.1
346,398 - -0.4
346,398 - +1.2
346,398 - -1.8
346,398 - -1.9
346,472 + MPMX19_03079 0.14 -1.0
346,473 - MPMX19_03079 0.14 -2.5
346,473 - MPMX19_03079 0.14 +1.9
346,473 - MPMX19_03079 0.14 -0.5
346,517 + MPMX19_03079 0.18 +0.4
346,517 + MPMX19_03079 0.18 -2.5
346,517 + MPMX19_03079 0.18 +1.2
346,517 + MPMX19_03079 0.18 -0.6
346,517 + MPMX19_03079 0.18 -0.6
346,517 + MPMX19_03079 0.18 +0.9
346,517 + MPMX19_03079 0.18 -1.4
346,517 + MPMX19_03079 0.18 -0.2
346,517 + MPMX19_03079 0.18 +0.6
346,517 + MPMX19_03079 0.18 -0.4
346,518 - MPMX19_03079 0.18 -1.0
346,518 - MPMX19_03079 0.18 -0.6
346,518 - MPMX19_03079 0.18 -0.4
346,518 - MPMX19_03079 0.18 -0.7
346,518 - MPMX19_03079 0.18 -0.7
346,518 - MPMX19_03079 0.18 -1.5
346,518 - MPMX19_03079 0.18 -0.6
346,518 - MPMX19_03079 0.18 -0.8
346,625 + MPMX19_03079 0.27 -1.0
346,797 - MPMX19_03079 0.42 +0.4
346,797 - MPMX19_03079 0.42 +0.6
346,965 - MPMX19_03079 0.57 -0.6
347,243 + MPMX19_03079 0.81 -0.3
347,243 + MPMX19_03079 0.81 -0.2
347,503 + -0.5
347,504 - +0.3
347,504 - +0.5
347,570 + -0.4
347,570 + -0.1
347,579 + -1.1
347,594 + -1.5
347,594 + -1.5
347,595 - +0.4
347,595 - -1.0
347,595 - -0.3
347,726 + -1.2
347,726 + +0.1
347,726 + -0.4
347,726 + -0.8
347,726 + -1.4
347,727 - -1.1
347,727 - -0.3
347,727 - -0.7
347,942 + MPMX19_03080 0.17 +0.9
347,942 + MPMX19_03080 0.17 -1.6
347,942 + MPMX19_03080 0.17 +0.1
347,942 + MPMX19_03080 0.17 -0.2
347,943 - MPMX19_03080 0.17 +0.7
347,943 - MPMX19_03080 0.17 -1.5
347,943 - MPMX19_03080 0.17 -0.7
347,990 + MPMX19_03080 0.19 +1.5
347,990 + MPMX19_03080 0.19 -1.4
347,990 + MPMX19_03080 0.19 -0.7
347,990 + MPMX19_03080 0.19 -0.6
347,991 + MPMX19_03080 0.19 +0.3
347,991 - MPMX19_03080 0.19 -1.0
347,991 - MPMX19_03080 0.19 +0.4
347,991 - MPMX19_03080 0.19 -0.6
348,092 + MPMX19_03080 0.23 -0.4
348,092 + MPMX19_03080 0.23 +0.2
348,092 + MPMX19_03080 0.23 -0.8
348,092 + MPMX19_03080 0.23 +0.2
348,093 - MPMX19_03080 0.23 -1.7
348,189 - MPMX19_03080 0.27 -0.1
348,254 + MPMX19_03080 0.30 +2.7
348,255 - MPMX19_03080 0.30 -0.8
348,255 - MPMX19_03080 0.30 +0.7
348,287 + MPMX19_03080 0.31 -1.5
348,287 + MPMX19_03080 0.31 -2.2
348,288 - MPMX19_03080 0.31 +0.5
348,288 - MPMX19_03080 0.31 +0.7
348,371 + MPMX19_03080 0.35 +0.6
348,371 + MPMX19_03080 0.35 -0.4
348,372 - MPMX19_03080 0.35 -0.7
348,372 - MPMX19_03080 0.35 -0.9
348,372 - MPMX19_03080 0.35 -0.3

Or see this region's nucleotide sequence