Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03073

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03071 and MPMX19_03072 are separated by 61 nucleotidesMPMX19_03072 and MPMX19_03073 are separated by 39 nucleotidesMPMX19_03073 and MPMX19_03074 are separated by 154 nucleotides MPMX19_03071: MPMX19_03071 - HTH-type transcriptional regulatory protein GabR, at 336,211 to 337,701 _03071 MPMX19_03072: MPMX19_03072 - hypothetical protein, at 337,763 to 337,870 _03072 MPMX19_03073: MPMX19_03073 - hypothetical protein, at 337,910 to 338,584 _03073 MPMX19_03074: MPMX19_03074 - Vitamin B12 transporter BtuB, at 338,739 to 340,796 _03074 Position (kb) 337 338 339Strain fitness (log2 ratio) -2 -1 0 1 2at 336.983 kb on + strand, within MPMX19_03071at 336.983 kb on + strand, within MPMX19_03071at 337.126 kb on + strand, within MPMX19_03071at 337.126 kb on + strand, within MPMX19_03071at 337.126 kb on + strand, within MPMX19_03071at 337.127 kb on - strand, within MPMX19_03071at 337.127 kb on - strand, within MPMX19_03071at 337.127 kb on - strand, within MPMX19_03071at 337.201 kb on + strand, within MPMX19_03071at 337.201 kb on + strand, within MPMX19_03071at 337.201 kb on + strand, within MPMX19_03071at 337.201 kb on + strand, within MPMX19_03071at 337.201 kb on + strand, within MPMX19_03071at 337.201 kb on + strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.202 kb on - strand, within MPMX19_03071at 337.249 kb on + strand, within MPMX19_03071at 337.249 kb on + strand, within MPMX19_03071at 337.249 kb on + strand, within MPMX19_03071at 337.249 kb on + strand, within MPMX19_03071at 337.250 kb on - strand, within MPMX19_03071at 337.250 kb on - strand, within MPMX19_03071at 337.250 kb on - strand, within MPMX19_03071at 337.274 kb on + strand, within MPMX19_03071at 337.275 kb on - strand, within MPMX19_03071at 337.375 kb on + strand, within MPMX19_03071at 337.375 kb on + strand, within MPMX19_03071at 337.375 kb on + strand, within MPMX19_03071at 337.375 kb on + strand, within MPMX19_03071at 337.376 kb on + strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.376 kb on - strand, within MPMX19_03071at 337.399 kb on + strand, within MPMX19_03071at 337.399 kb on + strand, within MPMX19_03071at 337.399 kb on + strand, within MPMX19_03071at 337.399 kb on + strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.400 kb on - strand, within MPMX19_03071at 337.525 kb on - strand, within MPMX19_03071at 337.525 kb on - strand, within MPMX19_03071at 337.582 kb on + strandat 337.582 kb on + strandat 337.583 kb on - strandat 337.630 kb on + strandat 337.630 kb on + strandat 337.630 kb on + strandat 337.631 kb on - strandat 337.631 kb on - strandat 337.700 kb on - strandat 337.714 kb on + strandat 337.715 kb on - strandat 337.715 kb on - strandat 337.715 kb on - strandat 337.771 kb on + strandat 337.772 kb on - strandat 337.772 kb on - strandat 337.772 kb on - strandat 337.777 kb on + strand, within MPMX19_03072at 337.777 kb on + strand, within MPMX19_03072at 337.778 kb on - strand, within MPMX19_03072at 337.868 kb on + strandat 337.868 kb on + strandat 337.868 kb on + strandat 337.868 kb on + strandat 337.868 kb on + strandat 337.869 kb on - strandat 337.869 kb on - strandat 337.869 kb on - strandat 337.879 kb on + strandat 337.879 kb on + strandat 337.928 kb on + strandat 337.928 kb on + strandat 337.928 kb on + strandat 337.928 kb on + strandat 337.928 kb on + strandat 337.929 kb on - strandat 337.929 kb on - strandat 337.972 kb on + strandat 338.027 kb on + strand, within MPMX19_03073at 338.027 kb on + strand, within MPMX19_03073at 338.465 kb on + strand, within MPMX19_03073at 338.465 kb on + strand, within MPMX19_03073at 338.465 kb on + strand, within MPMX19_03073at 338.466 kb on - strand, within MPMX19_03073at 338.466 kb on - strand, within MPMX19_03073at 338.466 kb on - strand, within MPMX19_03073at 338.723 kb on + strandat 338.763 kb on - strandat 339.027 kb on + strand, within MPMX19_03074at 339.027 kb on + strand, within MPMX19_03074at 339.027 kb on + strand, within MPMX19_03074at 339.027 kb on + strand, within MPMX19_03074at 339.028 kb on - strand, within MPMX19_03074at 339.028 kb on - strand, within MPMX19_03074at 339.028 kb on - strand, within MPMX19_03074at 339.028 kb on - strand, within MPMX19_03074at 339.029 kb on + strand, within MPMX19_03074at 339.030 kb on - strand, within MPMX19_03074at 339.084 kb on + strand, within MPMX19_03074at 339.084 kb on + strand, within MPMX19_03074at 339.084 kb on + strand, within MPMX19_03074at 339.084 kb on + strand, within MPMX19_03074at 339.084 kb on + strand, within MPMX19_03074at 339.084 kb on + strand, within MPMX19_03074at 339.084 kb on + strand, within MPMX19_03074at 339.085 kb on - strand, within MPMX19_03074at 339.085 kb on - strand, within MPMX19_03074at 339.085 kb on - strand, within MPMX19_03074at 339.085 kb on - strand, within MPMX19_03074at 339.085 kb on - strand, within MPMX19_03074at 339.085 kb on - strand, within MPMX19_03074at 339.162 kb on + strand, within MPMX19_03074at 339.162 kb on + strand, within MPMX19_03074at 339.162 kb on + strand, within MPMX19_03074at 339.162 kb on + strand, within MPMX19_03074at 339.163 kb on - strand, within MPMX19_03074at 339.303 kb on + strand, within MPMX19_03074at 339.303 kb on + strand, within MPMX19_03074at 339.303 kb on + strand, within MPMX19_03074at 339.304 kb on - strand, within MPMX19_03074at 339.304 kb on - strand, within MPMX19_03074at 339.304 kb on - strand, within MPMX19_03074at 339.304 kb on - strand, within MPMX19_03074at 339.304 kb on - strand, within MPMX19_03074at 339.336 kb on + strand, within MPMX19_03074at 339.336 kb on + strand, within MPMX19_03074at 339.336 kb on + strand, within MPMX19_03074at 339.337 kb on - strand, within MPMX19_03074at 339.337 kb on - strand, within MPMX19_03074at 339.337 kb on - strand, within MPMX19_03074at 339.337 kb on - strand, within MPMX19_03074at 339.337 kb on - strand, within MPMX19_03074at 339.337 kb on - strand, within MPMX19_03074at 339.499 kb on - strand, within MPMX19_03074at 339.499 kb on - strand, within MPMX19_03074at 339.499 kb on - strand, within MPMX19_03074at 339.576 kb on + strand, within MPMX19_03074at 339.576 kb on + strand, within MPMX19_03074at 339.576 kb on + strand, within MPMX19_03074at 339.576 kb on + strand, within MPMX19_03074at 339.577 kb on - strand, within MPMX19_03074at 339.577 kb on - strand, within MPMX19_03074

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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336,983 + MPMX19_03071 0.52 -1.7
336,983 + MPMX19_03071 0.52 -1.2
337,126 + MPMX19_03071 0.61 -1.9
337,126 + MPMX19_03071 0.61 -0.0
337,126 + MPMX19_03071 0.61 +1.0
337,127 - MPMX19_03071 0.61 -0.8
337,127 - MPMX19_03071 0.61 -0.2
337,127 - MPMX19_03071 0.61 -0.2
337,201 + MPMX19_03071 0.66 +0.7
337,201 + MPMX19_03071 0.66 +0.8
337,201 + MPMX19_03071 0.66 -0.2
337,201 + MPMX19_03071 0.66 +0.0
337,201 + MPMX19_03071 0.66 -1.2
337,201 + MPMX19_03071 0.66 -2.2
337,202 - MPMX19_03071 0.66 -0.5
337,202 - MPMX19_03071 0.66 -1.2
337,202 - MPMX19_03071 0.66 -0.2
337,202 - MPMX19_03071 0.66 +0.7
337,202 - MPMX19_03071 0.66 -1.5
337,202 - MPMX19_03071 0.66 -1.5
337,202 - MPMX19_03071 0.66 +0.4
337,249 + MPMX19_03071 0.70 +0.7
337,249 + MPMX19_03071 0.70 -1.6
337,249 + MPMX19_03071 0.70 +1.3
337,249 + MPMX19_03071 0.70 -1.0
337,250 - MPMX19_03071 0.70 -1.2
337,250 - MPMX19_03071 0.70 +1.4
337,250 - MPMX19_03071 0.70 -1.2
337,274 + MPMX19_03071 0.71 -0.8
337,275 - MPMX19_03071 0.71 -1.4
337,375 + MPMX19_03071 0.78 +2.2
337,375 + MPMX19_03071 0.78 -1.7
337,375 + MPMX19_03071 0.78 -1.4
337,375 + MPMX19_03071 0.78 -1.3
337,376 + MPMX19_03071 0.78 +0.3
337,376 - MPMX19_03071 0.78 -1.2
337,376 - MPMX19_03071 0.78 +0.6
337,376 - MPMX19_03071 0.78 +0.3
337,376 - MPMX19_03071 0.78 -1.4
337,376 - MPMX19_03071 0.78 +0.2
337,376 - MPMX19_03071 0.78 -1.2
337,376 - MPMX19_03071 0.78 -0.4
337,376 - MPMX19_03071 0.78 +0.2
337,376 - MPMX19_03071 0.78 -0.1
337,399 + MPMX19_03071 0.80 -0.4
337,399 + MPMX19_03071 0.80 -0.0
337,399 + MPMX19_03071 0.80 +0.4
337,399 + MPMX19_03071 0.80 -0.1
337,400 - MPMX19_03071 0.80 -1.9
337,400 - MPMX19_03071 0.80 +1.2
337,400 - MPMX19_03071 0.80 -1.3
337,400 - MPMX19_03071 0.80 -0.7
337,400 - MPMX19_03071 0.80 -0.4
337,400 - MPMX19_03071 0.80 -0.4
337,400 - MPMX19_03071 0.80 +0.8
337,400 - MPMX19_03071 0.80 -0.8
337,400 - MPMX19_03071 0.80 +0.6
337,400 - MPMX19_03071 0.80 +0.1
337,525 - MPMX19_03071 0.88 -1.5
337,525 - MPMX19_03071 0.88 +0.2
337,582 + +0.8
337,582 + +1.2
337,583 - -0.8
337,630 + +1.2
337,630 + -0.2
337,630 + +0.2
337,631 - -0.1
337,631 - -0.3
337,700 - -0.6
337,714 + +0.6
337,715 - -1.5
337,715 - -0.2
337,715 - -0.6
337,771 + -0.3
337,772 - -0.7
337,772 - +0.5
337,772 - -1.0
337,777 + MPMX19_03072 0.13 -0.4
337,777 + MPMX19_03072 0.13 +0.4
337,778 - MPMX19_03072 0.14 +0.3
337,868 + -0.6
337,868 + -0.8
337,868 + +0.1
337,868 + -0.5
337,868 + -1.8
337,869 - +0.4
337,869 - -0.9
337,869 - -0.4
337,879 + -0.1
337,879 + -1.0
337,928 + -2.5
337,928 + -0.3
337,928 + +1.0
337,928 + +0.4
337,928 + +0.4
337,929 - -0.3
337,929 - +0.1
337,972 + +0.5
338,027 + MPMX19_03073 0.17 +0.2
338,027 + MPMX19_03073 0.17 -0.8
338,465 + MPMX19_03073 0.82 +1.2
338,465 + MPMX19_03073 0.82 -0.6
338,465 + MPMX19_03073 0.82 -0.6
338,466 - MPMX19_03073 0.82 -1.0
338,466 - MPMX19_03073 0.82 -0.4
338,466 - MPMX19_03073 0.82 -1.9
338,723 + +0.0
338,763 - -2.4
339,027 + MPMX19_03074 0.14 -0.6
339,027 + MPMX19_03074 0.14 +0.8
339,027 + MPMX19_03074 0.14 +0.3
339,027 + MPMX19_03074 0.14 +0.2
339,028 - MPMX19_03074 0.14 -1.0
339,028 - MPMX19_03074 0.14 -1.0
339,028 - MPMX19_03074 0.14 +0.5
339,028 - MPMX19_03074 0.14 -0.0
339,029 + MPMX19_03074 0.14 -1.3
339,030 - MPMX19_03074 0.14 +1.3
339,084 + MPMX19_03074 0.17 -0.2
339,084 + MPMX19_03074 0.17 -0.8
339,084 + MPMX19_03074 0.17 -1.2
339,084 + MPMX19_03074 0.17 +0.5
339,084 + MPMX19_03074 0.17 +0.6
339,084 + MPMX19_03074 0.17 -1.9
339,084 + MPMX19_03074 0.17 -0.1
339,085 - MPMX19_03074 0.17 +0.6
339,085 - MPMX19_03074 0.17 -2.2
339,085 - MPMX19_03074 0.17 +1.6
339,085 - MPMX19_03074 0.17 -1.4
339,085 - MPMX19_03074 0.17 -0.9
339,085 - MPMX19_03074 0.17 +1.2
339,162 + MPMX19_03074 0.21 +0.4
339,162 + MPMX19_03074 0.21 -1.1
339,162 + MPMX19_03074 0.21 +0.7
339,162 + MPMX19_03074 0.21 +1.0
339,163 - MPMX19_03074 0.21 -1.3
339,303 + MPMX19_03074 0.27 -0.7
339,303 + MPMX19_03074 0.27 -0.9
339,303 + MPMX19_03074 0.27 -1.2
339,304 - MPMX19_03074 0.27 +1.2
339,304 - MPMX19_03074 0.27 +0.4
339,304 - MPMX19_03074 0.27 -0.3
339,304 - MPMX19_03074 0.27 +1.0
339,304 - MPMX19_03074 0.27 +0.6
339,336 + MPMX19_03074 0.29 -1.0
339,336 + MPMX19_03074 0.29 +0.2
339,336 + MPMX19_03074 0.29 +0.5
339,337 - MPMX19_03074 0.29 -0.4
339,337 - MPMX19_03074 0.29 +0.2
339,337 - MPMX19_03074 0.29 -1.9
339,337 - MPMX19_03074 0.29 -0.3
339,337 - MPMX19_03074 0.29 -1.4
339,337 - MPMX19_03074 0.29 +1.4
339,499 - MPMX19_03074 0.37 -0.2
339,499 - MPMX19_03074 0.37 -0.3
339,499 - MPMX19_03074 0.37 -0.3
339,576 + MPMX19_03074 0.41 -1.1
339,576 + MPMX19_03074 0.41 +0.0
339,576 + MPMX19_03074 0.41 -0.5
339,576 + MPMX19_03074 0.41 -0.4
339,577 - MPMX19_03074 0.41 -0.2
339,577 - MPMX19_03074 0.41 -0.1

Or see this region's nucleotide sequence