Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03063 and MPMX19_03064 overlap by 4 nucleotides MPMX19_03064 and MPMX19_03065 are separated by 229 nucleotides MPMX19_03065 and MPMX19_03066 overlap by 11 nucleotides
MPMX19_03063: MPMX19_03063 - hypothetical protein, at 328,577 to 329,062
_03063
MPMX19_03064: MPMX19_03064 - Cytochrome c-type protein NapC, at 329,059 to 329,730
_03064
MPMX19_03065: MPMX19_03065 - Nucleoid occlusion protein, at 329,960 to 330,847
_03065
MPMX19_03066: MPMX19_03066 - hypothetical protein, at 330,837 to 331,850
_03066
Position (kb) 329
330
331 Strain fitness (log2 ratio) -2
-1
0
1 at 329.258 kb on - strand, within MPMX19_03064 at 329.258 kb on - strand, within MPMX19_03064 at 329.258 kb on - strand, within MPMX19_03064 at 329.569 kb on + strand, within MPMX19_03064 at 329.569 kb on + strand, within MPMX19_03064 at 329.569 kb on + strand, within MPMX19_03064 at 329.569 kb on + strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.635 kb on - strand, within MPMX19_03064 at 329.635 kb on - strand, within MPMX19_03064 at 329.961 kb on + strand at 329.961 kb on + strand at 329.961 kb on + strand at 329.962 kb on - strand at 329.962 kb on - strand at 329.962 kb on - strand at 329.962 kb on - strand at 329.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 329,258 - MPMX19_03064 0.30 -1.2 329,258 - MPMX19_03064 0.30 -0.8 329,258 - MPMX19_03064 0.30 -0.1 329,569 + MPMX19_03064 0.76 +0.4 329,569 + MPMX19_03064 0.76 -0.2 329,569 + MPMX19_03064 0.76 -0.4 329,569 + MPMX19_03064 0.76 -0.8 329,570 - MPMX19_03064 0.76 -0.8 329,570 - MPMX19_03064 0.76 -2.3 329,570 - MPMX19_03064 0.76 +0.6 329,570 - MPMX19_03064 0.76 -0.5 329,570 - MPMX19_03064 0.76 +1.2 329,570 - MPMX19_03064 0.76 +0.2 329,570 - MPMX19_03064 0.76 -0.4 329,635 - MPMX19_03064 0.86 -2.2 329,635 - MPMX19_03064 0.86 -1.5 329,961 + -0.5 329,961 + +1.6 329,961 + +1.2 329,962 - -1.0 329,962 - -1.7 329,962 - -2.1 329,962 - +1.4 329,962 - -0.3
Or see this region's nucleotide sequence