Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03054

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03052 and MPMX19_03053 overlap by 1 nucleotidesMPMX19_03053 and MPMX19_03054 overlap by 1 nucleotidesMPMX19_03054 and MPMX19_03055 overlap by 4 nucleotidesMPMX19_03055 and MPMX19_03056 overlap by 4 nucleotides MPMX19_03052: MPMX19_03052 - hypothetical protein, at 315,567 to 316,577 _03052 MPMX19_03053: MPMX19_03053 - Copper-binding lipoprotein NosL, at 316,577 to 317,119 _03053 MPMX19_03054: MPMX19_03054 - putative ABC transporter permease protein NosY, at 317,119 to 317,943 _03054 MPMX19_03055: MPMX19_03055 - putative ABC transporter ATP-binding protein NosF, at 317,940 to 318,866 _03055 MPMX19_03056: MPMX19_03056 - putative ABC transporter binding protein NosD, at 318,863 to 320,239 _03056 Position (kb) 317 318Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.711 kb on - strand, within MPMX19_03053at 316.758 kb on + strand, within MPMX19_03053at 316.758 kb on + strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.983 kb on + strand, within MPMX19_03053at 316.983 kb on + strand, within MPMX19_03053at 316.983 kb on + strand, within MPMX19_03053at 316.983 kb on + strand, within MPMX19_03053at 316.984 kb on - strand, within MPMX19_03053at 316.984 kb on - strand, within MPMX19_03053at 317.288 kb on + strand, within MPMX19_03054at 317.381 kb on + strand, within MPMX19_03054at 317.382 kb on - strand, within MPMX19_03054at 317.382 kb on - strand, within MPMX19_03054at 317.462 kb on + strand, within MPMX19_03054at 317.462 kb on + strand, within MPMX19_03054at 317.666 kb on + strand, within MPMX19_03054at 317.667 kb on - strand, within MPMX19_03054at 317.667 kb on - strand, within MPMX19_03054at 317.667 kb on - strand, within MPMX19_03054at 317.737 kb on + strand, within MPMX19_03054at 317.737 kb on + strand, within MPMX19_03054at 317.738 kb on - strand, within MPMX19_03054at 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 318.346 kb on + strand, within MPMX19_03055at 318.346 kb on + strand, within MPMX19_03055at 318.346 kb on + strand, within MPMX19_03055at 318.346 kb on + strand, within MPMX19_03055at 318.346 kb on + strand, within MPMX19_03055at 318.347 kb on - strand, within MPMX19_03055at 318.347 kb on - strand, within MPMX19_03055at 318.347 kb on - strand, within MPMX19_03055at 318.347 kb on - strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.559 kb on + strand, within MPMX19_03055at 318.559 kb on + strand, within MPMX19_03055at 318.560 kb on - strand, within MPMX19_03055at 318.560 kb on - strand, within MPMX19_03055at 318.560 kb on - strand, within MPMX19_03055at 318.560 kb on - strand, within MPMX19_03055

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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316,174 + MPMX19_03052 0.60 +0.3
316,174 + MPMX19_03052 0.60 -1.2
316,174 + MPMX19_03052 0.60 -1.2
316,174 + MPMX19_03052 0.60 -0.7
316,174 + MPMX19_03052 0.60 -1.3
316,174 + MPMX19_03052 0.60 +0.6
316,174 + MPMX19_03052 0.60 -1.9
316,174 + MPMX19_03052 0.60 -0.9
316,174 + MPMX19_03052 0.60 -0.5
316,175 - MPMX19_03052 0.60 -0.8
316,175 - MPMX19_03052 0.60 -0.4
316,175 - MPMX19_03052 0.60 -1.4
316,175 - MPMX19_03052 0.60 +0.4
316,175 - MPMX19_03052 0.60 +1.0
316,175 - MPMX19_03052 0.60 +0.2
316,711 - MPMX19_03053 0.25 +0.1
316,758 + MPMX19_03053 0.33 -2.4
316,758 + MPMX19_03053 0.33 -0.6
316,759 - MPMX19_03053 0.34 -0.7
316,759 - MPMX19_03053 0.34 -0.1
316,759 - MPMX19_03053 0.34 -0.4
316,759 - MPMX19_03053 0.34 -1.0
316,759 - MPMX19_03053 0.34 +0.9
316,759 - MPMX19_03053 0.34 -0.4
316,759 - MPMX19_03053 0.34 -0.6
316,759 - MPMX19_03053 0.34 -0.9
316,759 - MPMX19_03053 0.34 -1.8
316,836 + MPMX19_03053 0.48 -1.2
316,836 + MPMX19_03053 0.48 -0.9
316,836 + MPMX19_03053 0.48 -1.7
316,836 + MPMX19_03053 0.48 -1.0
316,836 + MPMX19_03053 0.48 -0.0
316,836 + MPMX19_03053 0.48 -0.9
316,836 + MPMX19_03053 0.48 +0.1
316,836 + MPMX19_03053 0.48 +0.5
316,836 + MPMX19_03053 0.48 -0.8
316,837 - MPMX19_03053 0.48 +0.1
316,837 - MPMX19_03053 0.48 -1.8
316,837 - MPMX19_03053 0.48 +0.1
316,837 - MPMX19_03053 0.48 -0.0
316,837 - MPMX19_03053 0.48 -0.6
316,837 - MPMX19_03053 0.48 -0.0
316,837 - MPMX19_03053 0.48 -1.0
316,837 - MPMX19_03053 0.48 -0.3
316,837 - MPMX19_03053 0.48 -1.1
316,837 - MPMX19_03053 0.48 -1.6
316,837 - MPMX19_03053 0.48 -0.2
316,983 + MPMX19_03053 0.75 -0.4
316,983 + MPMX19_03053 0.75 -0.2
316,983 + MPMX19_03053 0.75 +0.7
316,983 + MPMX19_03053 0.75 +1.1
316,984 - MPMX19_03053 0.75 -0.6
316,984 - MPMX19_03053 0.75 +1.4
317,288 + MPMX19_03054 0.20 -1.0
317,381 + MPMX19_03054 0.32 +0.4
317,382 - MPMX19_03054 0.32 -1.0
317,382 - MPMX19_03054 0.32 -0.8
317,462 + MPMX19_03054 0.42 +0.2
317,462 + MPMX19_03054 0.42 +0.2
317,666 + MPMX19_03054 0.66 -1.5
317,667 - MPMX19_03054 0.66 -0.7
317,667 - MPMX19_03054 0.66 +0.5
317,667 - MPMX19_03054 0.66 -0.1
317,737 + MPMX19_03054 0.75 +1.0
317,737 + MPMX19_03054 0.75 +1.3
317,738 - MPMX19_03054 0.75 -0.4
317,974 + -0.6
317,974 + -0.3
317,974 + +0.0
317,974 + -1.3
317,974 + +0.1
317,974 + +0.1
317,974 + -0.3
317,974 + -0.0
317,974 + -0.6
317,974 + -0.6
317,974 + -1.5
317,974 + -0.9
317,974 + -1.2
317,974 + -0.4
317,974 + -0.2
317,974 + -0.4
317,974 + -0.1
317,975 - -0.3
317,975 - -0.1
317,975 - -0.2
317,975 - +0.6
317,975 - -0.2
317,975 - -2.6
317,975 - -0.7
317,975 - -1.7
317,975 - +0.1
317,975 - -1.6
317,975 - -0.4
317,975 - +0.1
317,975 - +0.3
317,975 - -0.2
317,975 - +0.4
317,975 - -0.9
317,975 - -1.9
317,975 - -1.4
317,975 - -0.1
317,975 - -1.8
317,975 - +1.3
317,975 - -0.9
317,975 - -0.0
318,346 + MPMX19_03055 0.44 -1.7
318,346 + MPMX19_03055 0.44 -0.9
318,346 + MPMX19_03055 0.44 -1.5
318,346 + MPMX19_03055 0.44 -2.2
318,346 + MPMX19_03055 0.44 -0.6
318,347 - MPMX19_03055 0.44 -0.9
318,347 - MPMX19_03055 0.44 +0.7
318,347 - MPMX19_03055 0.44 -1.9
318,347 - MPMX19_03055 0.44 -0.4
318,463 + MPMX19_03055 0.56 -0.7
318,463 + MPMX19_03055 0.56 -0.3
318,463 + MPMX19_03055 0.56 +0.6
318,463 + MPMX19_03055 0.56 -1.3
318,463 + MPMX19_03055 0.56 -1.3
318,463 + MPMX19_03055 0.56 +0.0
318,463 + MPMX19_03055 0.56 -1.2
318,463 + MPMX19_03055 0.56 +0.2
318,463 + MPMX19_03055 0.56 +0.5
318,463 + MPMX19_03055 0.56 -1.3
318,464 - MPMX19_03055 0.57 +0.1
318,464 - MPMX19_03055 0.57 -1.3
318,464 - MPMX19_03055 0.57 -0.1
318,464 - MPMX19_03055 0.57 -0.4
318,464 - MPMX19_03055 0.57 -0.9
318,464 - MPMX19_03055 0.57 -1.8
318,464 - MPMX19_03055 0.57 +0.9
318,464 - MPMX19_03055 0.57 +0.1
318,464 - MPMX19_03055 0.57 -0.3
318,464 - MPMX19_03055 0.57 +0.8
318,464 - MPMX19_03055 0.57 -2.8
318,559 + MPMX19_03055 0.67 +2.7
318,559 + MPMX19_03055 0.67 +0.8
318,560 - MPMX19_03055 0.67 +1.1
318,560 - MPMX19_03055 0.67 -0.2
318,560 - MPMX19_03055 0.67 -0.2
318,560 - MPMX19_03055 0.67 -0.2

Or see this region's nucleotide sequence