Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03036

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03034 and MPMX19_03035 are separated by 46 nucleotidesMPMX19_03035 and MPMX19_03036 are separated by 88 nucleotidesMPMX19_03036 and MPMX19_03037 are separated by 22 nucleotidesMPMX19_03037 and MPMX19_03038 overlap by 36 nucleotides MPMX19_03034: MPMX19_03034 - hypothetical protein, at 302,178 to 303,023 _03034 MPMX19_03035: MPMX19_03035 - Protein YceI, at 303,070 to 303,654 _03035 MPMX19_03036: MPMX19_03036 - Glutathionyl-hydroquinone reductase YqjG, at 303,743 to 304,744 _03036 MPMX19_03037: MPMX19_03037 - Carboxylesterase 2, at 304,767 to 305,435 _03037 MPMX19_03038: MPMX19_03038 - hypothetical protein, at 305,400 to 306,530 _03038 Position (kb) 303 304 305Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 302.879 kb on + strand, within MPMX19_03034at 303.033 kb on + strandat 303.154 kb on + strand, within MPMX19_03035at 303.154 kb on + strand, within MPMX19_03035at 303.154 kb on + strand, within MPMX19_03035at 303.154 kb on + strand, within MPMX19_03035at 303.154 kb on + strand, within MPMX19_03035at 303.154 kb on + strand, within MPMX19_03035at 303.155 kb on - strand, within MPMX19_03035at 303.155 kb on - strand, within MPMX19_03035at 303.155 kb on - strand, within MPMX19_03035at 303.589 kb on + strand, within MPMX19_03035at 303.589 kb on + strand, within MPMX19_03035at 303.589 kb on + strand, within MPMX19_03035at 303.590 kb on - strand, within MPMX19_03035at 303.590 kb on - strand, within MPMX19_03035at 303.590 kb on - strand, within MPMX19_03035at 303.683 kb on + strandat 303.683 kb on + strandat 303.683 kb on + strandat 303.684 kb on - strandat 303.684 kb on - strandat 303.684 kb on - strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.917 kb on + strand, within MPMX19_03036at 303.917 kb on + strand, within MPMX19_03036at 303.917 kb on + strand, within MPMX19_03036at 303.917 kb on + strand, within MPMX19_03036at 303.917 kb on + strand, within MPMX19_03036at 303.917 kb on + strand, within MPMX19_03036at 303.917 kb on + strand, within MPMX19_03036at 303.917 kb on + strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.926 kb on + strand, within MPMX19_03036at 303.926 kb on + strand, within MPMX19_03036at 303.926 kb on + strand, within MPMX19_03036at 303.926 kb on + strand, within MPMX19_03036at 303.926 kb on + strand, within MPMX19_03036at 303.926 kb on + strand, within MPMX19_03036at 303.926 kb on + strand, within MPMX19_03036at 303.926 kb on + strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 304.037 kb on + strand, within MPMX19_03036at 304.037 kb on + strand, within MPMX19_03036at 304.038 kb on - strand, within MPMX19_03036at 304.088 kb on + strand, within MPMX19_03036at 304.089 kb on - strand, within MPMX19_03036at 304.089 kb on - strand, within MPMX19_03036at 304.089 kb on - strand, within MPMX19_03036at 304.097 kb on + strand, within MPMX19_03036at 304.097 kb on + strand, within MPMX19_03036at 304.097 kb on + strand, within MPMX19_03036at 304.098 kb on - strand, within MPMX19_03036at 304.098 kb on - strand, within MPMX19_03036at 304.098 kb on - strand, within MPMX19_03036at 304.098 kb on - strand, within MPMX19_03036at 304.118 kb on + strand, within MPMX19_03036at 304.118 kb on + strand, within MPMX19_03036at 304.118 kb on + strand, within MPMX19_03036at 304.118 kb on + strand, within MPMX19_03036at 304.119 kb on - strand, within MPMX19_03036at 304.119 kb on - strand, within MPMX19_03036at 304.119 kb on - strand, within MPMX19_03036at 304.250 kb on + strand, within MPMX19_03036at 304.250 kb on + strand, within MPMX19_03036at 304.251 kb on - strand, within MPMX19_03036at 304.251 kb on - strand, within MPMX19_03036at 304.251 kb on - strand, within MPMX19_03036at 304.298 kb on + strand, within MPMX19_03036at 304.298 kb on + strand, within MPMX19_03036at 304.298 kb on + strand, within MPMX19_03036at 304.298 kb on + strand, within MPMX19_03036at 304.298 kb on + strand, within MPMX19_03036at 304.299 kb on - strand, within MPMX19_03036at 304.299 kb on - strand, within MPMX19_03036at 304.323 kb on - strand, within MPMX19_03036at 304.355 kb on + strand, within MPMX19_03036at 304.355 kb on + strand, within MPMX19_03036at 304.355 kb on + strand, within MPMX19_03036at 304.355 kb on + strand, within MPMX19_03036at 304.424 kb on + strand, within MPMX19_03036at 304.496 kb on + strand, within MPMX19_03036at 304.496 kb on + strand, within MPMX19_03036at 304.497 kb on - strand, within MPMX19_03036at 304.539 kb on - strand, within MPMX19_03036at 304.557 kb on - strand, within MPMX19_03036at 304.557 kb on - strand, within MPMX19_03036at 304.557 kb on - strand, within MPMX19_03036at 304.571 kb on + strand, within MPMX19_03036at 304.571 kb on + strand, within MPMX19_03036at 304.571 kb on + strand, within MPMX19_03036at 304.572 kb on - strand, within MPMX19_03036at 304.572 kb on - strand, within MPMX19_03036at 304.572 kb on - strand, within MPMX19_03036at 304.572 kb on - strand, within MPMX19_03036at 304.572 kb on - strand, within MPMX19_03036at 304.572 kb on - strand, within MPMX19_03036at 304.626 kb on - strand, within MPMX19_03036at 304.626 kb on - strand, within MPMX19_03036at 304.626 kb on - strand, within MPMX19_03036at 304.628 kb on + strand, within MPMX19_03036at 304.628 kb on + strand, within MPMX19_03036at 304.628 kb on + strand, within MPMX19_03036at 304.628 kb on + strand, within MPMX19_03036at 304.628 kb on + strand, within MPMX19_03036at 304.628 kb on + strand, within MPMX19_03036at 304.628 kb on + strand, within MPMX19_03036at 304.628 kb on + strand, within MPMX19_03036at 304.629 kb on - strand, within MPMX19_03036at 304.629 kb on - strand, within MPMX19_03036at 304.629 kb on - strand, within MPMX19_03036at 304.629 kb on - strand, within MPMX19_03036at 304.629 kb on - strand, within MPMX19_03036at 304.629 kb on - strand, within MPMX19_03036at 304.629 kb on - strand, within MPMX19_03036at 305.401 kb on + strandat 305.401 kb on + strandat 305.401 kb on + strandat 305.401 kb on + strandat 305.401 kb on + strandat 305.402 kb on - strandat 305.402 kb on - strandat 305.402 kb on - strandat 305.402 kb on - strandat 305.402 kb on - strandat 305.402 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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302,879 + MPMX19_03034 0.83 +0.7
303,033 + -0.9
303,154 + MPMX19_03035 0.14 -0.2
303,154 + MPMX19_03035 0.14 -1.3
303,154 + MPMX19_03035 0.14 +1.1
303,154 + MPMX19_03035 0.14 -1.2
303,154 + MPMX19_03035 0.14 +0.9
303,154 + MPMX19_03035 0.14 -1.6
303,155 - MPMX19_03035 0.15 -0.3
303,155 - MPMX19_03035 0.15 -1.5
303,155 - MPMX19_03035 0.15 -1.2
303,589 + MPMX19_03035 0.89 -2.3
303,589 + MPMX19_03035 0.89 -1.5
303,589 + MPMX19_03035 0.89 -1.8
303,590 - MPMX19_03035 0.89 -0.8
303,590 - MPMX19_03035 0.89 -0.3
303,590 - MPMX19_03035 0.89 -0.2
303,683 + -0.7
303,683 + -0.5
303,683 + +0.0
303,684 - -1.0
303,684 - +0.3
303,684 - +0.7
303,714 + -1.6
303,714 + -2.0
303,714 + -0.6
303,714 + +0.1
303,714 + -1.8
303,714 + -0.1
303,714 + -0.3
303,714 + -0.1
303,714 + -0.9
303,714 + -1.1
303,714 + -0.1
303,714 + +1.7
303,715 - -0.8
303,715 - +0.5
303,715 - -0.8
303,715 - -2.6
303,715 - +0.1
303,715 - -0.3
303,715 - +0.3
303,715 - -1.1
303,715 - +0.5
303,715 - -1.4
303,715 - -1.3
303,715 - +0.1
303,715 - -0.1
303,715 - -0.7
303,715 - -1.2
303,715 - -2.2
303,715 - -0.4
303,917 + MPMX19_03036 0.17 -0.6
303,917 + MPMX19_03036 0.17 +0.4
303,917 + MPMX19_03036 0.17 +0.4
303,917 + MPMX19_03036 0.17 +0.9
303,917 + MPMX19_03036 0.17 -1.1
303,917 + MPMX19_03036 0.17 -0.8
303,917 + MPMX19_03036 0.17 -0.0
303,917 + MPMX19_03036 0.17 -0.5
303,918 - MPMX19_03036 0.17 -0.5
303,918 - MPMX19_03036 0.17 -0.3
303,918 - MPMX19_03036 0.17 +0.5
303,918 - MPMX19_03036 0.17 +0.1
303,918 - MPMX19_03036 0.17 -1.5
303,918 - MPMX19_03036 0.17 -0.9
303,918 - MPMX19_03036 0.17 +0.9
303,918 - MPMX19_03036 0.17 +0.9
303,918 - MPMX19_03036 0.17 +1.7
303,918 - MPMX19_03036 0.17 -1.0
303,918 - MPMX19_03036 0.17 +1.1
303,918 - MPMX19_03036 0.17 -0.5
303,918 - MPMX19_03036 0.17 -1.7
303,918 - MPMX19_03036 0.17 +0.7
303,926 + MPMX19_03036 0.18 +0.3
303,926 + MPMX19_03036 0.18 -2.2
303,926 + MPMX19_03036 0.18 -1.3
303,926 + MPMX19_03036 0.18 -0.7
303,926 + MPMX19_03036 0.18 -0.2
303,926 + MPMX19_03036 0.18 +1.9
303,926 + MPMX19_03036 0.18 -1.5
303,926 + MPMX19_03036 0.18 +0.5
303,927 - MPMX19_03036 0.18 -0.3
303,927 - MPMX19_03036 0.18 -1.2
303,927 - MPMX19_03036 0.18 +1.3
303,927 - MPMX19_03036 0.18 -0.3
303,927 - MPMX19_03036 0.18 -0.8
303,927 - MPMX19_03036 0.18 +1.1
303,927 - MPMX19_03036 0.18 -0.1
303,927 - MPMX19_03036 0.18 -1.0
303,927 - MPMX19_03036 0.18 +0.4
303,927 - MPMX19_03036 0.18 -0.2
303,927 - MPMX19_03036 0.18 -1.2
303,927 - MPMX19_03036 0.18 -0.2
304,037 + MPMX19_03036 0.29 -0.7
304,037 + MPMX19_03036 0.29 -0.2
304,038 - MPMX19_03036 0.29 +0.5
304,088 + MPMX19_03036 0.34 -1.5
304,089 - MPMX19_03036 0.35 -0.2
304,089 - MPMX19_03036 0.35 -1.0
304,089 - MPMX19_03036 0.35 -0.0
304,097 + MPMX19_03036 0.35 +1.1
304,097 + MPMX19_03036 0.35 -2.3
304,097 + MPMX19_03036 0.35 +0.4
304,098 - MPMX19_03036 0.35 -1.9
304,098 - MPMX19_03036 0.35 -1.1
304,098 - MPMX19_03036 0.35 -1.6
304,098 - MPMX19_03036 0.35 +0.5
304,118 + MPMX19_03036 0.37 +0.0
304,118 + MPMX19_03036 0.37 +0.1
304,118 + MPMX19_03036 0.37 -0.2
304,118 + MPMX19_03036 0.37 -0.0
304,119 - MPMX19_03036 0.38 -1.2
304,119 - MPMX19_03036 0.38 -0.7
304,119 - MPMX19_03036 0.38 -1.2
304,250 + MPMX19_03036 0.51 +0.4
304,250 + MPMX19_03036 0.51 -2.0
304,251 - MPMX19_03036 0.51 +0.1
304,251 - MPMX19_03036 0.51 -0.3
304,251 - MPMX19_03036 0.51 -0.5
304,298 + MPMX19_03036 0.55 -1.1
304,298 + MPMX19_03036 0.55 +0.6
304,298 + MPMX19_03036 0.55 -1.3
304,298 + MPMX19_03036 0.55 -0.0
304,298 + MPMX19_03036 0.55 -2.2
304,299 - MPMX19_03036 0.55 +1.3
304,299 - MPMX19_03036 0.55 -0.2
304,323 - MPMX19_03036 0.58 +0.4
304,355 + MPMX19_03036 0.61 +0.3
304,355 + MPMX19_03036 0.61 -1.2
304,355 + MPMX19_03036 0.61 -0.6
304,355 + MPMX19_03036 0.61 -1.0
304,424 + MPMX19_03036 0.68 +0.2
304,496 + MPMX19_03036 0.75 +0.4
304,496 + MPMX19_03036 0.75 -0.2
304,497 - MPMX19_03036 0.75 +0.5
304,539 - MPMX19_03036 0.79 +0.4
304,557 - MPMX19_03036 0.81 -0.7
304,557 - MPMX19_03036 0.81 -0.3
304,557 - MPMX19_03036 0.81 +0.0
304,571 + MPMX19_03036 0.83 +0.1
304,571 + MPMX19_03036 0.83 +0.1
304,571 + MPMX19_03036 0.83 +0.8
304,572 - MPMX19_03036 0.83 +0.1
304,572 - MPMX19_03036 0.83 -0.3
304,572 - MPMX19_03036 0.83 -0.9
304,572 - MPMX19_03036 0.83 -1.8
304,572 - MPMX19_03036 0.83 -2.8
304,572 - MPMX19_03036 0.83 +0.0
304,626 - MPMX19_03036 0.88 -0.3
304,626 - MPMX19_03036 0.88 +0.1
304,626 - MPMX19_03036 0.88 -0.1
304,628 + MPMX19_03036 0.88 +0.5
304,628 + MPMX19_03036 0.88 -0.6
304,628 + MPMX19_03036 0.88 -0.9
304,628 + MPMX19_03036 0.88 -1.5
304,628 + MPMX19_03036 0.88 -0.5
304,628 + MPMX19_03036 0.88 -2.0
304,628 + MPMX19_03036 0.88 +0.5
304,628 + MPMX19_03036 0.88 -0.0
304,629 - MPMX19_03036 0.88 -0.6
304,629 - MPMX19_03036 0.88 -0.5
304,629 - MPMX19_03036 0.88 -1.8
304,629 - MPMX19_03036 0.88 -0.2
304,629 - MPMX19_03036 0.88 -1.0
304,629 - MPMX19_03036 0.88 +0.7
304,629 - MPMX19_03036 0.88 -0.8
305,401 + -1.8
305,401 + -0.9
305,401 + -1.2
305,401 + -0.7
305,401 + -0.9
305,402 - +0.5
305,402 - -1.9
305,402 - -1.5
305,402 - +2.1
305,402 - -1.0
305,402 - -0.6

Or see this region's nucleotide sequence