Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03025

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03024 and MPMX19_03025 are separated by 47 nucleotidesMPMX19_03025 and MPMX19_03026 are separated by 47 nucleotidesMPMX19_03026 and MPMX19_03027 overlap by 4 nucleotides MPMX19_03024: MPMX19_03024 - hypothetical protein, at 288,915 to 290,369 _03024 MPMX19_03025: MPMX19_03025 - hypothetical protein, at 290,417 to 291,538 _03025 MPMX19_03026: MPMX19_03026 - Fructose import ATP-binding protein FrcA, at 291,586 to 292,383 _03026 MPMX19_03027: MPMX19_03027 - Xylose transport system permease protein XylH, at 292,380 to 293,702 _03027 Position (kb) 290 291 292Strain fitness (log2 ratio) -2 -1 0 1 2at 289.771 kb on + strand, within MPMX19_03024at 289.772 kb on - strand, within MPMX19_03024at 290.151 kb on + strand, within MPMX19_03024at 290.151 kb on + strand, within MPMX19_03024at 290.151 kb on + strand, within MPMX19_03024at 290.151 kb on + strand, within MPMX19_03024at 290.151 kb on + strand, within MPMX19_03024at 290.151 kb on + strand, within MPMX19_03024at 290.152 kb on - strand, within MPMX19_03024at 290.152 kb on - strand, within MPMX19_03024at 290.152 kb on - strand, within MPMX19_03024at 290.152 kb on - strand, within MPMX19_03024at 290.152 kb on - strand, within MPMX19_03024at 290.152 kb on - strand, within MPMX19_03024at 290.152 kb on - strand, within MPMX19_03024at 290.152 kb on - strand, within MPMX19_03024at 290.154 kb on + strand, within MPMX19_03024at 290.154 kb on + strand, within MPMX19_03024at 290.155 kb on - strand, within MPMX19_03024at 290.155 kb on - strand, within MPMX19_03024at 290.155 kb on - strand, within MPMX19_03024at 290.155 kb on - strand, within MPMX19_03024at 290.155 kb on - strand, within MPMX19_03024at 290.367 kb on + strandat 290.368 kb on - strandat 290.368 kb on - strandat 290.368 kb on - strandat 290.368 kb on - strandat 290.368 kb on - strandat 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.744 kb on + strand, within MPMX19_03025at 290.744 kb on + strand, within MPMX19_03025at 290.744 kb on + strand, within MPMX19_03025at 290.745 kb on - strand, within MPMX19_03025at 290.745 kb on - strand, within MPMX19_03025at 290.792 kb on + strand, within MPMX19_03025at 290.792 kb on + strand, within MPMX19_03025at 290.792 kb on + strand, within MPMX19_03025at 290.792 kb on + strand, within MPMX19_03025at 290.792 kb on + strand, within MPMX19_03025at 290.793 kb on - strand, within MPMX19_03025at 290.793 kb on - strand, within MPMX19_03025at 290.793 kb on - strand, within MPMX19_03025at 290.793 kb on - strand, within MPMX19_03025at 290.793 kb on - strand, within MPMX19_03025at 290.793 kb on - strand, within MPMX19_03025at 290.807 kb on + strand, within MPMX19_03025at 290.807 kb on + strand, within MPMX19_03025at 290.807 kb on + strand, within MPMX19_03025at 290.807 kb on + strand, within MPMX19_03025at 290.807 kb on + strand, within MPMX19_03025at 290.807 kb on + strand, within MPMX19_03025at 291.020 kb on + strand, within MPMX19_03025at 291.020 kb on + strand, within MPMX19_03025at 291.020 kb on + strand, within MPMX19_03025at 291.020 kb on + strand, within MPMX19_03025at 291.020 kb on + strand, within MPMX19_03025at 291.020 kb on + strand, within MPMX19_03025at 291.020 kb on + strand, within MPMX19_03025at 291.020 kb on + strand, within MPMX19_03025at 291.021 kb on - strand, within MPMX19_03025at 291.021 kb on - strand, within MPMX19_03025at 291.021 kb on - strand, within MPMX19_03025at 291.021 kb on - strand, within MPMX19_03025at 291.021 kb on - strand, within MPMX19_03025at 291.021 kb on - strand, within MPMX19_03025at 291.021 kb on - strand, within MPMX19_03025at 291.021 kb on - strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.149 kb on + strand, within MPMX19_03025at 291.149 kb on + strand, within MPMX19_03025at 291.149 kb on + strand, within MPMX19_03025at 291.149 kb on + strand, within MPMX19_03025at 291.149 kb on + strand, within MPMX19_03025at 291.149 kb on + strand, within MPMX19_03025at 291.150 kb on - strand, within MPMX19_03025at 291.150 kb on - strand, within MPMX19_03025at 291.150 kb on - strand, within MPMX19_03025at 291.215 kb on + strand, within MPMX19_03025at 291.215 kb on + strand, within MPMX19_03025at 291.215 kb on + strand, within MPMX19_03025at 291.215 kb on + strand, within MPMX19_03025at 291.215 kb on + strand, within MPMX19_03025at 291.215 kb on + strand, within MPMX19_03025at 291.216 kb on - strand, within MPMX19_03025at 291.216 kb on - strand, within MPMX19_03025at 291.216 kb on - strand, within MPMX19_03025at 291.216 kb on - strand, within MPMX19_03025at 291.216 kb on - strand, within MPMX19_03025at 291.536 kb on + strandat 291.536 kb on + strandat 291.536 kb on + strandat 291.537 kb on - strandat 291.537 kb on - strandat 291.537 kb on - strandat 291.537 kb on - strandat 291.537 kb on - strandat 291.537 kb on - strandat 291.537 kb on - strandat 292.100 kb on + strand, within MPMX19_03026at 292.100 kb on + strand, within MPMX19_03026at 292.100 kb on + strand, within MPMX19_03026at 292.101 kb on - strand, within MPMX19_03026at 292.101 kb on - strand, within MPMX19_03026at 292.193 kb on + strand, within MPMX19_03026at 292.194 kb on - strand, within MPMX19_03026at 292.194 kb on - strand, within MPMX19_03026at 292.194 kb on - strand, within MPMX19_03026at 292.194 kb on - strand, within MPMX19_03026at 292.271 kb on + strand, within MPMX19_03026at 292.271 kb on + strand, within MPMX19_03026at 292.271 kb on + strand, within MPMX19_03026at 292.400 kb on - strandat 292.414 kb on + strandat 292.414 kb on + strandat 292.414 kb on + strandat 292.414 kb on + strandat 292.415 kb on - strandat 292.415 kb on - strandat 292.415 kb on - strandat 292.415 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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289,771 + MPMX19_03024 0.59 -1.3
289,772 - MPMX19_03024 0.59 -0.5
290,151 + MPMX19_03024 0.85 -0.3
290,151 + MPMX19_03024 0.85 -0.1
290,151 + MPMX19_03024 0.85 +1.0
290,151 + MPMX19_03024 0.85 +2.1
290,151 + MPMX19_03024 0.85 +0.7
290,151 + MPMX19_03024 0.85 -0.5
290,152 - MPMX19_03024 0.85 +0.3
290,152 - MPMX19_03024 0.85 -0.9
290,152 - MPMX19_03024 0.85 -1.0
290,152 - MPMX19_03024 0.85 +0.0
290,152 - MPMX19_03024 0.85 -1.1
290,152 - MPMX19_03024 0.85 -2.5
290,152 - MPMX19_03024 0.85 +0.1
290,152 - MPMX19_03024 0.85 +0.2
290,154 + MPMX19_03024 0.85 -2.1
290,154 + MPMX19_03024 0.85 -1.4
290,155 - MPMX19_03024 0.85 +0.1
290,155 - MPMX19_03024 0.85 +1.1
290,155 - MPMX19_03024 0.85 -0.5
290,155 - MPMX19_03024 0.85 +2.7
290,155 - MPMX19_03024 0.85 -1.2
290,367 + +1.1
290,368 - -1.6
290,368 - -0.5
290,368 - -2.1
290,368 - -0.7
290,368 - -0.2
290,588 + MPMX19_03025 0.15 -0.6
290,588 + MPMX19_03025 0.15 -1.0
290,588 + MPMX19_03025 0.15 -0.8
290,588 + MPMX19_03025 0.15 +0.2
290,588 + MPMX19_03025 0.15 +0.0
290,588 + MPMX19_03025 0.15 -0.2
290,588 + MPMX19_03025 0.15 -2.1
290,588 + MPMX19_03025 0.15 -0.3
290,588 + MPMX19_03025 0.15 -1.7
290,588 + MPMX19_03025 0.15 -2.7
290,588 + MPMX19_03025 0.15 -1.2
290,588 + MPMX19_03025 0.15 +0.1
290,588 + MPMX19_03025 0.15 +0.9
290,588 + MPMX19_03025 0.15 +0.2
290,588 + MPMX19_03025 0.15 -0.7
290,588 + MPMX19_03025 0.15 -0.2
290,588 + MPMX19_03025 0.15 -1.7
290,588 + MPMX19_03025 0.15 +0.4
290,588 + MPMX19_03025 0.15 -0.4
290,588 + MPMX19_03025 0.15 -0.3
290,588 + MPMX19_03025 0.15 -1.5
290,588 + MPMX19_03025 0.15 -1.5
290,589 - MPMX19_03025 0.15 +0.1
290,589 - MPMX19_03025 0.15 -0.5
290,589 - MPMX19_03025 0.15 -0.5
290,589 - MPMX19_03025 0.15 +0.6
290,589 - MPMX19_03025 0.15 +0.8
290,589 - MPMX19_03025 0.15 +0.1
290,589 - MPMX19_03025 0.15 +0.0
290,589 - MPMX19_03025 0.15 +1.0
290,589 - MPMX19_03025 0.15 -1.7
290,589 - MPMX19_03025 0.15 -0.6
290,589 - MPMX19_03025 0.15 -1.2
290,589 - MPMX19_03025 0.15 -0.6
290,589 - MPMX19_03025 0.15 +0.0
290,589 - MPMX19_03025 0.15 +1.0
290,589 - MPMX19_03025 0.15 -0.5
290,589 - MPMX19_03025 0.15 +0.4
290,589 - MPMX19_03025 0.15 -0.6
290,589 - MPMX19_03025 0.15 -1.0
290,589 - MPMX19_03025 0.15 -1.4
290,589 - MPMX19_03025 0.15 -0.1
290,589 - MPMX19_03025 0.15 +0.3
290,589 - MPMX19_03025 0.15 -0.4
290,589 - MPMX19_03025 0.15 +0.7
290,589 - MPMX19_03025 0.15 -0.7
290,589 - MPMX19_03025 0.15 +0.1
290,589 - MPMX19_03025 0.15 -1.8
290,589 - MPMX19_03025 0.15 -0.1
290,589 - MPMX19_03025 0.15 +0.1
290,589 - MPMX19_03025 0.15 +1.1
290,589 - MPMX19_03025 0.15 +0.6
290,589 - MPMX19_03025 0.15 -1.8
290,589 - MPMX19_03025 0.15 -0.2
290,589 - MPMX19_03025 0.15 +0.4
290,589 - MPMX19_03025 0.15 -0.6
290,589 - MPMX19_03025 0.15 -0.5
290,744 + MPMX19_03025 0.29 -0.7
290,744 + MPMX19_03025 0.29 -1.1
290,744 + MPMX19_03025 0.29 +0.2
290,745 - MPMX19_03025 0.29 +0.1
290,745 - MPMX19_03025 0.29 -0.5
290,792 + MPMX19_03025 0.33 +0.1
290,792 + MPMX19_03025 0.33 -1.7
290,792 + MPMX19_03025 0.33 -1.5
290,792 + MPMX19_03025 0.33 -0.0
290,792 + MPMX19_03025 0.33 +0.0
290,793 - MPMX19_03025 0.34 -1.5
290,793 - MPMX19_03025 0.34 +0.7
290,793 - MPMX19_03025 0.34 +0.2
290,793 - MPMX19_03025 0.34 -0.0
290,793 - MPMX19_03025 0.34 +1.4
290,793 - MPMX19_03025 0.34 -0.6
290,807 + MPMX19_03025 0.35 -0.7
290,807 + MPMX19_03025 0.35 -1.8
290,807 + MPMX19_03025 0.35 +0.8
290,807 + MPMX19_03025 0.35 -0.2
290,807 + MPMX19_03025 0.35 -1.5
290,807 + MPMX19_03025 0.35 -1.8
291,020 + MPMX19_03025 0.54 -0.3
291,020 + MPMX19_03025 0.54 -0.2
291,020 + MPMX19_03025 0.54 +0.1
291,020 + MPMX19_03025 0.54 +0.9
291,020 + MPMX19_03025 0.54 -1.3
291,020 + MPMX19_03025 0.54 -1.5
291,020 + MPMX19_03025 0.54 -2.5
291,020 + MPMX19_03025 0.54 -0.3
291,021 - MPMX19_03025 0.54 -1.6
291,021 - MPMX19_03025 0.54 +0.5
291,021 - MPMX19_03025 0.54 -1.8
291,021 - MPMX19_03025 0.54 -1.2
291,021 - MPMX19_03025 0.54 -1.0
291,021 - MPMX19_03025 0.54 -1.5
291,021 - MPMX19_03025 0.54 +0.8
291,021 - MPMX19_03025 0.54 -0.9
291,119 + MPMX19_03025 0.63 -2.7
291,119 + MPMX19_03025 0.63 -1.1
291,119 + MPMX19_03025 0.63 +0.2
291,119 + MPMX19_03025 0.63 -0.9
291,119 + MPMX19_03025 0.63 -0.9
291,119 + MPMX19_03025 0.63 -1.5
291,119 + MPMX19_03025 0.63 +0.8
291,119 + MPMX19_03025 0.63 -1.3
291,119 + MPMX19_03025 0.63 +0.2
291,119 + MPMX19_03025 0.63 +1.3
291,119 + MPMX19_03025 0.63 -0.6
291,120 - MPMX19_03025 0.63 -0.4
291,120 - MPMX19_03025 0.63 +2.1
291,120 - MPMX19_03025 0.63 -2.3
291,120 - MPMX19_03025 0.63 -0.5
291,120 - MPMX19_03025 0.63 -1.2
291,120 - MPMX19_03025 0.63 -0.1
291,120 - MPMX19_03025 0.63 +0.9
291,120 - MPMX19_03025 0.63 +0.1
291,120 - MPMX19_03025 0.63 -0.1
291,120 - MPMX19_03025 0.63 +0.3
291,120 - MPMX19_03025 0.63 -0.1
291,120 - MPMX19_03025 0.63 +1.1
291,120 - MPMX19_03025 0.63 -1.6
291,149 + MPMX19_03025 0.65 +0.2
291,149 + MPMX19_03025 0.65 -1.5
291,149 + MPMX19_03025 0.65 -0.9
291,149 + MPMX19_03025 0.65 -0.9
291,149 + MPMX19_03025 0.65 -1.2
291,149 + MPMX19_03025 0.65 -0.9
291,150 - MPMX19_03025 0.65 -0.2
291,150 - MPMX19_03025 0.65 +0.7
291,150 - MPMX19_03025 0.65 +0.2
291,215 + MPMX19_03025 0.71 -0.5
291,215 + MPMX19_03025 0.71 -0.9
291,215 + MPMX19_03025 0.71 -2.6
291,215 + MPMX19_03025 0.71 +0.1
291,215 + MPMX19_03025 0.71 -0.8
291,215 + MPMX19_03025 0.71 +0.0
291,216 - MPMX19_03025 0.71 -1.2
291,216 - MPMX19_03025 0.71 +0.5
291,216 - MPMX19_03025 0.71 +0.5
291,216 - MPMX19_03025 0.71 +0.9
291,216 - MPMX19_03025 0.71 -0.2
291,536 + +0.5
291,536 + -0.8
291,536 + -0.8
291,537 - -0.0
291,537 - -0.1
291,537 - +1.1
291,537 - -0.2
291,537 - -0.5
291,537 - -0.2
291,537 - -1.4
292,100 + MPMX19_03026 0.64 -0.3
292,100 + MPMX19_03026 0.64 -0.1
292,100 + MPMX19_03026 0.64 +0.5
292,101 - MPMX19_03026 0.65 -0.3
292,101 - MPMX19_03026 0.65 -1.1
292,193 + MPMX19_03026 0.76 +0.5
292,194 - MPMX19_03026 0.76 +0.7
292,194 - MPMX19_03026 0.76 -0.8
292,194 - MPMX19_03026 0.76 -1.6
292,194 - MPMX19_03026 0.76 -0.4
292,271 + MPMX19_03026 0.86 +0.1
292,271 + MPMX19_03026 0.86 +0.5
292,271 + MPMX19_03026 0.86 -1.2
292,400 - -0.3
292,414 + -0.2
292,414 + -0.5
292,414 + -0.5
292,414 + +2.1
292,415 - -0.2
292,415 - +0.0
292,415 - +0.6
292,415 - -0.4

Or see this region's nucleotide sequence