Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03013 and MPMX19_03014 are separated by 150 nucleotides MPMX19_03014 and MPMX19_03015 are separated by 140 nucleotides MPMX19_03015 and MPMX19_03016 are separated by 124 nucleotides
MPMX19_03013: MPMX19_03013 - Aldehyde-alcohol dehydrogenase, at 275,646 to 278,312
_03013
MPMX19_03014: MPMX19_03014 - Transcriptional activatory protein AadR, at 278,463 to 279,227
_03014
MPMX19_03015: MPMX19_03015 - Transcriptional regulatory protein TdiR, at 279,368 to 279,808
_03015
MPMX19_03016: MPMX19_03016 - Response regulator protein TmoT, at 279,933 to 280,631
_03016
Position (kb) 278
279
280 Strain fitness (log2 ratio) -2
-1
0
1
2 at 278.294 kb on + strand at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.894 kb on - strand, within MPMX19_03014 at 278.894 kb on - strand, within MPMX19_03014 at 278.977 kb on + strand, within MPMX19_03014 at 278.977 kb on + strand, within MPMX19_03014 at 278.977 kb on + strand, within MPMX19_03014 at 278.978 kb on - strand, within MPMX19_03014 at 278.978 kb on - strand, within MPMX19_03014 at 278.978 kb on - strand, within MPMX19_03014 at 279.058 kb on + strand, within MPMX19_03014 at 279.059 kb on - strand, within MPMX19_03014 at 279.059 kb on - strand, within MPMX19_03014 at 279.059 kb on - strand, within MPMX19_03014 at 279.176 kb on - strand at 279.294 kb on + strand at 279.294 kb on + strand at 279.294 kb on + strand at 279.295 kb on - strand at 279.330 kb on + strand at 279.330 kb on + strand at 279.330 kb on + strand at 279.330 kb on + strand at 279.330 kb on + strand at 279.330 kb on + strand at 279.330 kb on + strand at 279.330 kb on + strand at 279.330 kb on + strand at 279.330 kb on + strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.331 kb on - strand at 279.334 kb on + strand at 279.334 kb on + strand at 279.334 kb on + strand at 279.334 kb on + strand at 279.335 kb on - strand at 279.335 kb on - strand at 279.335 kb on - strand at 279.335 kb on - strand at 279.335 kb on - strand at 279.335 kb on - strand at 279.348 kb on + strand at 279.352 kb on + strand at 279.352 kb on + strand at 279.352 kb on + strand at 279.352 kb on + strand at 279.352 kb on + strand at 279.352 kb on + strand at 279.352 kb on + strand at 279.352 kb on + strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.353 kb on - strand at 279.358 kb on + strand at 279.358 kb on + strand at 279.358 kb on + strand at 279.358 kb on + strand at 279.358 kb on + strand at 279.359 kb on - strand at 279.359 kb on - strand at 279.359 kb on - strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.362 kb on + strand at 279.363 kb on - strand at 279.363 kb on - strand at 279.363 kb on - strand at 279.363 kb on - strand at 279.363 kb on - strand at 279.363 kb on - strand at 279.366 kb on + strand at 279.366 kb on + strand at 279.366 kb on + strand at 279.366 kb on + strand at 279.366 kb on + strand at 279.366 kb on + strand at 279.366 kb on + strand at 279.367 kb on - strand at 279.367 kb on - strand at 279.367 kb on - strand at 279.367 kb on - strand at 279.367 kb on - strand at 279.367 kb on - strand at 279.367 kb on - strand at 279.829 kb on - strand at 279.829 kb on - strand at 279.870 kb on + strand at 279.870 kb on + strand at 279.870 kb on + strand at 279.871 kb on - strand at 279.871 kb on - strand at 279.871 kb on - strand at 279.871 kb on - strand at 279.893 kb on + strand at 279.893 kb on + strand at 279.894 kb on - strand at 279.895 kb on + strand at 279.895 kb on + strand at 279.895 kb on + strand at 279.895 kb on + strand at 279.895 kb on + strand at 279.895 kb on + strand at 279.895 kb on + strand at 279.895 kb on + strand at 279.895 kb on + strand at 279.909 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 278,294 + +0.5 278,887 + MPMX19_03014 0.55 -1.3 278,887 + MPMX19_03014 0.55 +0.3 278,887 + MPMX19_03014 0.55 +0.4 278,887 + MPMX19_03014 0.55 +0.2 278,887 + MPMX19_03014 0.55 +0.4 278,887 + MPMX19_03014 0.55 -1.1 278,887 + MPMX19_03014 0.55 +0.3 278,887 + MPMX19_03014 0.55 -0.3 278,888 - MPMX19_03014 0.56 +0.4 278,888 - MPMX19_03014 0.56 -1.1 278,888 - MPMX19_03014 0.56 +1.9 278,888 - MPMX19_03014 0.56 -0.1 278,888 - MPMX19_03014 0.56 -1.7 278,888 - MPMX19_03014 0.56 +1.6 278,894 - MPMX19_03014 0.56 -0.5 278,894 - MPMX19_03014 0.56 +0.3 278,977 + MPMX19_03014 0.67 +0.0 278,977 + MPMX19_03014 0.67 -0.8 278,977 + MPMX19_03014 0.67 +1.4 278,978 - MPMX19_03014 0.67 -0.2 278,978 - MPMX19_03014 0.67 -0.9 278,978 - MPMX19_03014 0.67 +0.7 279,058 + MPMX19_03014 0.78 +0.7 279,059 - MPMX19_03014 0.78 +0.2 279,059 - MPMX19_03014 0.78 +0.1 279,059 - MPMX19_03014 0.78 -1.9 279,176 - -0.3 279,294 + -0.8 279,294 + -1.6 279,294 + +0.1 279,295 - +1.3 279,330 + -0.1 279,330 + -1.6 279,330 + +0.4 279,330 + -0.9 279,330 + -0.5 279,330 + -0.3 279,330 + -0.3 279,330 + +0.8 279,330 + -1.2 279,330 + +0.8 279,331 - -0.9 279,331 - +0.1 279,331 - -1.2 279,331 - +0.2 279,331 - -0.7 279,331 - +0.0 279,331 - -0.2 279,331 - -0.7 279,331 - +1.1 279,331 - -1.3 279,331 - +0.3 279,331 - -0.2 279,334 + +0.1 279,334 + +0.4 279,334 + -1.2 279,334 + -1.8 279,335 - -0.1 279,335 - +0.5 279,335 - -0.9 279,335 - -0.9 279,335 - -1.2 279,335 - +1.5 279,348 + -0.3 279,352 + -0.3 279,352 + +0.0 279,352 + +0.1 279,352 + -1.3 279,352 + -0.9 279,352 + +0.7 279,352 + -2.1 279,352 + -1.6 279,353 - +0.4 279,353 - -2.5 279,353 - +1.4 279,353 - -0.4 279,353 - +0.6 279,353 - -1.4 279,353 - -0.2 279,353 - -0.2 279,353 - -1.6 279,353 - -0.7 279,353 - -1.1 279,353 - -0.8 279,358 + -1.4 279,358 + -1.3 279,358 + +0.0 279,358 + +1.7 279,358 + -1.8 279,359 - +1.1 279,359 - -1.4 279,359 - -0.5 279,362 + -0.3 279,362 + -0.2 279,362 + +0.5 279,362 + -1.3 279,362 + -0.2 279,362 + -1.1 279,362 + -1.1 279,362 + +0.3 279,362 + -0.3 279,362 + +0.3 279,362 + -1.6 279,362 + -0.3 279,362 + +0.1 279,362 + +0.4 279,362 + -1.7 279,362 + -1.0 279,362 + -0.8 279,362 + -0.6 279,362 + +0.5 279,363 - -1.2 279,363 - +1.1 279,363 - +0.2 279,363 - -0.3 279,363 - -1.1 279,363 - +0.9 279,366 + -2.0 279,366 + -0.9 279,366 + -0.3 279,366 + +0.3 279,366 + +0.1 279,366 + +0.1 279,366 + -0.8 279,367 - -1.7 279,367 - -0.4 279,367 - -0.7 279,367 - -0.9 279,367 - -1.0 279,367 - +0.5 279,367 - +0.5 279,829 - -2.0 279,829 - +0.7 279,870 + -0.6 279,870 + -1.1 279,870 + +0.8 279,871 - +0.9 279,871 - +0.2 279,871 - +0.5 279,871 - +0.0 279,893 + -1.2 279,893 + +0.7 279,894 - +1.4 279,895 + -0.5 279,895 + +0.3 279,895 + +0.5 279,895 + -0.1 279,895 + -2.6 279,895 + -1.1 279,895 + -0.9 279,895 + -2.1 279,895 + -0.4 279,909 + +0.7
Or see this region's nucleotide sequence