Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03011 and MPMX19_03012 overlap by 61 nucleotides MPMX19_03012 and MPMX19_03013 are separated by 107 nucleotides MPMX19_03013 and MPMX19_03014 are separated by 150 nucleotides
MPMX19_03011: MPMX19_03011 - hypothetical protein, at 274,559 to 275,140
_03011
MPMX19_03012: MPMX19_03012 - hypothetical protein, at 275,080 to 275,538
_03012
MPMX19_03013: MPMX19_03013 - Aldehyde-alcohol dehydrogenase, at 275,646 to 278,312
_03013
MPMX19_03014: MPMX19_03014 - Transcriptional activatory protein AadR, at 278,463 to 279,227
_03014
Position (kb) 275
276
277
278
279 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 274.668 kb on + strand, within MPMX19_03011 at 274.669 kb on - strand, within MPMX19_03011 at 274.848 kb on + strand, within MPMX19_03011 at 274.848 kb on + strand, within MPMX19_03011 at 274.848 kb on + strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.924 kb on - strand, within MPMX19_03011 at 274.924 kb on - strand, within MPMX19_03011 at 274.924 kb on - strand, within MPMX19_03011 at 274.971 kb on + strand, within MPMX19_03011 at 275.505 kb on + strand at 275.506 kb on - strand at 275.506 kb on - strand at 275.506 kb on - strand at 275.506 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.729 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.774 kb on - strand at 276.013 kb on + strand, within MPMX19_03013 at 276.302 kb on - strand, within MPMX19_03013 at 278.294 kb on + strand at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.894 kb on - strand, within MPMX19_03014 at 278.894 kb on - strand, within MPMX19_03014 at 278.977 kb on + strand, within MPMX19_03014 at 278.977 kb on + strand, within MPMX19_03014 at 278.977 kb on + strand, within MPMX19_03014 at 278.978 kb on - strand, within MPMX19_03014 at 278.978 kb on - strand, within MPMX19_03014 at 278.978 kb on - strand, within MPMX19_03014 at 279.058 kb on + strand, within MPMX19_03014 at 279.059 kb on - strand, within MPMX19_03014 at 279.059 kb on - strand, within MPMX19_03014 at 279.059 kb on - strand, within MPMX19_03014 at 279.176 kb on - strand at 279.294 kb on + strand at 279.294 kb on + strand at 279.294 kb on + strand at 279.295 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 274,668 + MPMX19_03011 0.19 -2.1 274,669 - MPMX19_03011 0.19 -0.5 274,848 + MPMX19_03011 0.50 -0.5 274,848 + MPMX19_03011 0.50 +0.8 274,848 + MPMX19_03011 0.50 +1.0 274,849 - MPMX19_03011 0.50 -0.1 274,849 - MPMX19_03011 0.50 -2.0 274,849 - MPMX19_03011 0.50 +0.2 274,849 - MPMX19_03011 0.50 -1.0 274,924 - MPMX19_03011 0.63 -0.1 274,924 - MPMX19_03011 0.63 +3.1 274,924 - MPMX19_03011 0.63 -1.0 274,971 + MPMX19_03011 0.71 +0.4 275,505 + +0.5 275,506 - -2.0 275,506 - +0.3 275,506 - +1.3 275,506 - +0.9 275,717 - -0.5 275,717 - -2.3 275,717 - -1.5 275,717 - -0.0 275,717 - -1.8 275,717 - -0.3 275,729 - -1.6 275,732 - +0.1 275,732 - -0.6 275,732 - -1.7 275,732 - -1.5 275,732 - -0.1 275,732 - -2.3 275,732 - -0.4 275,774 - +0.2 276,013 + MPMX19_03013 0.14 -1.9 276,302 - MPMX19_03013 0.25 -0.5 278,294 + +0.5 278,887 + MPMX19_03014 0.55 -1.3 278,887 + MPMX19_03014 0.55 +0.3 278,887 + MPMX19_03014 0.55 +0.4 278,887 + MPMX19_03014 0.55 +0.2 278,887 + MPMX19_03014 0.55 +0.4 278,887 + MPMX19_03014 0.55 -1.1 278,887 + MPMX19_03014 0.55 +0.3 278,887 + MPMX19_03014 0.55 -0.3 278,888 - MPMX19_03014 0.56 +0.4 278,888 - MPMX19_03014 0.56 -1.1 278,888 - MPMX19_03014 0.56 +1.9 278,888 - MPMX19_03014 0.56 -0.1 278,888 - MPMX19_03014 0.56 -1.7 278,888 - MPMX19_03014 0.56 +1.6 278,894 - MPMX19_03014 0.56 -0.5 278,894 - MPMX19_03014 0.56 +0.3 278,977 + MPMX19_03014 0.67 +0.0 278,977 + MPMX19_03014 0.67 -0.8 278,977 + MPMX19_03014 0.67 +1.4 278,978 - MPMX19_03014 0.67 -0.2 278,978 - MPMX19_03014 0.67 -0.9 278,978 - MPMX19_03014 0.67 +0.7 279,058 + MPMX19_03014 0.78 +0.7 279,059 - MPMX19_03014 0.78 +0.2 279,059 - MPMX19_03014 0.78 +0.1 279,059 - MPMX19_03014 0.78 -1.9 279,176 - -0.3 279,294 + -0.8 279,294 + -1.6 279,294 + +0.1 279,295 - +1.3
Or see this region's nucleotide sequence