Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03010 and MPMX19_03011 are separated by 100 nucleotides MPMX19_03011 and MPMX19_03012 overlap by 61 nucleotides MPMX19_03012 and MPMX19_03013 are separated by 107 nucleotides
MPMX19_03010: MPMX19_03010 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 273,796 to 274,458
_03010
MPMX19_03011: MPMX19_03011 - hypothetical protein, at 274,559 to 275,140
_03011
MPMX19_03012: MPMX19_03012 - hypothetical protein, at 275,080 to 275,538
_03012
MPMX19_03013: MPMX19_03013 - Aldehyde-alcohol dehydrogenase, at 275,646 to 278,312
_03013
Position (kb) 274
275
276 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 273.637 kb on + strand at 273.637 kb on + strand at 273.637 kb on + strand at 273.638 kb on - strand at 273.638 kb on - strand at 273.638 kb on - strand at 273.808 kb on + strand at 273.808 kb on + strand at 273.808 kb on + strand at 273.808 kb on + strand at 273.808 kb on + strand at 273.808 kb on + strand at 273.809 kb on - strand at 274.269 kb on + strand, within MPMX19_03010 at 274.270 kb on - strand, within MPMX19_03010 at 274.561 kb on - strand at 274.668 kb on + strand, within MPMX19_03011 at 274.669 kb on - strand, within MPMX19_03011 at 274.848 kb on + strand, within MPMX19_03011 at 274.848 kb on + strand, within MPMX19_03011 at 274.848 kb on + strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.924 kb on - strand, within MPMX19_03011 at 274.924 kb on - strand, within MPMX19_03011 at 274.924 kb on - strand, within MPMX19_03011 at 274.971 kb on + strand, within MPMX19_03011 at 275.505 kb on + strand at 275.506 kb on - strand at 275.506 kb on - strand at 275.506 kb on - strand at 275.506 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.729 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.774 kb on - strand at 276.013 kb on + strand, within MPMX19_03013
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 273,637 + -0.2 273,637 + -1.7 273,637 + -1.0 273,638 - +0.8 273,638 - -0.0 273,638 - -0.8 273,808 + -0.5 273,808 + -0.9 273,808 + -1.3 273,808 + +0.5 273,808 + -1.0 273,808 + -0.6 273,809 - -1.0 274,269 + MPMX19_03010 0.71 -0.2 274,270 - MPMX19_03010 0.71 -1.3 274,561 - -0.6 274,668 + MPMX19_03011 0.19 -2.1 274,669 - MPMX19_03011 0.19 -0.5 274,848 + MPMX19_03011 0.50 -0.5 274,848 + MPMX19_03011 0.50 +0.8 274,848 + MPMX19_03011 0.50 +1.0 274,849 - MPMX19_03011 0.50 -0.1 274,849 - MPMX19_03011 0.50 -2.0 274,849 - MPMX19_03011 0.50 +0.2 274,849 - MPMX19_03011 0.50 -1.0 274,924 - MPMX19_03011 0.63 -0.1 274,924 - MPMX19_03011 0.63 +3.1 274,924 - MPMX19_03011 0.63 -1.0 274,971 + MPMX19_03011 0.71 +0.4 275,505 + +0.5 275,506 - -2.0 275,506 - +0.3 275,506 - +1.3 275,506 - +0.9 275,717 - -0.5 275,717 - -2.3 275,717 - -1.5 275,717 - -0.0 275,717 - -1.8 275,717 - -0.3 275,729 - -1.6 275,732 - +0.1 275,732 - -0.6 275,732 - -1.7 275,732 - -1.5 275,732 - -0.1 275,732 - -2.3 275,732 - -0.4 275,774 - +0.2 276,013 + MPMX19_03013 0.14 -1.9
Or see this region's nucleotide sequence