Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03002

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03001 and MPMX19_03002 are separated by 108 nucleotidesMPMX19_03002 and MPMX19_03003 overlap by 8 nucleotides MPMX19_03001: MPMX19_03001 - Ribulokinase, at 263,305 to 264,834 _03001 MPMX19_03002: MPMX19_03002 - hypothetical protein, at 264,943 to 265,278 _03002 MPMX19_03003: MPMX19_03003 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 265,271 to 266,587 _03003 Position (kb) 264 265 266Strain fitness (log2 ratio) -2 -1 0 1at 263.979 kb on - strand, within MPMX19_03001at 264.287 kb on + strand, within MPMX19_03001at 264.288 kb on - strand, within MPMX19_03001at 264.288 kb on - strand, within MPMX19_03001at 264.363 kb on - strand, within MPMX19_03001at 264.740 kb on + strandat 264.741 kb on - strandat 264.782 kb on + strandat 264.782 kb on + strandat 264.782 kb on + strandat 264.782 kb on + strandat 264.782 kb on + strandat 264.783 kb on - strandat 264.783 kb on - strandat 264.783 kb on - strandat 264.827 kb on + strandat 264.827 kb on + strandat 264.827 kb on + strandat 264.827 kb on + strandat 264.827 kb on + strandat 264.827 kb on + strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.831 kb on - strandat 264.831 kb on - strandat 264.831 kb on - strandat 264.831 kb on - strandat 264.831 kb on - strandat 264.831 kb on - strandat 264.831 kb on - strandat 264.831 kb on - strandat 264.831 kb on - strandat 264.831 kb on - strandat 264.867 kb on - strandat 264.867 kb on - strandat 264.983 kb on + strand, within MPMX19_03002at 264.983 kb on + strand, within MPMX19_03002at 264.983 kb on + strand, within MPMX19_03002at 264.983 kb on + strand, within MPMX19_03002at 264.983 kb on + strand, within MPMX19_03002at 264.983 kb on + strand, within MPMX19_03002at 264.983 kb on + strand, within MPMX19_03002at 264.983 kb on + strand, within MPMX19_03002at 264.983 kb on + strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 265.082 kb on + strand, within MPMX19_03002at 265.082 kb on + strand, within MPMX19_03002at 265.082 kb on + strand, within MPMX19_03002at 265.082 kb on + strand, within MPMX19_03002at 265.083 kb on - strand, within MPMX19_03002at 265.083 kb on - strand, within MPMX19_03002at 266.004 kb on + strand, within MPMX19_03003at 266.004 kb on + strand, within MPMX19_03003at 266.004 kb on + strand, within MPMX19_03003

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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263,979 - MPMX19_03001 0.44 -0.9
264,287 + MPMX19_03001 0.64 +1.0
264,288 - MPMX19_03001 0.64 +0.4
264,288 - MPMX19_03001 0.64 -1.0
264,363 - MPMX19_03001 0.69 -0.5
264,740 + -0.3
264,741 - -0.1
264,782 + -0.7
264,782 + -0.6
264,782 + +1.2
264,782 + -0.5
264,782 + +1.1
264,783 - +0.2
264,783 - -0.2
264,783 - +0.9
264,827 + -0.2
264,827 + +0.5
264,827 + -0.2
264,827 + -0.8
264,827 + -0.2
264,827 + -0.1
264,828 - -1.1
264,828 - +0.2
264,828 - -0.9
264,828 - -0.5
264,828 - +0.4
264,828 - -1.7
264,828 - +0.5
264,828 - -1.3
264,828 - -1.4
264,828 - -1.1
264,828 - -0.9
264,830 + -1.3
264,830 + -2.5
264,830 + -0.1
264,830 + -0.2
264,830 + -0.6
264,830 + +0.5
264,830 + -0.5
264,830 + +0.0
264,830 + -0.5
264,830 + -0.5
264,830 + -0.2
264,830 + -2.1
264,830 + -1.2
264,831 - -0.2
264,831 - -0.2
264,831 - +0.1
264,831 - -0.1
264,831 - +0.1
264,831 - +0.9
264,831 - -1.7
264,831 - -0.1
264,831 - -1.3
264,831 - -1.3
264,867 - +0.4
264,867 - +0.5
264,983 + MPMX19_03002 0.12 +0.8
264,983 + MPMX19_03002 0.12 -0.8
264,983 + MPMX19_03002 0.12 +0.7
264,983 + MPMX19_03002 0.12 -0.8
264,983 + MPMX19_03002 0.12 +0.2
264,983 + MPMX19_03002 0.12 -0.2
264,983 + MPMX19_03002 0.12 -1.6
264,983 + MPMX19_03002 0.12 -1.3
264,983 + MPMX19_03002 0.12 -1.1
264,984 - MPMX19_03002 0.12 -0.1
264,984 - MPMX19_03002 0.12 -2.4
264,984 - MPMX19_03002 0.12 -0.5
264,984 - MPMX19_03002 0.12 -0.5
264,984 - MPMX19_03002 0.12 -0.9
264,984 - MPMX19_03002 0.12 -1.3
264,984 - MPMX19_03002 0.12 -0.2
264,984 - MPMX19_03002 0.12 -1.0
264,984 - MPMX19_03002 0.12 -1.4
264,984 - MPMX19_03002 0.12 +0.5
264,984 - MPMX19_03002 0.12 -0.2
264,984 - MPMX19_03002 0.12 -0.9
264,984 - MPMX19_03002 0.12 +0.2
264,984 - MPMX19_03002 0.12 -0.9
264,984 - MPMX19_03002 0.12 -0.2
264,984 - MPMX19_03002 0.12 +0.5
264,984 - MPMX19_03002 0.12 +0.4
264,984 - MPMX19_03002 0.12 -1.2
265,082 + MPMX19_03002 0.41 -0.2
265,082 + MPMX19_03002 0.41 -0.3
265,082 + MPMX19_03002 0.41 -0.4
265,082 + MPMX19_03002 0.41 -1.9
265,083 - MPMX19_03002 0.42 +1.1
265,083 - MPMX19_03002 0.42 -1.5
266,004 + MPMX19_03003 0.56 -1.6
266,004 + MPMX19_03003 0.56 +0.8
266,004 + MPMX19_03003 0.56 -1.6

Or see this region's nucleotide sequence