Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02985

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02984 and MPMX19_02985 overlap by 4 nucleotidesMPMX19_02985 and MPMX19_02986 overlap by 4 nucleotidesMPMX19_02986 and MPMX19_02987 are separated by 152 nucleotides MPMX19_02984: MPMX19_02984 - Spermidine/putrescine import ATP-binding protein PotA, at 246,654 to 247,730 _02984 MPMX19_02985: MPMX19_02985 - hypothetical protein, at 247,727 to 248,656 _02985 MPMX19_02986: MPMX19_02986 - Inner membrane ABC transporter permease protein YdcV, at 248,653 to 249,453 _02986 MPMX19_02987: MPMX19_02987 - hypothetical protein, at 249,606 to 249,875 _02987 Position (kb) 247 248 249Strain fitness (log2 ratio) -2 -1 0 1 2at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.927 kb on + strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 246.928 kb on - strand, within MPMX19_02984at 247.053 kb on + strand, within MPMX19_02984at 247.053 kb on + strand, within MPMX19_02984at 247.295 kb on - strand, within MPMX19_02984at 247.341 kb on + strand, within MPMX19_02984at 247.341 kb on + strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.342 kb on - strand, within MPMX19_02984at 247.823 kb on + strand, within MPMX19_02985at 247.823 kb on + strand, within MPMX19_02985at 247.824 kb on - strand, within MPMX19_02985at 247.873 kb on - strand, within MPMX19_02985at 247.919 kb on + strand, within MPMX19_02985at 247.919 kb on + strand, within MPMX19_02985at 247.919 kb on + strand, within MPMX19_02985at 247.919 kb on + strand, within MPMX19_02985at 247.920 kb on - strand, within MPMX19_02985at 247.920 kb on - strand, within MPMX19_02985at 247.920 kb on - strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.979 kb on + strand, within MPMX19_02985at 247.979 kb on + strand, within MPMX19_02985at 247.979 kb on + strand, within MPMX19_02985at 247.979 kb on + strand, within MPMX19_02985at 247.979 kb on + strand, within MPMX19_02985at 247.979 kb on + strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.244 kb on - strand, within MPMX19_02985at 248.244 kb on - strand, within MPMX19_02985at 248.522 kb on + strand, within MPMX19_02985at 248.522 kb on + strand, within MPMX19_02985at 248.522 kb on + strand, within MPMX19_02985at 248.522 kb on + strand, within MPMX19_02985at 248.523 kb on - strand, within MPMX19_02985at 248.523 kb on - strand, within MPMX19_02985at 248.637 kb on - strandat 248.699 kb on + strandat 248.700 kb on - strandat 248.700 kb on - strandat 248.758 kb on + strand, within MPMX19_02986at 248.759 kb on - strand, within MPMX19_02986at 248.759 kb on - strand, within MPMX19_02986at 248.759 kb on - strand, within MPMX19_02986at 248.759 kb on - strand, within MPMX19_02986at 249.319 kb on + strand, within MPMX19_02986at 249.319 kb on + strand, within MPMX19_02986at 249.319 kb on + strand, within MPMX19_02986at 249.319 kb on + strand, within MPMX19_02986at 249.320 kb on - strand, within MPMX19_02986at 249.320 kb on - strand, within MPMX19_02986at 249.320 kb on - strand, within MPMX19_02986at 249.412 kb on + strandat 249.412 kb on + strandat 249.413 kb on - strandat 249.413 kb on - strandat 249.581 kb on - strandat 249.581 kb on - strandat 249.581 kb on - strandat 249.585 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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246,927 + MPMX19_02984 0.25 -0.0
246,927 + MPMX19_02984 0.25 -2.4
246,927 + MPMX19_02984 0.25 -0.7
246,927 + MPMX19_02984 0.25 +0.9
246,927 + MPMX19_02984 0.25 +0.3
246,927 + MPMX19_02984 0.25 -1.8
246,927 + MPMX19_02984 0.25 +0.5
246,927 + MPMX19_02984 0.25 -0.6
246,927 + MPMX19_02984 0.25 +0.9
246,927 + MPMX19_02984 0.25 +1.1
246,927 + MPMX19_02984 0.25 -2.1
246,927 + MPMX19_02984 0.25 +1.1
246,927 + MPMX19_02984 0.25 +0.4
246,927 + MPMX19_02984 0.25 -0.5
246,927 + MPMX19_02984 0.25 -1.8
246,927 + MPMX19_02984 0.25 -0.8
246,927 + MPMX19_02984 0.25 -0.8
246,928 - MPMX19_02984 0.25 -1.1
246,928 - MPMX19_02984 0.25 -1.9
246,928 - MPMX19_02984 0.25 +0.3
246,928 - MPMX19_02984 0.25 +1.1
246,928 - MPMX19_02984 0.25 +0.3
246,928 - MPMX19_02984 0.25 +0.9
246,928 - MPMX19_02984 0.25 +1.1
246,928 - MPMX19_02984 0.25 +0.7
246,928 - MPMX19_02984 0.25 +0.5
246,928 - MPMX19_02984 0.25 -0.6
246,928 - MPMX19_02984 0.25 -0.6
246,928 - MPMX19_02984 0.25 -0.7
246,928 - MPMX19_02984 0.25 -1.8
246,928 - MPMX19_02984 0.25 -0.0
246,928 - MPMX19_02984 0.25 -0.9
246,928 - MPMX19_02984 0.25 -1.6
246,928 - MPMX19_02984 0.25 +0.3
246,928 - MPMX19_02984 0.25 -0.0
246,928 - MPMX19_02984 0.25 -2.6
246,928 - MPMX19_02984 0.25 -0.2
247,053 + MPMX19_02984 0.37 -0.0
247,053 + MPMX19_02984 0.37 +0.7
247,295 - MPMX19_02984 0.60 +0.1
247,341 + MPMX19_02984 0.64 -1.1
247,341 + MPMX19_02984 0.64 -0.1
247,342 - MPMX19_02984 0.64 +0.7
247,342 - MPMX19_02984 0.64 -0.4
247,342 - MPMX19_02984 0.64 +1.8
247,342 - MPMX19_02984 0.64 +0.3
247,342 - MPMX19_02984 0.64 -1.3
247,342 - MPMX19_02984 0.64 -1.3
247,342 - MPMX19_02984 0.64 -1.6
247,823 + MPMX19_02985 0.10 +1.1
247,823 + MPMX19_02985 0.10 -0.4
247,824 - MPMX19_02985 0.10 -0.7
247,873 - MPMX19_02985 0.16 -1.7
247,919 + MPMX19_02985 0.21 -0.4
247,919 + MPMX19_02985 0.21 +1.1
247,919 + MPMX19_02985 0.21 -0.5
247,919 + MPMX19_02985 0.21 -0.4
247,920 - MPMX19_02985 0.21 -1.0
247,920 - MPMX19_02985 0.21 -0.4
247,920 - MPMX19_02985 0.21 -0.4
247,955 + MPMX19_02985 0.25 -1.7
247,955 + MPMX19_02985 0.25 -0.9
247,955 + MPMX19_02985 0.25 -0.5
247,955 + MPMX19_02985 0.25 -0.2
247,955 + MPMX19_02985 0.25 +0.2
247,955 + MPMX19_02985 0.25 -0.4
247,955 + MPMX19_02985 0.25 -0.1
247,955 + MPMX19_02985 0.25 -2.0
247,956 - MPMX19_02985 0.25 -0.8
247,956 - MPMX19_02985 0.25 -1.1
247,956 - MPMX19_02985 0.25 -1.5
247,956 - MPMX19_02985 0.25 +0.9
247,956 - MPMX19_02985 0.25 -1.7
247,956 - MPMX19_02985 0.25 +1.4
247,956 - MPMX19_02985 0.25 -0.1
247,956 - MPMX19_02985 0.25 -0.4
247,956 - MPMX19_02985 0.25 -2.1
247,956 - MPMX19_02985 0.25 -0.3
247,956 - MPMX19_02985 0.25 -0.5
247,979 + MPMX19_02985 0.27 -2.0
247,979 + MPMX19_02985 0.27 -1.2
247,979 + MPMX19_02985 0.27 +0.2
247,979 + MPMX19_02985 0.27 -1.0
247,979 + MPMX19_02985 0.27 -0.9
247,979 + MPMX19_02985 0.27 +0.5
247,980 - MPMX19_02985 0.27 -1.6
247,980 - MPMX19_02985 0.27 -1.0
247,980 - MPMX19_02985 0.27 -0.7
247,980 - MPMX19_02985 0.27 -1.4
247,980 - MPMX19_02985 0.27 -0.7
247,980 - MPMX19_02985 0.27 -1.1
247,980 - MPMX19_02985 0.27 -0.4
247,980 - MPMX19_02985 0.27 -0.2
248,063 + MPMX19_02985 0.36 -1.3
248,063 + MPMX19_02985 0.36 -1.5
248,063 + MPMX19_02985 0.36 -1.4
248,063 + MPMX19_02985 0.36 -0.8
248,063 + MPMX19_02985 0.36 -1.1
248,063 + MPMX19_02985 0.36 -0.7
248,063 + MPMX19_02985 0.36 -0.5
248,063 + MPMX19_02985 0.36 -2.1
248,063 + MPMX19_02985 0.36 -1.4
248,063 + MPMX19_02985 0.36 -1.6
248,064 - MPMX19_02985 0.36 -0.4
248,064 - MPMX19_02985 0.36 -0.9
248,064 - MPMX19_02985 0.36 +0.3
248,064 - MPMX19_02985 0.36 +0.2
248,064 - MPMX19_02985 0.36 +0.9
248,064 - MPMX19_02985 0.36 -0.5
248,064 - MPMX19_02985 0.36 -0.4
248,243 + MPMX19_02985 0.55 -0.3
248,243 + MPMX19_02985 0.55 -0.4
248,243 + MPMX19_02985 0.55 +0.3
248,243 + MPMX19_02985 0.55 +0.0
248,243 + MPMX19_02985 0.55 -2.1
248,243 + MPMX19_02985 0.55 +0.2
248,243 + MPMX19_02985 0.55 -0.7
248,243 + MPMX19_02985 0.55 -1.4
248,243 + MPMX19_02985 0.55 -1.5
248,243 + MPMX19_02985 0.55 -1.8
248,243 + MPMX19_02985 0.55 -2.1
248,244 - MPMX19_02985 0.56 -1.1
248,244 - MPMX19_02985 0.56 -1.7
248,522 + MPMX19_02985 0.85 -0.0
248,522 + MPMX19_02985 0.85 -1.9
248,522 + MPMX19_02985 0.85 -1.2
248,522 + MPMX19_02985 0.85 -0.1
248,523 - MPMX19_02985 0.86 -0.2
248,523 - MPMX19_02985 0.86 +0.3
248,637 - -1.5
248,699 + -0.9
248,700 - -0.6
248,700 - -0.8
248,758 + MPMX19_02986 0.13 +1.1
248,759 - MPMX19_02986 0.13 -1.1
248,759 - MPMX19_02986 0.13 -0.8
248,759 - MPMX19_02986 0.13 +0.1
248,759 - MPMX19_02986 0.13 +0.2
249,319 + MPMX19_02986 0.83 +0.5
249,319 + MPMX19_02986 0.83 -0.2
249,319 + MPMX19_02986 0.83 +0.8
249,319 + MPMX19_02986 0.83 -0.4
249,320 - MPMX19_02986 0.83 -0.0
249,320 - MPMX19_02986 0.83 -0.6
249,320 - MPMX19_02986 0.83 -2.1
249,412 + -0.5
249,412 + +0.2
249,413 - +0.8
249,413 - +0.3
249,581 - -0.3
249,581 - -0.7
249,581 - -0.8
249,585 + -0.2

Or see this region's nucleotide sequence