Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02978 and MPMX19_02979 are separated by 13 nucleotides MPMX19_02979 and MPMX19_02980 overlap by 4 nucleotides MPMX19_02980 and MPMX19_02981 overlap by 20 nucleotides
MPMX19_02978: MPMX19_02978 - Hydrogen cyanide synthase subunit HcnC, at 239,784 to 240,926
_02978
MPMX19_02979: MPMX19_02979 - Hydrogen cyanide synthase subunit HcnB, at 240,940 to 242,397
_02979
MPMX19_02980: MPMX19_02980 - Hydrogen cyanide synthase subunit HcnA, at 242,394 to 242,696
_02980
MPMX19_02981: MPMX19_02981 - Hydrogen cyanide synthase subunit HcnC, at 242,677 to 243,810
_02981
Position (kb) 240
241
242
243 Strain fitness (log2 ratio) -2
-1
0
1 at 240.354 kb on + strand, within MPMX19_02978 at 240.354 kb on + strand, within MPMX19_02978 at 240.354 kb on + strand, within MPMX19_02978 at 240.354 kb on + strand, within MPMX19_02978 at 240.355 kb on - strand, within MPMX19_02978 at 240.355 kb on - strand, within MPMX19_02978 at 240.355 kb on - strand, within MPMX19_02978 at 240.355 kb on - strand, within MPMX19_02978 at 240.355 kb on - strand, within MPMX19_02978 at 241.035 kb on - strand at 241.037 kb on + strand at 241.037 kb on + strand at 241.038 kb on - strand at 241.038 kb on - strand at 241.038 kb on - strand at 241.268 kb on + strand, within MPMX19_02979 at 241.268 kb on + strand, within MPMX19_02979 at 241.268 kb on + strand, within MPMX19_02979 at 241.268 kb on + strand, within MPMX19_02979 at 241.268 kb on + strand, within MPMX19_02979 at 241.268 kb on + strand, within MPMX19_02979 at 241.269 kb on - strand, within MPMX19_02979 at 241.269 kb on - strand, within MPMX19_02979 at 241.269 kb on - strand, within MPMX19_02979 at 241.269 kb on - strand, within MPMX19_02979 at 241.631 kb on + strand, within MPMX19_02979 at 241.632 kb on - strand, within MPMX19_02979 at 241.632 kb on - strand, within MPMX19_02979 at 241.856 kb on + strand, within MPMX19_02979 at 241.856 kb on + strand, within MPMX19_02979 at 241.856 kb on + strand, within MPMX19_02979 at 241.856 kb on + strand, within MPMX19_02979 at 241.856 kb on + strand, within MPMX19_02979 at 241.857 kb on - strand, within MPMX19_02979 at 241.857 kb on - strand, within MPMX19_02979 at 242.259 kb on - strand at 242.259 kb on - strand at 242.375 kb on - strand at 242.506 kb on + strand, within MPMX19_02980 at 242.507 kb on - strand, within MPMX19_02980 at 242.507 kb on - strand, within MPMX19_02980 at 242.528 kb on - strand, within MPMX19_02980 at 242.846 kb on + strand, within MPMX19_02981 at 242.846 kb on + strand, within MPMX19_02981 at 242.847 kb on - strand, within MPMX19_02981 at 243.044 kb on + strand, within MPMX19_02981 at 243.044 kb on + strand, within MPMX19_02981 at 243.045 kb on - strand, within MPMX19_02981 at 243.045 kb on - strand, within MPMX19_02981 at 243.045 kb on - strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 240,354 + MPMX19_02978 0.50 +0.1 240,354 + MPMX19_02978 0.50 -0.2 240,354 + MPMX19_02978 0.50 +0.4 240,354 + MPMX19_02978 0.50 -1.1 240,355 - MPMX19_02978 0.50 +0.1 240,355 - MPMX19_02978 0.50 -0.5 240,355 - MPMX19_02978 0.50 -0.9 240,355 - MPMX19_02978 0.50 -0.9 240,355 - MPMX19_02978 0.50 +0.1 241,035 - -0.2 241,037 + +0.8 241,037 + +0.1 241,038 - -0.2 241,038 - +0.5 241,038 - -1.7 241,268 + MPMX19_02979 0.22 -0.7 241,268 + MPMX19_02979 0.22 -0.2 241,268 + MPMX19_02979 0.22 -0.7 241,268 + MPMX19_02979 0.22 -1.9 241,268 + MPMX19_02979 0.22 -0.2 241,268 + MPMX19_02979 0.22 -2.1 241,269 - MPMX19_02979 0.23 -0.8 241,269 - MPMX19_02979 0.23 -0.1 241,269 - MPMX19_02979 0.23 +1.2 241,269 - MPMX19_02979 0.23 +0.3 241,631 + MPMX19_02979 0.47 -2.5 241,632 - MPMX19_02979 0.47 -1.4 241,632 - MPMX19_02979 0.47 -0.9 241,856 + MPMX19_02979 0.63 -0.8 241,856 + MPMX19_02979 0.63 +1.4 241,856 + MPMX19_02979 0.63 -0.9 241,856 + MPMX19_02979 0.63 -1.1 241,856 + MPMX19_02979 0.63 +0.4 241,857 - MPMX19_02979 0.63 -1.5 241,857 - MPMX19_02979 0.63 -1.1 242,259 - -0.0 242,259 - -1.6 242,375 - -1.2 242,506 + MPMX19_02980 0.37 -1.7 242,507 - MPMX19_02980 0.37 -2.5 242,507 - MPMX19_02980 0.37 -1.5 242,528 - MPMX19_02980 0.44 -2.1 242,846 + MPMX19_02981 0.15 -1.1 242,846 + MPMX19_02981 0.15 +0.1 242,847 - MPMX19_02981 0.15 -0.2 243,044 + MPMX19_02981 0.32 -0.2 243,044 + MPMX19_02981 0.32 -0.9 243,045 - MPMX19_02981 0.32 -0.9 243,045 - MPMX19_02981 0.32 -1.6 243,045 - MPMX19_02981 0.32 -0.2 243,347 + MPMX19_02981 0.59 -0.0 243,347 + MPMX19_02981 0.59 -1.5 243,347 + MPMX19_02981 0.59 -1.2 243,347 + MPMX19_02981 0.59 -0.4 243,347 + MPMX19_02981 0.59 -2.2 243,347 + MPMX19_02981 0.59 -0.8 243,347 + MPMX19_02981 0.59 -2.2 243,347 + MPMX19_02981 0.59 -1.7 243,348 - MPMX19_02981 0.59 -2.1 243,348 - MPMX19_02981 0.59 -0.5 243,348 - MPMX19_02981 0.59 -1.8 243,348 - MPMX19_02981 0.59 -0.5 243,348 - MPMX19_02981 0.59 -0.2 243,348 - MPMX19_02981 0.59 -1.1 243,348 - MPMX19_02981 0.59 -2.0
Or see this region's nucleotide sequence