Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02965

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02962 and MPMX19_02963 are separated by 246 nucleotidesMPMX19_02963 and MPMX19_02964 overlap by 1 nucleotidesMPMX19_02964 and MPMX19_02965 are separated by 30 nucleotidesMPMX19_02965 and MPMX19_02966 are separated by 249 nucleotides MPMX19_02962: MPMX19_02962 - hypothetical protein, at 223,362 to 224,165 _02962 MPMX19_02963: MPMX19_02963 - hypothetical protein, at 224,412 to 224,672 _02963 MPMX19_02964: MPMX19_02964 - hypothetical protein, at 224,672 to 224,851 _02964 MPMX19_02965: MPMX19_02965 - hypothetical protein, at 224,882 to 225,073 _02965 MPMX19_02966: MPMX19_02966 - Carboxylesterase NlhH, at 225,323 to 226,096 _02966 Position (kb) 224 225 226Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 223.885 kb on - strand, within MPMX19_02962at 223.959 kb on + strand, within MPMX19_02962at 224.013 kb on + strand, within MPMX19_02962at 224.013 kb on + strand, within MPMX19_02962at 224.014 kb on - strand, within MPMX19_02962at 224.014 kb on - strand, within MPMX19_02962at 224.014 kb on - strand, within MPMX19_02962at 224.014 kb on - strand, within MPMX19_02962at 224.055 kb on + strand, within MPMX19_02962at 224.056 kb on - strand, within MPMX19_02962at 224.056 kb on - strand, within MPMX19_02962at 224.135 kb on + strandat 224.136 kb on - strandat 224.177 kb on - strandat 224.185 kb on + strandat 224.185 kb on + strandat 224.185 kb on + strandat 224.186 kb on - strandat 224.186 kb on - strandat 224.186 kb on - strandat 224.186 kb on - strandat 224.187 kb on + strandat 224.187 kb on + strandat 224.187 kb on + strandat 224.188 kb on - strandat 224.188 kb on - strandat 224.201 kb on - strandat 224.201 kb on - strandat 224.201 kb on - strandat 224.204 kb on + strandat 224.204 kb on + strandat 224.205 kb on - strandat 224.205 kb on - strandat 224.205 kb on - strandat 224.205 kb on - strandat 224.279 kb on + strandat 224.279 kb on + strandat 224.279 kb on + strandat 224.279 kb on + strandat 224.280 kb on - strandat 224.280 kb on - strandat 224.330 kb on - strandat 224.330 kb on - strandat 224.371 kb on - strandat 224.371 kb on - strandat 224.444 kb on + strand, within MPMX19_02963at 224.488 kb on + strand, within MPMX19_02963at 224.489 kb on - strand, within MPMX19_02963at 224.489 kb on - strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.508 kb on + strand, within MPMX19_02963at 224.508 kb on + strand, within MPMX19_02963at 224.508 kb on + strand, within MPMX19_02963at 224.509 kb on - strand, within MPMX19_02963at 224.509 kb on - strand, within MPMX19_02963at 224.635 kb on + strand, within MPMX19_02963at 224.636 kb on - strand, within MPMX19_02963at 224.788 kb on - strand, within MPMX19_02964at 224.852 kb on - strandat 224.873 kb on - strandat 224.873 kb on - strandat 224.873 kb on - strandat 224.942 kb on - strand, within MPMX19_02965at 224.942 kb on - strand, within MPMX19_02965at 224.962 kb on + strand, within MPMX19_02965at 224.963 kb on - strand, within MPMX19_02965at 224.963 kb on - strand, within MPMX19_02965at 224.964 kb on + strand, within MPMX19_02965at 224.964 kb on + strand, within MPMX19_02965at 224.964 kb on + strand, within MPMX19_02965at 224.965 kb on - strand, within MPMX19_02965at 224.965 kb on - strand, within MPMX19_02965at 224.965 kb on - strand, within MPMX19_02965at 224.965 kb on - strand, within MPMX19_02965at 224.965 kb on - strand, within MPMX19_02965at 225.067 kb on - strandat 225.092 kb on + strandat 225.093 kb on - strandat 225.093 kb on - strandat 225.093 kb on - strandat 225.093 kb on - strandat 225.093 kb on - strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.170 kb on - strandat 225.198 kb on - strandat 225.252 kb on + strandat 225.252 kb on + strandat 225.253 kb on - strandat 225.253 kb on - strandat 225.253 kb on - strandat 225.258 kb on - strandat 225.276 kb on + strandat 225.276 kb on + strandat 225.277 kb on - strandat 225.277 kb on - strandat 225.277 kb on - strandat 225.277 kb on - strandat 225.277 kb on - strandat 225.277 kb on - strandat 225.277 kb on - strandat 225.419 kb on + strand, within MPMX19_02966at 225.419 kb on + strand, within MPMX19_02966at 225.419 kb on + strand, within MPMX19_02966at 225.419 kb on + strand, within MPMX19_02966at 225.420 kb on - strand, within MPMX19_02966at 225.420 kb on - strand, within MPMX19_02966at 225.420 kb on - strand, within MPMX19_02966at 225.420 kb on - strand, within MPMX19_02966at 225.420 kb on - strand, within MPMX19_02966at 225.521 kb on + strand, within MPMX19_02966at 225.794 kb on + strand, within MPMX19_02966at 225.803 kb on + strand, within MPMX19_02966at 225.803 kb on + strand, within MPMX19_02966at 225.804 kb on - strand, within MPMX19_02966at 225.804 kb on - strand, within MPMX19_02966at 225.836 kb on + strand, within MPMX19_02966at 225.837 kb on - strand, within MPMX19_02966at 225.837 kb on - strand, within MPMX19_02966at 225.837 kb on - strand, within MPMX19_02966at 225.837 kb on - strand, within MPMX19_02966at 225.837 kb on - strand, within MPMX19_02966at 225.932 kb on + strand, within MPMX19_02966at 225.932 kb on + strand, within MPMX19_02966at 225.932 kb on + strand, within MPMX19_02966at 225.933 kb on - strand, within MPMX19_02966at 225.933 kb on - strand, within MPMX19_02966at 225.933 kb on - strand, within MPMX19_02966at 225.933 kb on - strand, within MPMX19_02966at 225.933 kb on - strand, within MPMX19_02966

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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223,885 - MPMX19_02962 0.65 -1.3
223,959 + MPMX19_02962 0.74 -0.8
224,013 + MPMX19_02962 0.81 -0.9
224,013 + MPMX19_02962 0.81 -0.2
224,014 - MPMX19_02962 0.81 +0.2
224,014 - MPMX19_02962 0.81 -0.9
224,014 - MPMX19_02962 0.81 -0.4
224,014 - MPMX19_02962 0.81 -1.5
224,055 + MPMX19_02962 0.86 -0.3
224,056 - MPMX19_02962 0.86 -0.8
224,056 - MPMX19_02962 0.86 -0.5
224,135 + +1.0
224,136 - +0.7
224,177 - -1.3
224,185 + -1.5
224,185 + -1.6
224,185 + +0.4
224,186 - +0.8
224,186 - +0.4
224,186 - -2.0
224,186 - -0.7
224,187 + -0.5
224,187 + -0.6
224,187 + -0.8
224,188 - +0.5
224,188 - -0.1
224,201 - -1.4
224,201 - -0.1
224,201 - -1.2
224,204 + -1.8
224,204 + +0.5
224,205 - -0.8
224,205 - -0.1
224,205 - +0.2
224,205 - +1.4
224,279 + -0.7
224,279 + -2.0
224,279 + +0.8
224,279 + -0.1
224,280 - -1.1
224,280 - -3.0
224,330 - -1.4
224,330 - -2.3
224,371 - -1.1
224,371 - -2.1
224,444 + MPMX19_02963 0.12 -0.9
224,488 + MPMX19_02963 0.29 +0.1
224,489 - MPMX19_02963 0.30 +1.1
224,489 - MPMX19_02963 0.30 -0.9
224,506 + MPMX19_02963 0.36 -1.6
224,506 + MPMX19_02963 0.36 -1.2
224,506 + MPMX19_02963 0.36 -0.5
224,506 + MPMX19_02963 0.36 -1.2
224,506 + MPMX19_02963 0.36 +0.5
224,506 + MPMX19_02963 0.36 -1.1
224,506 + MPMX19_02963 0.36 -1.1
224,506 + MPMX19_02963 0.36 +0.4
224,506 + MPMX19_02963 0.36 +1.1
224,506 + MPMX19_02963 0.36 -1.5
224,506 + MPMX19_02963 0.36 -1.7
224,506 + MPMX19_02963 0.36 +0.5
224,506 + MPMX19_02963 0.36 -0.2
224,506 + MPMX19_02963 0.36 -2.7
224,506 + MPMX19_02963 0.36 +3.3
224,506 + MPMX19_02963 0.36 +0.4
224,507 - MPMX19_02963 0.36 +0.4
224,507 - MPMX19_02963 0.36 -0.8
224,507 - MPMX19_02963 0.36 -1.0
224,507 - MPMX19_02963 0.36 -1.1
224,507 - MPMX19_02963 0.36 -2.5
224,507 - MPMX19_02963 0.36 -1.4
224,507 - MPMX19_02963 0.36 -0.1
224,507 - MPMX19_02963 0.36 -0.6
224,507 - MPMX19_02963 0.36 -1.9
224,507 - MPMX19_02963 0.36 -2.1
224,508 + MPMX19_02963 0.37 -0.2
224,508 + MPMX19_02963 0.37 +0.3
224,508 + MPMX19_02963 0.37 +0.1
224,509 - MPMX19_02963 0.37 -1.6
224,509 - MPMX19_02963 0.37 -1.5
224,635 + MPMX19_02963 0.85 +1.3
224,636 - MPMX19_02963 0.86 -1.6
224,788 - MPMX19_02964 0.64 -1.4
224,852 - -1.3
224,873 - -0.1
224,873 - -0.7
224,873 - -0.2
224,942 - MPMX19_02965 0.31 -1.8
224,942 - MPMX19_02965 0.31 -1.1
224,962 + MPMX19_02965 0.42 -1.3
224,963 - MPMX19_02965 0.42 -0.5
224,963 - MPMX19_02965 0.42 -0.3
224,964 + MPMX19_02965 0.43 -1.2
224,964 + MPMX19_02965 0.43 -1.1
224,964 + MPMX19_02965 0.43 +0.9
224,965 - MPMX19_02965 0.43 -1.1
224,965 - MPMX19_02965 0.43 -0.0
224,965 - MPMX19_02965 0.43 -0.5
224,965 - MPMX19_02965 0.43 -1.7
224,965 - MPMX19_02965 0.43 -1.6
225,067 - -0.9
225,092 + +0.4
225,093 - -3.5
225,093 - -1.4
225,093 - +1.0
225,093 - -0.8
225,093 - -0.0
225,110 + -0.2
225,110 + -0.8
225,110 + -0.1
225,110 + -0.1
225,110 + -0.6
225,110 + -0.3
225,110 + -1.5
225,110 + -0.0
225,110 + +1.1
225,110 + -2.1
225,110 + -0.1
225,110 + -1.8
225,110 + -1.4
225,110 + +0.5
225,111 - -0.2
225,111 - -0.7
225,111 - -1.5
225,111 - +0.1
225,111 - -1.0
225,111 - -1.2
225,111 - -1.7
225,111 - -2.0
225,112 + -0.5
225,112 + +0.5
225,112 + -1.1
225,112 + -2.0
225,112 + -0.8
225,112 + +0.5
225,112 + -1.1
225,112 + -0.3
225,112 + -0.0
225,112 + -0.5
225,112 + +0.4
225,112 + +0.2
225,112 + -1.4
225,112 + -0.3
225,112 + +0.5
225,112 + +1.1
225,112 + -1.5
225,113 - -0.4
225,113 - +0.0
225,113 - -0.4
225,113 - -0.9
225,113 - -1.0
225,113 - -0.7
225,113 - +0.2
225,113 - -0.9
225,113 - -1.8
225,113 - -1.5
225,170 - +1.1
225,198 - +0.5
225,252 + +0.8
225,252 + -0.7
225,253 - -2.1
225,253 - -0.4
225,253 - -2.0
225,258 - -1.5
225,276 + -1.8
225,276 + -2.5
225,277 - -1.8
225,277 - -0.2
225,277 - -0.7
225,277 - -0.1
225,277 - -1.2
225,277 - -1.1
225,277 - -0.7
225,419 + MPMX19_02966 0.12 -2.4
225,419 + MPMX19_02966 0.12 -0.1
225,419 + MPMX19_02966 0.12 -0.2
225,419 + MPMX19_02966 0.12 -0.2
225,420 - MPMX19_02966 0.13 -3.3
225,420 - MPMX19_02966 0.13 -1.3
225,420 - MPMX19_02966 0.13 +0.2
225,420 - MPMX19_02966 0.13 -1.6
225,420 - MPMX19_02966 0.13 -0.9
225,521 + MPMX19_02966 0.26 -1.0
225,794 + MPMX19_02966 0.61 +0.2
225,803 + MPMX19_02966 0.62 -0.4
225,803 + MPMX19_02966 0.62 +1.3
225,804 - MPMX19_02966 0.62 +1.1
225,804 - MPMX19_02966 0.62 -2.3
225,836 + MPMX19_02966 0.66 +0.1
225,837 - MPMX19_02966 0.66 -1.4
225,837 - MPMX19_02966 0.66 -0.3
225,837 - MPMX19_02966 0.66 -0.9
225,837 - MPMX19_02966 0.66 -1.3
225,837 - MPMX19_02966 0.66 -0.4
225,932 + MPMX19_02966 0.79 -0.6
225,932 + MPMX19_02966 0.79 +0.1
225,932 + MPMX19_02966 0.79 -1.6
225,933 - MPMX19_02966 0.79 -1.7
225,933 - MPMX19_02966 0.79 -0.3
225,933 - MPMX19_02966 0.79 +0.1
225,933 - MPMX19_02966 0.79 +0.1
225,933 - MPMX19_02966 0.79 -1.8

Or see this region's nucleotide sequence