Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02958

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02956 and MPMX19_02957 are separated by 31 nucleotidesMPMX19_02957 and MPMX19_02958 are separated by 21 nucleotidesMPMX19_02958 and MPMX19_02959 are separated by 3 nucleotides MPMX19_02956: MPMX19_02956 - hypothetical protein, at 214,995 to 216,080 _02956 MPMX19_02957: MPMX19_02957 - Ribokinase, at 216,112 to 217,035 _02957 MPMX19_02958: MPMX19_02958 - Ribulokinase, at 217,057 to 218,697 _02958 MPMX19_02959: MPMX19_02959 - HTH-type transcriptional regulator DmlR, at 218,701 to 219,687 _02959 Position (kb) 217 218 219Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 216.084 kb on - strandat 216.104 kb on + strandat 216.105 kb on - strandat 216.160 kb on + strandat 216.160 kb on + strandat 216.160 kb on + strandat 216.160 kb on + strandat 216.160 kb on + strandat 216.160 kb on + strandat 216.160 kb on + strandat 216.161 kb on - strandat 216.161 kb on - strandat 216.161 kb on - strandat 216.161 kb on - strandat 216.161 kb on - strandat 216.550 kb on + strand, within MPMX19_02957at 216.550 kb on + strand, within MPMX19_02957at 216.550 kb on + strand, within MPMX19_02957at 216.550 kb on + strand, within MPMX19_02957at 216.550 kb on + strand, within MPMX19_02957at 216.550 kb on + strand, within MPMX19_02957at 216.550 kb on + strand, within MPMX19_02957at 216.550 kb on + strand, within MPMX19_02957at 216.550 kb on + strand, within MPMX19_02957at 216.550 kb on + strand, within MPMX19_02957at 216.551 kb on - strand, within MPMX19_02957at 216.551 kb on - strand, within MPMX19_02957at 216.551 kb on - strand, within MPMX19_02957at 216.551 kb on - strand, within MPMX19_02957at 216.551 kb on - strand, within MPMX19_02957at 216.551 kb on - strand, within MPMX19_02957at 216.551 kb on - strand, within MPMX19_02957at 216.551 kb on - strand, within MPMX19_02957at 216.898 kb on + strand, within MPMX19_02957at 216.899 kb on - strand, within MPMX19_02957at 216.901 kb on + strand, within MPMX19_02957at 216.901 kb on + strand, within MPMX19_02957at 216.901 kb on + strand, within MPMX19_02957at 216.901 kb on + strand, within MPMX19_02957at 216.901 kb on + strand, within MPMX19_02957at 216.901 kb on + strand, within MPMX19_02957at 216.901 kb on + strand, within MPMX19_02957at 216.902 kb on - strand, within MPMX19_02957at 216.902 kb on - strand, within MPMX19_02957at 216.949 kb on + strandat 216.950 kb on - strandat 216.950 kb on - strandat 216.991 kb on + strandat 217.033 kb on + strandat 217.033 kb on + strandat 217.444 kb on + strand, within MPMX19_02958at 217.444 kb on + strand, within MPMX19_02958at 217.444 kb on + strand, within MPMX19_02958at 217.444 kb on + strand, within MPMX19_02958at 217.445 kb on - strand, within MPMX19_02958at 217.621 kb on + strand, within MPMX19_02958at 217.621 kb on + strand, within MPMX19_02958at 217.621 kb on + strand, within MPMX19_02958at 217.621 kb on + strand, within MPMX19_02958at 217.621 kb on + strand, within MPMX19_02958at 217.621 kb on + strand, within MPMX19_02958at 217.621 kb on + strand, within MPMX19_02958at 217.621 kb on + strand, within MPMX19_02958at 217.622 kb on - strand, within MPMX19_02958at 217.622 kb on - strand, within MPMX19_02958at 217.622 kb on - strand, within MPMX19_02958at 217.622 kb on - strand, within MPMX19_02958at 217.622 kb on - strand, within MPMX19_02958at 217.654 kb on + strand, within MPMX19_02958at 217.655 kb on - strand, within MPMX19_02958at 217.655 kb on - strand, within MPMX19_02958at 217.655 kb on - strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.924 kb on - strand, within MPMX19_02958at 217.924 kb on - strand, within MPMX19_02958at 217.924 kb on - strand, within MPMX19_02958at 217.924 kb on - strand, within MPMX19_02958at 217.924 kb on - strand, within MPMX19_02958at 217.924 kb on - strand, within MPMX19_02958at 217.975 kb on + strand, within MPMX19_02958at 217.975 kb on + strand, within MPMX19_02958at 217.976 kb on - strand, within MPMX19_02958at 217.976 kb on - strand, within MPMX19_02958at 217.976 kb on - strand, within MPMX19_02958at 218.116 kb on + strand, within MPMX19_02958at 218.117 kb on - strand, within MPMX19_02958at 218.117 kb on - strand, within MPMX19_02958at 218.117 kb on - strand, within MPMX19_02958at 218.305 kb on + strand, within MPMX19_02958at 218.305 kb on + strand, within MPMX19_02958at 218.306 kb on - strand, within MPMX19_02958at 218.306 kb on - strand, within MPMX19_02958at 218.306 kb on - strand, within MPMX19_02958at 218.332 kb on + strand, within MPMX19_02958at 218.332 kb on + strand, within MPMX19_02958at 218.333 kb on - strand, within MPMX19_02958at 218.374 kb on + strand, within MPMX19_02958at 218.374 kb on + strand, within MPMX19_02958at 218.375 kb on - strand, within MPMX19_02958at 218.614 kb on + strandat 218.615 kb on - strandat 218.629 kb on + strandat 218.629 kb on + strandat 218.629 kb on + strandat 218.871 kb on - strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.113 kb on + strand, within MPMX19_02959at 219.113 kb on + strand, within MPMX19_02959at 219.114 kb on - strand, within MPMX19_02959at 219.114 kb on - strand, within MPMX19_02959at 219.176 kb on + strand, within MPMX19_02959at 219.177 kb on - strand, within MPMX19_02959at 219.177 kb on - strand, within MPMX19_02959at 219.335 kb on + strand, within MPMX19_02959at 219.335 kb on + strand, within MPMX19_02959at 219.336 kb on - strand, within MPMX19_02959at 219.336 kb on - strand, within MPMX19_02959at 219.336 kb on - strand, within MPMX19_02959at 219.336 kb on - strand, within MPMX19_02959at 219.494 kb on + strand, within MPMX19_02959at 219.494 kb on + strand, within MPMX19_02959at 219.495 kb on - strand, within MPMX19_02959at 219.495 kb on - strand, within MPMX19_02959

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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216,084 - +0.4
216,104 + -1.2
216,105 - -0.1
216,160 + -0.5
216,160 + +0.1
216,160 + +0.6
216,160 + -0.4
216,160 + -0.7
216,160 + -0.3
216,160 + -0.4
216,161 - -1.4
216,161 - -1.5
216,161 - +0.7
216,161 - +0.4
216,161 - +0.1
216,550 + MPMX19_02957 0.47 -0.0
216,550 + MPMX19_02957 0.47 -0.9
216,550 + MPMX19_02957 0.47 -0.5
216,550 + MPMX19_02957 0.47 +0.8
216,550 + MPMX19_02957 0.47 -0.9
216,550 + MPMX19_02957 0.47 -1.2
216,550 + MPMX19_02957 0.47 -1.4
216,550 + MPMX19_02957 0.47 -0.1
216,550 + MPMX19_02957 0.47 -0.6
216,550 + MPMX19_02957 0.47 -2.5
216,551 - MPMX19_02957 0.48 -1.6
216,551 - MPMX19_02957 0.48 -0.9
216,551 - MPMX19_02957 0.48 -0.2
216,551 - MPMX19_02957 0.48 -2.0
216,551 - MPMX19_02957 0.48 -2.1
216,551 - MPMX19_02957 0.48 +1.3
216,551 - MPMX19_02957 0.48 +0.7
216,551 - MPMX19_02957 0.48 -1.8
216,898 + MPMX19_02957 0.85 -0.6
216,899 - MPMX19_02957 0.85 +0.5
216,901 + MPMX19_02957 0.85 -1.1
216,901 + MPMX19_02957 0.85 -1.2
216,901 + MPMX19_02957 0.85 +0.6
216,901 + MPMX19_02957 0.85 +0.3
216,901 + MPMX19_02957 0.85 +0.7
216,901 + MPMX19_02957 0.85 -1.4
216,901 + MPMX19_02957 0.85 +0.5
216,902 - MPMX19_02957 0.85 +0.9
216,902 - MPMX19_02957 0.85 -0.4
216,949 + +0.5
216,950 - +0.4
216,950 - -0.9
216,991 + -0.7
217,033 + -1.8
217,033 + -0.1
217,444 + MPMX19_02958 0.24 -0.5
217,444 + MPMX19_02958 0.24 -0.3
217,444 + MPMX19_02958 0.24 +0.7
217,444 + MPMX19_02958 0.24 -0.7
217,445 - MPMX19_02958 0.24 -0.3
217,621 + MPMX19_02958 0.34 -0.1
217,621 + MPMX19_02958 0.34 -0.9
217,621 + MPMX19_02958 0.34 -0.7
217,621 + MPMX19_02958 0.34 +0.4
217,621 + MPMX19_02958 0.34 +0.2
217,621 + MPMX19_02958 0.34 +0.8
217,621 + MPMX19_02958 0.34 +0.8
217,621 + MPMX19_02958 0.34 -1.2
217,622 - MPMX19_02958 0.34 -0.2
217,622 - MPMX19_02958 0.34 +0.1
217,622 - MPMX19_02958 0.34 -0.5
217,622 - MPMX19_02958 0.34 -0.4
217,622 - MPMX19_02958 0.34 -1.6
217,654 + MPMX19_02958 0.36 -0.5
217,655 - MPMX19_02958 0.36 -0.6
217,655 - MPMX19_02958 0.36 +1.6
217,655 - MPMX19_02958 0.36 -0.8
217,923 + MPMX19_02958 0.53 -0.3
217,923 + MPMX19_02958 0.53 -1.1
217,923 + MPMX19_02958 0.53 +1.2
217,923 + MPMX19_02958 0.53 -0.3
217,923 + MPMX19_02958 0.53 +0.1
217,923 + MPMX19_02958 0.53 -2.7
217,923 + MPMX19_02958 0.53 +0.8
217,924 - MPMX19_02958 0.53 -0.2
217,924 - MPMX19_02958 0.53 -1.9
217,924 - MPMX19_02958 0.53 +0.7
217,924 - MPMX19_02958 0.53 +1.1
217,924 - MPMX19_02958 0.53 +2.8
217,924 - MPMX19_02958 0.53 -0.0
217,975 + MPMX19_02958 0.56 +1.5
217,975 + MPMX19_02958 0.56 -1.5
217,976 - MPMX19_02958 0.56 -0.8
217,976 - MPMX19_02958 0.56 +1.3
217,976 - MPMX19_02958 0.56 +0.1
218,116 + MPMX19_02958 0.65 -0.7
218,117 - MPMX19_02958 0.65 +0.2
218,117 - MPMX19_02958 0.65 -1.3
218,117 - MPMX19_02958 0.65 -0.6
218,305 + MPMX19_02958 0.76 -0.5
218,305 + MPMX19_02958 0.76 -0.6
218,306 - MPMX19_02958 0.76 -0.9
218,306 - MPMX19_02958 0.76 -1.2
218,306 - MPMX19_02958 0.76 +0.1
218,332 + MPMX19_02958 0.78 -0.5
218,332 + MPMX19_02958 0.78 -1.4
218,333 - MPMX19_02958 0.78 +0.1
218,374 + MPMX19_02958 0.80 -0.7
218,374 + MPMX19_02958 0.80 -0.2
218,375 - MPMX19_02958 0.80 -0.7
218,614 + -1.7
218,615 - -0.6
218,629 + +0.5
218,629 + -0.2
218,629 + -1.7
218,871 - MPMX19_02959 0.17 -2.4
219,005 + MPMX19_02959 0.31 -0.4
219,005 + MPMX19_02959 0.31 +1.9
219,005 + MPMX19_02959 0.31 -0.5
219,005 + MPMX19_02959 0.31 -0.4
219,005 + MPMX19_02959 0.31 +0.1
219,005 + MPMX19_02959 0.31 -0.9
219,005 + MPMX19_02959 0.31 +0.3
219,005 + MPMX19_02959 0.31 -0.9
219,006 - MPMX19_02959 0.31 -1.5
219,006 - MPMX19_02959 0.31 -2.1
219,006 - MPMX19_02959 0.31 -0.6
219,006 - MPMX19_02959 0.31 -0.7
219,006 - MPMX19_02959 0.31 -1.4
219,006 - MPMX19_02959 0.31 -3.9
219,006 - MPMX19_02959 0.31 +0.5
219,006 - MPMX19_02959 0.31 +1.1
219,006 - MPMX19_02959 0.31 +0.5
219,113 + MPMX19_02959 0.42 -0.6
219,113 + MPMX19_02959 0.42 -0.0
219,114 - MPMX19_02959 0.42 -0.4
219,114 - MPMX19_02959 0.42 +0.4
219,176 + MPMX19_02959 0.48 +0.7
219,177 - MPMX19_02959 0.48 -1.4
219,177 - MPMX19_02959 0.48 -0.8
219,335 + MPMX19_02959 0.64 -1.7
219,335 + MPMX19_02959 0.64 -0.7
219,336 - MPMX19_02959 0.64 +0.1
219,336 - MPMX19_02959 0.64 +0.1
219,336 - MPMX19_02959 0.64 -1.4
219,336 - MPMX19_02959 0.64 -0.2
219,494 + MPMX19_02959 0.80 -0.1
219,494 + MPMX19_02959 0.80 -1.2
219,495 - MPMX19_02959 0.80 -0.5
219,495 - MPMX19_02959 0.80 -0.9

Or see this region's nucleotide sequence