Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02950

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02949 and MPMX19_02950 are separated by 9 nucleotidesMPMX19_02950 and MPMX19_02951 are separated by 288 nucleotides MPMX19_02949: MPMX19_02949 - HTH-type transcriptional activator CmpR, at 207,458 to 208,405 _02949 MPMX19_02950: MPMX19_02950 - Deoxyribose operon repressor, at 208,415 to 209,182 _02950 MPMX19_02951: MPMX19_02951 - Deoxyribose-phosphate aldolase 1, at 209,471 to 210,142 _02951 Position (kb) 208 209 210Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 207.423 kb on + strandat 207.424 kb on - strandat 207.424 kb on - strandat 207.429 kb on + strandat 207.430 kb on - strandat 207.430 kb on - strandat 207.430 kb on - strandat 207.433 kb on + strandat 207.433 kb on + strandat 207.433 kb on + strandat 207.434 kb on - strandat 207.434 kb on - strandat 207.434 kb on - strandat 207.434 kb on - strandat 207.715 kb on + strand, within MPMX19_02949at 207.715 kb on + strand, within MPMX19_02949at 207.716 kb on - strand, within MPMX19_02949at 207.716 kb on - strand, within MPMX19_02949at 207.716 kb on - strand, within MPMX19_02949at 207.716 kb on - strand, within MPMX19_02949at 207.716 kb on - strand, within MPMX19_02949at 207.736 kb on + strand, within MPMX19_02949at 207.779 kb on + strand, within MPMX19_02949at 207.779 kb on + strand, within MPMX19_02949at 207.779 kb on + strand, within MPMX19_02949at 207.779 kb on + strand, within MPMX19_02949at 207.779 kb on + strand, within MPMX19_02949at 207.779 kb on + strand, within MPMX19_02949at 207.779 kb on + strand, within MPMX19_02949at 207.780 kb on - strand, within MPMX19_02949at 207.780 kb on - strand, within MPMX19_02949at 207.780 kb on - strand, within MPMX19_02949at 207.780 kb on - strand, within MPMX19_02949at 207.780 kb on - strand, within MPMX19_02949at 207.780 kb on - strand, within MPMX19_02949at 207.780 kb on - strand, within MPMX19_02949at 208.088 kb on + strand, within MPMX19_02949at 208.088 kb on + strand, within MPMX19_02949at 208.088 kb on + strand, within MPMX19_02949at 208.089 kb on - strand, within MPMX19_02949at 208.089 kb on - strand, within MPMX19_02949at 208.089 kb on - strand, within MPMX19_02949at 208.089 kb on - strand, within MPMX19_02949at 208.089 kb on - strand, within MPMX19_02949at 208.274 kb on + strand, within MPMX19_02949at 208.274 kb on + strand, within MPMX19_02949at 208.275 kb on - strand, within MPMX19_02949at 208.275 kb on - strand, within MPMX19_02949at 208.275 kb on - strand, within MPMX19_02949at 208.275 kb on - strand, within MPMX19_02949at 208.275 kb on - strand, within MPMX19_02949at 208.332 kb on - strandat 208.332 kb on - strandat 208.743 kb on + strand, within MPMX19_02950at 208.744 kb on - strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.981 kb on - strand, within MPMX19_02950at 208.981 kb on - strand, within MPMX19_02950at 208.981 kb on - strand, within MPMX19_02950at 209.019 kb on + strand, within MPMX19_02950at 209.019 kb on + strand, within MPMX19_02950at 209.019 kb on + strand, within MPMX19_02950at 209.020 kb on - strand, within MPMX19_02950at 209.020 kb on - strand, within MPMX19_02950at 209.020 kb on - strand, within MPMX19_02950at 209.032 kb on - strand, within MPMX19_02950at 209.122 kb on - strandat 209.122 kb on - strandat 209.527 kb on + strandat 209.527 kb on + strandat 209.527 kb on + strandat 209.527 kb on + strandat 209.528 kb on - strandat 209.805 kb on + strand, within MPMX19_02951at 209.805 kb on + strand, within MPMX19_02951at 209.806 kb on + strand, within MPMX19_02951at 209.806 kb on - strand, within MPMX19_02951at 209.806 kb on - strand, within MPMX19_02951at 210.163 kb on + strandat 210.163 kb on + strandat 210.163 kb on + strandat 210.163 kb on + strandat 210.163 kb on + strandat 210.163 kb on + strandat 210.163 kb on + strandat 210.164 kb on - strandat 210.164 kb on - strandat 210.168 kb on + strandat 210.168 kb on + strandat 210.168 kb on + strandat 210.168 kb on + strandat 210.169 kb on - strandat 210.169 kb on - strandat 210.169 kb on - strandat 210.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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207,423 + -1.6
207,424 - +1.4
207,424 - -1.1
207,429 + +1.7
207,430 - -0.9
207,430 - -0.1
207,430 - -1.6
207,433 + -0.2
207,433 + -0.2
207,433 + -1.5
207,434 - +0.7
207,434 - -1.3
207,434 - -1.3
207,434 - +0.2
207,715 + MPMX19_02949 0.27 -0.0
207,715 + MPMX19_02949 0.27 -0.3
207,716 - MPMX19_02949 0.27 -2.2
207,716 - MPMX19_02949 0.27 -1.5
207,716 - MPMX19_02949 0.27 -1.5
207,716 - MPMX19_02949 0.27 +0.3
207,716 - MPMX19_02949 0.27 -0.3
207,736 + MPMX19_02949 0.29 +0.2
207,779 + MPMX19_02949 0.34 -2.2
207,779 + MPMX19_02949 0.34 -0.5
207,779 + MPMX19_02949 0.34 +0.7
207,779 + MPMX19_02949 0.34 -0.2
207,779 + MPMX19_02949 0.34 +1.3
207,779 + MPMX19_02949 0.34 -1.1
207,779 + MPMX19_02949 0.34 -0.2
207,780 - MPMX19_02949 0.34 +1.1
207,780 - MPMX19_02949 0.34 -0.5
207,780 - MPMX19_02949 0.34 -0.6
207,780 - MPMX19_02949 0.34 -0.2
207,780 - MPMX19_02949 0.34 -0.5
207,780 - MPMX19_02949 0.34 -1.0
207,780 - MPMX19_02949 0.34 -0.9
208,088 + MPMX19_02949 0.66 -0.8
208,088 + MPMX19_02949 0.66 -0.5
208,088 + MPMX19_02949 0.66 -1.5
208,089 - MPMX19_02949 0.67 +0.7
208,089 - MPMX19_02949 0.67 +0.9
208,089 - MPMX19_02949 0.67 -2.9
208,089 - MPMX19_02949 0.67 -0.9
208,089 - MPMX19_02949 0.67 -0.1
208,274 + MPMX19_02949 0.86 +0.1
208,274 + MPMX19_02949 0.86 +1.0
208,275 - MPMX19_02949 0.86 -0.3
208,275 - MPMX19_02949 0.86 -1.1
208,275 - MPMX19_02949 0.86 +0.4
208,275 - MPMX19_02949 0.86 -0.5
208,275 - MPMX19_02949 0.86 -0.2
208,332 - -0.7
208,332 - -0.6
208,743 + MPMX19_02950 0.43 +0.1
208,744 - MPMX19_02950 0.43 -2.4
208,980 + MPMX19_02950 0.74 -1.9
208,980 + MPMX19_02950 0.74 +0.3
208,980 + MPMX19_02950 0.74 +0.3
208,980 + MPMX19_02950 0.74 -0.6
208,980 + MPMX19_02950 0.74 -0.4
208,980 + MPMX19_02950 0.74 +0.5
208,980 + MPMX19_02950 0.74 -1.7
208,980 + MPMX19_02950 0.74 -0.1
208,980 + MPMX19_02950 0.74 +0.7
208,981 - MPMX19_02950 0.74 +1.1
208,981 - MPMX19_02950 0.74 -1.2
208,981 - MPMX19_02950 0.74 -1.2
209,019 + MPMX19_02950 0.79 -0.7
209,019 + MPMX19_02950 0.79 -1.6
209,019 + MPMX19_02950 0.79 -1.6
209,020 - MPMX19_02950 0.79 +2.1
209,020 - MPMX19_02950 0.79 +0.1
209,020 - MPMX19_02950 0.79 -0.6
209,032 - MPMX19_02950 0.80 +0.1
209,122 - +3.1
209,122 - +0.4
209,527 + -1.0
209,527 + -0.2
209,527 + -1.4
209,527 + +0.3
209,528 - +1.5
209,805 + MPMX19_02951 0.50 -2.2
209,805 + MPMX19_02951 0.50 -2.6
209,806 + MPMX19_02951 0.50 -0.2
209,806 - MPMX19_02951 0.50 +1.1
209,806 - MPMX19_02951 0.50 -1.0
210,163 + -1.6
210,163 + -0.8
210,163 + +1.4
210,163 + +0.1
210,163 + -0.3
210,163 + -0.9
210,163 + +1.1
210,164 - -0.5
210,164 - -2.4
210,168 + -0.3
210,168 + -0.1
210,168 + -0.1
210,168 + +0.1
210,169 - -2.4
210,169 - -0.3
210,169 - -1.3
210,169 - -0.1

Or see this region's nucleotide sequence