Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02949

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02948 and MPMX19_02949 are separated by 123 nucleotidesMPMX19_02949 and MPMX19_02950 are separated by 9 nucleotides MPMX19_02948: MPMX19_02948 - Ribulose bisphosphate carboxylase large chain, at 205,838 to 207,334 _02948 MPMX19_02949: MPMX19_02949 - HTH-type transcriptional activator CmpR, at 207,458 to 208,405 _02949 MPMX19_02950: MPMX19_02950 - Deoxyribose operon repressor, at 208,415 to 209,182 _02950 Position (kb) 207 208 209Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 206.474 kb on - strand, within MPMX19_02948at 206.475 kb on + strand, within MPMX19_02948at 206.494 kb on - strand, within MPMX19_02948at 206.541 kb on + strand, within MPMX19_02948at 206.541 kb on + strand, within MPMX19_02948at 206.541 kb on + strand, within MPMX19_02948at 206.541 kb on + strand, within MPMX19_02948at 206.541 kb on + strand, within MPMX19_02948at 206.541 kb on + strand, within MPMX19_02948at 206.541 kb on + strand, within MPMX19_02948at 206.541 kb on + strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.577 kb on + strand, within MPMX19_02948at 206.577 kb on + strand, within MPMX19_02948at 206.577 kb on + strand, within MPMX19_02948at 206.577 kb on + strand, within MPMX19_02948at 206.577 kb on + strand, within MPMX19_02948at 206.577 kb on + strand, within MPMX19_02948at 206.577 kb on + strand, within MPMX19_02948at 206.578 kb on - strand, within MPMX19_02948at 206.578 kb on - strand, within MPMX19_02948at 206.578 kb on - strand, within MPMX19_02948at 206.578 kb on - strand, within MPMX19_02948at 206.578 kb on - strand, within MPMX19_02948at 206.581 kb on + strand, within MPMX19_02948at 206.582 kb on - strand, within MPMX19_02948at 206.582 kb on - strand, within MPMX19_02948at 206.582 kb on - strand, within MPMX19_02948at 206.634 kb on + strand, within MPMX19_02948at 206.635 kb on - strand, within MPMX19_02948at 206.635 kb on - strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.725 kb on - strand, within MPMX19_02948at 206.725 kb on - strand, within MPMX19_02948at 206.725 kb on - strand, within MPMX19_02948at 206.725 kb on - strand, within MPMX19_02948at 206.725 kb on - strand, within MPMX19_02948at 206.739 kb on + strand, within MPMX19_02948at 206.739 kb on + strand, within MPMX19_02948at 206.739 kb on + strand, within MPMX19_02948at 206.740 kb on - strand, within MPMX19_02948at 206.740 kb on - strand, within MPMX19_02948at 206.740 kb on - strand, within MPMX19_02948at 206.862 kb on + strand, within MPMX19_02948at 206.863 kb on - strand, within MPMX19_02948at 206.881 kb on + strand, within MPMX19_02948at 206.985 kb on + strand, within MPMX19_02948at 206.985 kb on - strand, within MPMX19_02948at 206.994 kb on + strand, within MPMX19_02948at 206.994 kb on + strand, within MPMX19_02948at 206.994 kb on + strand, within MPMX19_02948at 206.995 kb on - strand, within MPMX19_02948at 206.995 kb on - strand, within MPMX19_02948at 207.003 kb on + strand, within MPMX19_02948at 207.003 kb on + strand, within MPMX19_02948at 207.003 kb on + strand, within MPMX19_02948at 207.003 kb on + strand, within MPMX19_02948at 207.004 kb on - strand, within MPMX19_02948at 207.004 kb on - strand, within MPMX19_02948at 207.004 kb on - strand, within MPMX19_02948at 207.004 kb on - strand, within MPMX19_02948at 207.187 kb on + strandat 207.187 kb on + strandat 207.188 kb on - strandat 207.207 kb on + strandat 207.207 kb on + strandat 207.207 kb on + strandat 207.207 kb on + strandat 207.207 kb on + strandat 207.207 kb on + strandat 207.208 kb on - strandat 207.208 kb on - strandat 207.208 kb on - strandat 207.208 kb on - strandat 207.208 kb on - strandat 207.222 kb on + strandat 207.323 kb on + strandat 207.323 kb on + strandat 207.324 kb on - strandat 207.324 kb on - strandat 207.324 kb on - strandat 207.324 kb on - strandat 207.327 kb on + strandat 207.327 kb on + strandat 207.327 kb on + strandat 207.328 kb on - strandat 207.328 kb on - strandat 207.328 kb on - strandat 207.328 kb on - strandat 207.328 kb on - strandat 207.328 kb on - strandat 207.423 kb on + strandat 207.424 kb on - strandat 207.424 kb on - strandat 207.429 kb on + strandat 207.430 kb on - strandat 207.430 kb on - strandat 207.430 kb on - strandat 207.433 kb on + strandat 207.433 kb on + strandat 207.433 kb on + strandat 207.434 kb on - strandat 207.434 kb on - strandat 207.434 kb on - strandat 207.434 kb on - strandat 207.715 kb on + strand, within MPMX19_02949at 207.715 kb on + strand, within MPMX19_02949at 207.716 kb on - strand, within MPMX19_02949at 207.716 kb on - strand, within MPMX19_02949at 207.716 kb on - strand, within MPMX19_02949at 207.716 kb on - strand, within MPMX19_02949at 207.716 kb on - strand, within MPMX19_02949at 207.736 kb on + strand, within MPMX19_02949at 207.779 kb on + strand, within MPMX19_02949at 207.779 kb on + strand, within MPMX19_02949at 207.779 kb on + strand, within MPMX19_02949at 207.779 kb on + strand, within MPMX19_02949at 207.779 kb on + strand, within MPMX19_02949at 207.779 kb on + strand, within MPMX19_02949at 207.779 kb on + strand, within MPMX19_02949at 207.780 kb on - strand, within MPMX19_02949at 207.780 kb on - strand, within MPMX19_02949at 207.780 kb on - strand, within MPMX19_02949at 207.780 kb on - strand, within MPMX19_02949at 207.780 kb on - strand, within MPMX19_02949at 207.780 kb on - strand, within MPMX19_02949at 207.780 kb on - strand, within MPMX19_02949at 208.088 kb on + strand, within MPMX19_02949at 208.088 kb on + strand, within MPMX19_02949at 208.088 kb on + strand, within MPMX19_02949at 208.089 kb on - strand, within MPMX19_02949at 208.089 kb on - strand, within MPMX19_02949at 208.089 kb on - strand, within MPMX19_02949at 208.089 kb on - strand, within MPMX19_02949at 208.089 kb on - strand, within MPMX19_02949at 208.274 kb on + strand, within MPMX19_02949at 208.274 kb on + strand, within MPMX19_02949at 208.275 kb on - strand, within MPMX19_02949at 208.275 kb on - strand, within MPMX19_02949at 208.275 kb on - strand, within MPMX19_02949at 208.275 kb on - strand, within MPMX19_02949at 208.275 kb on - strand, within MPMX19_02949at 208.332 kb on - strandat 208.332 kb on - strandat 208.743 kb on + strand, within MPMX19_02950at 208.744 kb on - strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.981 kb on - strand, within MPMX19_02950at 208.981 kb on - strand, within MPMX19_02950at 208.981 kb on - strand, within MPMX19_02950at 209.019 kb on + strand, within MPMX19_02950at 209.019 kb on + strand, within MPMX19_02950at 209.019 kb on + strand, within MPMX19_02950at 209.020 kb on - strand, within MPMX19_02950at 209.020 kb on - strand, within MPMX19_02950at 209.020 kb on - strand, within MPMX19_02950at 209.032 kb on - strand, within MPMX19_02950at 209.122 kb on - strandat 209.122 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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206,474 - MPMX19_02948 0.42 -0.5
206,475 + MPMX19_02948 0.43 -0.2
206,494 - MPMX19_02948 0.44 +0.3
206,541 + MPMX19_02948 0.47 -0.0
206,541 + MPMX19_02948 0.47 -0.6
206,541 + MPMX19_02948 0.47 -2.0
206,541 + MPMX19_02948 0.47 +0.8
206,541 + MPMX19_02948 0.47 -1.3
206,541 + MPMX19_02948 0.47 -0.3
206,541 + MPMX19_02948 0.47 -0.9
206,541 + MPMX19_02948 0.47 -1.9
206,542 - MPMX19_02948 0.47 +0.1
206,542 - MPMX19_02948 0.47 +0.0
206,542 - MPMX19_02948 0.47 +0.7
206,542 - MPMX19_02948 0.47 -0.6
206,542 - MPMX19_02948 0.47 -0.3
206,542 - MPMX19_02948 0.47 +0.1
206,542 - MPMX19_02948 0.47 -0.9
206,542 - MPMX19_02948 0.47 +0.9
206,542 - MPMX19_02948 0.47 -1.5
206,542 - MPMX19_02948 0.47 -1.2
206,577 + MPMX19_02948 0.49 -1.3
206,577 + MPMX19_02948 0.49 -1.3
206,577 + MPMX19_02948 0.49 -1.6
206,577 + MPMX19_02948 0.49 -0.2
206,577 + MPMX19_02948 0.49 -0.5
206,577 + MPMX19_02948 0.49 +0.8
206,577 + MPMX19_02948 0.49 -2.1
206,578 - MPMX19_02948 0.49 -2.7
206,578 - MPMX19_02948 0.49 +0.3
206,578 - MPMX19_02948 0.49 -1.2
206,578 - MPMX19_02948 0.49 -0.1
206,578 - MPMX19_02948 0.49 -0.6
206,581 + MPMX19_02948 0.50 -0.2
206,582 - MPMX19_02948 0.50 +1.0
206,582 - MPMX19_02948 0.50 +0.2
206,582 - MPMX19_02948 0.50 -1.6
206,634 + MPMX19_02948 0.53 +0.8
206,635 - MPMX19_02948 0.53 +0.4
206,635 - MPMX19_02948 0.53 +0.5
206,724 + MPMX19_02948 0.59 +0.2
206,724 + MPMX19_02948 0.59 -0.8
206,724 + MPMX19_02948 0.59 -0.6
206,724 + MPMX19_02948 0.59 -0.7
206,724 + MPMX19_02948 0.59 +0.2
206,724 + MPMX19_02948 0.59 -0.7
206,724 + MPMX19_02948 0.59 -0.9
206,724 + MPMX19_02948 0.59 +0.5
206,724 + MPMX19_02948 0.59 -2.0
206,724 + MPMX19_02948 0.59 -0.2
206,725 - MPMX19_02948 0.59 +0.1
206,725 - MPMX19_02948 0.59 -0.2
206,725 - MPMX19_02948 0.59 -0.9
206,725 - MPMX19_02948 0.59 +0.3
206,725 - MPMX19_02948 0.59 -0.5
206,739 + MPMX19_02948 0.60 +0.6
206,739 + MPMX19_02948 0.60 -0.3
206,739 + MPMX19_02948 0.60 -0.8
206,740 - MPMX19_02948 0.60 -0.7
206,740 - MPMX19_02948 0.60 -0.7
206,740 - MPMX19_02948 0.60 +0.5
206,862 + MPMX19_02948 0.68 -0.3
206,863 - MPMX19_02948 0.68 -1.9
206,881 + MPMX19_02948 0.70 +0.7
206,985 + MPMX19_02948 0.77 +0.1
206,985 - MPMX19_02948 0.77 -1.0
206,994 + MPMX19_02948 0.77 -0.6
206,994 + MPMX19_02948 0.77 +1.1
206,994 + MPMX19_02948 0.77 -1.2
206,995 - MPMX19_02948 0.77 +0.1
206,995 - MPMX19_02948 0.77 -1.3
207,003 + MPMX19_02948 0.78 +0.1
207,003 + MPMX19_02948 0.78 -0.1
207,003 + MPMX19_02948 0.78 -0.2
207,003 + MPMX19_02948 0.78 -0.1
207,004 - MPMX19_02948 0.78 -1.3
207,004 - MPMX19_02948 0.78 -0.1
207,004 - MPMX19_02948 0.78 -1.7
207,004 - MPMX19_02948 0.78 +0.5
207,187 + +0.0
207,187 + -1.6
207,188 - -1.2
207,207 + -0.5
207,207 + +1.1
207,207 + +0.5
207,207 + -2.0
207,207 + -1.0
207,207 + -0.5
207,208 - -0.7
207,208 - +1.1
207,208 - -0.8
207,208 - -0.6
207,208 - +0.1
207,222 + -2.1
207,323 + +0.3
207,323 + +0.4
207,324 - -0.0
207,324 - -0.7
207,324 - -0.6
207,324 - -1.6
207,327 + -1.1
207,327 + +0.5
207,327 + +0.2
207,328 - -0.7
207,328 - -0.4
207,328 - -0.4
207,328 - -1.7
207,328 - -0.3
207,328 - -0.3
207,423 + -1.6
207,424 - +1.4
207,424 - -1.1
207,429 + +1.7
207,430 - -0.9
207,430 - -0.1
207,430 - -1.6
207,433 + -0.2
207,433 + -0.2
207,433 + -1.5
207,434 - +0.7
207,434 - -1.3
207,434 - -1.3
207,434 - +0.2
207,715 + MPMX19_02949 0.27 -0.0
207,715 + MPMX19_02949 0.27 -0.3
207,716 - MPMX19_02949 0.27 -2.2
207,716 - MPMX19_02949 0.27 -1.5
207,716 - MPMX19_02949 0.27 -1.5
207,716 - MPMX19_02949 0.27 +0.3
207,716 - MPMX19_02949 0.27 -0.3
207,736 + MPMX19_02949 0.29 +0.2
207,779 + MPMX19_02949 0.34 -2.2
207,779 + MPMX19_02949 0.34 -0.5
207,779 + MPMX19_02949 0.34 +0.7
207,779 + MPMX19_02949 0.34 -0.2
207,779 + MPMX19_02949 0.34 +1.3
207,779 + MPMX19_02949 0.34 -1.1
207,779 + MPMX19_02949 0.34 -0.2
207,780 - MPMX19_02949 0.34 +1.1
207,780 - MPMX19_02949 0.34 -0.5
207,780 - MPMX19_02949 0.34 -0.6
207,780 - MPMX19_02949 0.34 -0.2
207,780 - MPMX19_02949 0.34 -0.5
207,780 - MPMX19_02949 0.34 -1.0
207,780 - MPMX19_02949 0.34 -0.9
208,088 + MPMX19_02949 0.66 -0.8
208,088 + MPMX19_02949 0.66 -0.5
208,088 + MPMX19_02949 0.66 -1.5
208,089 - MPMX19_02949 0.67 +0.7
208,089 - MPMX19_02949 0.67 +0.9
208,089 - MPMX19_02949 0.67 -2.9
208,089 - MPMX19_02949 0.67 -0.9
208,089 - MPMX19_02949 0.67 -0.1
208,274 + MPMX19_02949 0.86 +0.1
208,274 + MPMX19_02949 0.86 +1.0
208,275 - MPMX19_02949 0.86 -0.3
208,275 - MPMX19_02949 0.86 -1.1
208,275 - MPMX19_02949 0.86 +0.4
208,275 - MPMX19_02949 0.86 -0.5
208,275 - MPMX19_02949 0.86 -0.2
208,332 - -0.7
208,332 - -0.6
208,743 + MPMX19_02950 0.43 +0.1
208,744 - MPMX19_02950 0.43 -2.4
208,980 + MPMX19_02950 0.74 -1.9
208,980 + MPMX19_02950 0.74 +0.3
208,980 + MPMX19_02950 0.74 +0.3
208,980 + MPMX19_02950 0.74 -0.6
208,980 + MPMX19_02950 0.74 -0.4
208,980 + MPMX19_02950 0.74 +0.5
208,980 + MPMX19_02950 0.74 -1.7
208,980 + MPMX19_02950 0.74 -0.1
208,980 + MPMX19_02950 0.74 +0.7
208,981 - MPMX19_02950 0.74 +1.1
208,981 - MPMX19_02950 0.74 -1.2
208,981 - MPMX19_02950 0.74 -1.2
209,019 + MPMX19_02950 0.79 -0.7
209,019 + MPMX19_02950 0.79 -1.6
209,019 + MPMX19_02950 0.79 -1.6
209,020 - MPMX19_02950 0.79 +2.1
209,020 - MPMX19_02950 0.79 +0.1
209,020 - MPMX19_02950 0.79 -0.6
209,032 - MPMX19_02950 0.80 +0.1
209,122 - +3.1
209,122 - +0.4

Or see this region's nucleotide sequence