Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02947

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02945 and MPMX19_02946 overlap by 4 nucleotidesMPMX19_02946 and MPMX19_02947 overlap by 11 nucleotidesMPMX19_02947 and MPMX19_02948 are separated by 13 nucleotides MPMX19_02945: MPMX19_02945 - Protein CbbX, at 203,755 to 204,675 _02945 MPMX19_02946: MPMX19_02946 - Ribulose-phosphate 3-epimerase, at 204,672 to 205,394 _02946 MPMX19_02947: MPMX19_02947 - Ribulose bisphosphate carboxylase small chain, chromosomal, at 205,384 to 205,824 _02947 MPMX19_02948: MPMX19_02948 - Ribulose bisphosphate carboxylase large chain, at 205,838 to 207,334 _02948 Position (kb) 205 206Strain fitness (log2 ratio) -2 -1 0 1 2at 204.593 kb on + strandat 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.369 kb on + strandat 205.369 kb on + strandat 205.369 kb on + strandat 205.370 kb on - strandat 205.370 kb on - strandat 205.412 kb on + strandat 205.442 kb on + strand, within MPMX19_02947at 205.442 kb on + strand, within MPMX19_02947at 205.443 kb on - strand, within MPMX19_02947at 205.443 kb on - strand, within MPMX19_02947at 205.443 kb on - strand, within MPMX19_02947at 205.443 kb on - strand, within MPMX19_02947at 205.443 kb on - strand, within MPMX19_02947at 205.457 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.590 kb on - strand, within MPMX19_02947at 205.590 kb on - strand, within MPMX19_02947at 205.590 kb on - strand, within MPMX19_02947at 205.590 kb on - strand, within MPMX19_02947at 205.685 kb on + strand, within MPMX19_02947at 205.685 kb on + strand, within MPMX19_02947at 205.685 kb on + strand, within MPMX19_02947at 205.685 kb on + strand, within MPMX19_02947at 205.685 kb on + strand, within MPMX19_02947at 205.685 kb on + strand, within MPMX19_02947at 205.685 kb on + strand, within MPMX19_02947at 205.685 kb on + strand, within MPMX19_02947at 205.685 kb on + strand, within MPMX19_02947at 205.686 kb on - strand, within MPMX19_02947at 205.686 kb on - strand, within MPMX19_02947at 205.686 kb on - strand, within MPMX19_02947at 205.686 kb on - strand, within MPMX19_02947at 205.686 kb on - strand, within MPMX19_02947at 205.686 kb on - strand, within MPMX19_02947at 205.751 kb on + strand, within MPMX19_02947at 205.751 kb on + strand, within MPMX19_02947at 205.751 kb on + strand, within MPMX19_02947at 205.751 kb on + strand, within MPMX19_02947at 205.751 kb on + strand, within MPMX19_02947at 205.752 kb on - strand, within MPMX19_02947at 205.752 kb on - strand, within MPMX19_02947at 205.752 kb on - strand, within MPMX19_02947at 205.752 kb on - strand, within MPMX19_02947at 205.839 kb on + strandat 205.839 kb on + strandat 205.839 kb on + strandat 205.839 kb on + strandat 205.840 kb on - strandat 205.840 kb on - strandat 205.840 kb on - strandat 205.840 kb on - strandat 205.840 kb on - strandat 205.840 kb on - strandat 205.840 kb on - strandat 205.840 kb on - strandat 205.866 kb on + strandat 205.866 kb on + strandat 205.866 kb on + strandat 205.866 kb on + strandat 205.867 kb on - strandat 205.867 kb on - strandat 205.867 kb on - strandat 205.891 kb on - strandat 205.891 kb on - strandat 206.118 kb on + strand, within MPMX19_02948at 206.118 kb on + strand, within MPMX19_02948at 206.118 kb on + strand, within MPMX19_02948at 206.119 kb on - strand, within MPMX19_02948at 206.119 kb on - strand, within MPMX19_02948at 206.119 kb on - strand, within MPMX19_02948at 206.119 kb on - strand, within MPMX19_02948at 206.259 kb on + strand, within MPMX19_02948at 206.259 kb on + strand, within MPMX19_02948at 206.259 kb on + strand, within MPMX19_02948at 206.259 kb on + strand, within MPMX19_02948at 206.259 kb on + strand, within MPMX19_02948at 206.259 kb on + strand, within MPMX19_02948at 206.259 kb on + strand, within MPMX19_02948at 206.259 kb on + strand, within MPMX19_02948at 206.259 kb on + strand, within MPMX19_02948at 206.260 kb on - strand, within MPMX19_02948at 206.260 kb on - strand, within MPMX19_02948at 206.260 kb on - strand, within MPMX19_02948at 206.260 kb on - strand, within MPMX19_02948at 206.260 kb on - strand, within MPMX19_02948at 206.260 kb on - strand, within MPMX19_02948at 206.260 kb on - strand, within MPMX19_02948at 206.260 kb on - strand, within MPMX19_02948at 206.394 kb on + strand, within MPMX19_02948at 206.394 kb on + strand, within MPMX19_02948at 206.394 kb on + strand, within MPMX19_02948at 206.394 kb on + strand, within MPMX19_02948at 206.394 kb on + strand, within MPMX19_02948at 206.394 kb on + strand, within MPMX19_02948at 206.394 kb on + strand, within MPMX19_02948at 206.394 kb on + strand, within MPMX19_02948at 206.394 kb on + strand, within MPMX19_02948at 206.395 kb on - strand, within MPMX19_02948at 206.395 kb on - strand, within MPMX19_02948at 206.395 kb on - strand, within MPMX19_02948at 206.395 kb on - strand, within MPMX19_02948at 206.395 kb on - strand, within MPMX19_02948at 206.474 kb on - strand, within MPMX19_02948at 206.475 kb on + strand, within MPMX19_02948at 206.494 kb on - strand, within MPMX19_02948at 206.541 kb on + strand, within MPMX19_02948at 206.541 kb on + strand, within MPMX19_02948at 206.541 kb on + strand, within MPMX19_02948at 206.541 kb on + strand, within MPMX19_02948at 206.541 kb on + strand, within MPMX19_02948at 206.541 kb on + strand, within MPMX19_02948at 206.541 kb on + strand, within MPMX19_02948at 206.541 kb on + strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.542 kb on - strand, within MPMX19_02948at 206.577 kb on + strand, within MPMX19_02948at 206.577 kb on + strand, within MPMX19_02948at 206.577 kb on + strand, within MPMX19_02948at 206.577 kb on + strand, within MPMX19_02948at 206.577 kb on + strand, within MPMX19_02948at 206.577 kb on + strand, within MPMX19_02948at 206.577 kb on + strand, within MPMX19_02948at 206.578 kb on - strand, within MPMX19_02948at 206.578 kb on - strand, within MPMX19_02948at 206.578 kb on - strand, within MPMX19_02948at 206.578 kb on - strand, within MPMX19_02948at 206.578 kb on - strand, within MPMX19_02948at 206.581 kb on + strand, within MPMX19_02948at 206.582 kb on - strand, within MPMX19_02948at 206.582 kb on - strand, within MPMX19_02948at 206.582 kb on - strand, within MPMX19_02948at 206.634 kb on + strand, within MPMX19_02948at 206.635 kb on - strand, within MPMX19_02948at 206.635 kb on - strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.724 kb on + strand, within MPMX19_02948at 206.725 kb on - strand, within MPMX19_02948at 206.725 kb on - strand, within MPMX19_02948at 206.725 kb on - strand, within MPMX19_02948at 206.725 kb on - strand, within MPMX19_02948at 206.725 kb on - strand, within MPMX19_02948at 206.739 kb on + strand, within MPMX19_02948at 206.739 kb on + strand, within MPMX19_02948at 206.739 kb on + strand, within MPMX19_02948at 206.740 kb on - strand, within MPMX19_02948at 206.740 kb on - strand, within MPMX19_02948at 206.740 kb on - strand, within MPMX19_02948

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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204,593 + -0.1
205,255 + MPMX19_02946 0.81 -0.9
205,255 + MPMX19_02946 0.81 +0.4
205,255 + MPMX19_02946 0.81 -1.3
205,255 + MPMX19_02946 0.81 +0.9
205,255 + MPMX19_02946 0.81 +0.1
205,255 + MPMX19_02946 0.81 -1.2
205,255 + MPMX19_02946 0.81 -1.6
205,255 + MPMX19_02946 0.81 -0.5
205,255 + MPMX19_02946 0.81 +0.5
205,255 + MPMX19_02946 0.81 -0.9
205,255 + MPMX19_02946 0.81 -1.3
205,256 - MPMX19_02946 0.81 -1.5
205,256 - MPMX19_02946 0.81 -0.9
205,256 - MPMX19_02946 0.81 -1.2
205,256 - MPMX19_02946 0.81 -2.0
205,256 - MPMX19_02946 0.81 -0.6
205,256 - MPMX19_02946 0.81 -0.1
205,256 - MPMX19_02946 0.81 -0.8
205,256 - MPMX19_02946 0.81 -1.0
205,256 - MPMX19_02946 0.81 +1.3
205,256 - MPMX19_02946 0.81 +0.1
205,256 - MPMX19_02946 0.81 +0.3
205,256 - MPMX19_02946 0.81 -0.8
205,256 - MPMX19_02946 0.81 -1.1
205,256 - MPMX19_02946 0.81 -1.5
205,256 - MPMX19_02946 0.81 -0.5
205,256 - MPMX19_02946 0.81 -0.9
205,256 - MPMX19_02946 0.81 +2.1
205,256 - MPMX19_02946 0.81 -0.9
205,256 - MPMX19_02946 0.81 -1.5
205,369 + -0.5
205,369 + -1.1
205,369 + -0.7
205,370 - -0.5
205,370 - -0.2
205,412 + -1.0
205,442 + MPMX19_02947 0.13 -0.6
205,442 + MPMX19_02947 0.13 -0.9
205,443 - MPMX19_02947 0.13 -0.9
205,443 - MPMX19_02947 0.13 +0.8
205,443 - MPMX19_02947 0.13 -0.2
205,443 - MPMX19_02947 0.13 +0.5
205,443 - MPMX19_02947 0.13 +1.1
205,457 + MPMX19_02947 0.17 -1.1
205,589 + MPMX19_02947 0.46 -0.5
205,589 + MPMX19_02947 0.46 -2.3
205,589 + MPMX19_02947 0.46 -0.0
205,589 + MPMX19_02947 0.46 -0.4
205,589 + MPMX19_02947 0.46 -0.2
205,589 + MPMX19_02947 0.46 -1.3
205,589 + MPMX19_02947 0.46 -0.5
205,589 + MPMX19_02947 0.46 -1.4
205,590 - MPMX19_02947 0.47 -0.7
205,590 - MPMX19_02947 0.47 -0.7
205,590 - MPMX19_02947 0.47 +0.1
205,590 - MPMX19_02947 0.47 -0.2
205,685 + MPMX19_02947 0.68 -1.5
205,685 + MPMX19_02947 0.68 -1.2
205,685 + MPMX19_02947 0.68 -1.1
205,685 + MPMX19_02947 0.68 +0.7
205,685 + MPMX19_02947 0.68 -1.7
205,685 + MPMX19_02947 0.68 -1.1
205,685 + MPMX19_02947 0.68 -0.7
205,685 + MPMX19_02947 0.68 -1.8
205,685 + MPMX19_02947 0.68 -0.2
205,686 - MPMX19_02947 0.68 -1.5
205,686 - MPMX19_02947 0.68 -1.8
205,686 - MPMX19_02947 0.68 -2.0
205,686 - MPMX19_02947 0.68 -1.1
205,686 - MPMX19_02947 0.68 +0.5
205,686 - MPMX19_02947 0.68 -1.7
205,751 + MPMX19_02947 0.83 +1.1
205,751 + MPMX19_02947 0.83 -1.3
205,751 + MPMX19_02947 0.83 -0.4
205,751 + MPMX19_02947 0.83 +0.5
205,751 + MPMX19_02947 0.83 -0.6
205,752 - MPMX19_02947 0.83 -1.3
205,752 - MPMX19_02947 0.83 +0.4
205,752 - MPMX19_02947 0.83 -0.3
205,752 - MPMX19_02947 0.83 -1.2
205,839 + +0.7
205,839 + +0.5
205,839 + -0.1
205,839 + -0.2
205,840 - -1.0
205,840 - -0.7
205,840 - -0.1
205,840 - -0.5
205,840 - +0.1
205,840 - +0.3
205,840 - +0.0
205,840 - -0.3
205,866 + -0.1
205,866 + -2.1
205,866 + -0.8
205,866 + -0.6
205,867 - +0.5
205,867 - -0.9
205,867 - -0.2
205,891 - -1.4
205,891 - +0.1
206,118 + MPMX19_02948 0.19 -0.5
206,118 + MPMX19_02948 0.19 -1.1
206,118 + MPMX19_02948 0.19 +0.5
206,119 - MPMX19_02948 0.19 -1.5
206,119 - MPMX19_02948 0.19 -1.1
206,119 - MPMX19_02948 0.19 -1.5
206,119 - MPMX19_02948 0.19 -1.1
206,259 + MPMX19_02948 0.28 -0.5
206,259 + MPMX19_02948 0.28 +0.1
206,259 + MPMX19_02948 0.28 -1.3
206,259 + MPMX19_02948 0.28 +1.1
206,259 + MPMX19_02948 0.28 -0.5
206,259 + MPMX19_02948 0.28 +1.5
206,259 + MPMX19_02948 0.28 -1.2
206,259 + MPMX19_02948 0.28 -0.1
206,259 + MPMX19_02948 0.28 -0.4
206,260 - MPMX19_02948 0.28 +0.2
206,260 - MPMX19_02948 0.28 -0.5
206,260 - MPMX19_02948 0.28 -1.5
206,260 - MPMX19_02948 0.28 -0.9
206,260 - MPMX19_02948 0.28 +1.4
206,260 - MPMX19_02948 0.28 -1.1
206,260 - MPMX19_02948 0.28 -0.8
206,260 - MPMX19_02948 0.28 -0.3
206,394 + MPMX19_02948 0.37 -0.4
206,394 + MPMX19_02948 0.37 +0.4
206,394 + MPMX19_02948 0.37 +0.3
206,394 + MPMX19_02948 0.37 +0.1
206,394 + MPMX19_02948 0.37 +0.3
206,394 + MPMX19_02948 0.37 -0.6
206,394 + MPMX19_02948 0.37 -0.7
206,394 + MPMX19_02948 0.37 -0.1
206,394 + MPMX19_02948 0.37 +0.2
206,395 - MPMX19_02948 0.37 +0.2
206,395 - MPMX19_02948 0.37 -0.0
206,395 - MPMX19_02948 0.37 -0.8
206,395 - MPMX19_02948 0.37 -1.1
206,395 - MPMX19_02948 0.37 -0.9
206,474 - MPMX19_02948 0.42 -0.5
206,475 + MPMX19_02948 0.43 -0.2
206,494 - MPMX19_02948 0.44 +0.3
206,541 + MPMX19_02948 0.47 -0.0
206,541 + MPMX19_02948 0.47 -0.6
206,541 + MPMX19_02948 0.47 -2.0
206,541 + MPMX19_02948 0.47 +0.8
206,541 + MPMX19_02948 0.47 -1.3
206,541 + MPMX19_02948 0.47 -0.3
206,541 + MPMX19_02948 0.47 -0.9
206,541 + MPMX19_02948 0.47 -1.9
206,542 - MPMX19_02948 0.47 +0.1
206,542 - MPMX19_02948 0.47 +0.0
206,542 - MPMX19_02948 0.47 +0.7
206,542 - MPMX19_02948 0.47 -0.6
206,542 - MPMX19_02948 0.47 -0.3
206,542 - MPMX19_02948 0.47 +0.1
206,542 - MPMX19_02948 0.47 -0.9
206,542 - MPMX19_02948 0.47 +0.9
206,542 - MPMX19_02948 0.47 -1.5
206,542 - MPMX19_02948 0.47 -1.2
206,577 + MPMX19_02948 0.49 -1.3
206,577 + MPMX19_02948 0.49 -1.3
206,577 + MPMX19_02948 0.49 -1.6
206,577 + MPMX19_02948 0.49 -0.2
206,577 + MPMX19_02948 0.49 -0.5
206,577 + MPMX19_02948 0.49 +0.8
206,577 + MPMX19_02948 0.49 -2.1
206,578 - MPMX19_02948 0.49 -2.7
206,578 - MPMX19_02948 0.49 +0.3
206,578 - MPMX19_02948 0.49 -1.2
206,578 - MPMX19_02948 0.49 -0.1
206,578 - MPMX19_02948 0.49 -0.6
206,581 + MPMX19_02948 0.50 -0.2
206,582 - MPMX19_02948 0.50 +1.0
206,582 - MPMX19_02948 0.50 +0.2
206,582 - MPMX19_02948 0.50 -1.6
206,634 + MPMX19_02948 0.53 +0.8
206,635 - MPMX19_02948 0.53 +0.4
206,635 - MPMX19_02948 0.53 +0.5
206,724 + MPMX19_02948 0.59 +0.2
206,724 + MPMX19_02948 0.59 -0.8
206,724 + MPMX19_02948 0.59 -0.6
206,724 + MPMX19_02948 0.59 -0.7
206,724 + MPMX19_02948 0.59 +0.2
206,724 + MPMX19_02948 0.59 -0.7
206,724 + MPMX19_02948 0.59 -0.9
206,724 + MPMX19_02948 0.59 +0.5
206,724 + MPMX19_02948 0.59 -2.0
206,724 + MPMX19_02948 0.59 -0.2
206,725 - MPMX19_02948 0.59 +0.1
206,725 - MPMX19_02948 0.59 -0.2
206,725 - MPMX19_02948 0.59 -0.9
206,725 - MPMX19_02948 0.59 +0.3
206,725 - MPMX19_02948 0.59 -0.5
206,739 + MPMX19_02948 0.60 +0.6
206,739 + MPMX19_02948 0.60 -0.3
206,739 + MPMX19_02948 0.60 -0.8
206,740 - MPMX19_02948 0.60 -0.7
206,740 - MPMX19_02948 0.60 -0.7
206,740 - MPMX19_02948 0.60 +0.5

Or see this region's nucleotide sequence