Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02941

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02940 and MPMX19_02941 are separated by 335 nucleotidesMPMX19_02941 and MPMX19_02942 are separated by 16 nucleotides MPMX19_02940: MPMX19_02940 - hypothetical protein, at 196,356 to 198,143 _02940 MPMX19_02941: MPMX19_02941 - Fructose-bisphosphate aldolase, at 198,479 to 199,570 _02941 MPMX19_02942: MPMX19_02942 - Transketolase 1, at 199,587 to 201,665 _02942 Position (kb) 198 199 200Strain fitness (log2 ratio) -2 -1 0 1 2at 197.521 kb on + strand, within MPMX19_02940at 197.521 kb on + strand, within MPMX19_02940at 197.521 kb on + strand, within MPMX19_02940at 197.522 kb on - strand, within MPMX19_02940at 197.522 kb on - strand, within MPMX19_02940at 197.522 kb on - strand, within MPMX19_02940at 197.540 kb on - strand, within MPMX19_02940at 197.540 kb on - strand, within MPMX19_02940at 197.540 kb on - strand, within MPMX19_02940at 197.540 kb on - strand, within MPMX19_02940at 197.540 kb on - strand, within MPMX19_02940at 197.557 kb on + strand, within MPMX19_02940at 197.557 kb on + strand, within MPMX19_02940at 197.558 kb on - strand, within MPMX19_02940at 197.558 kb on - strand, within MPMX19_02940at 197.558 kb on - strand, within MPMX19_02940at 197.842 kb on + strand, within MPMX19_02940at 197.842 kb on + strand, within MPMX19_02940at 197.843 kb on - strand, within MPMX19_02940at 197.843 kb on - strand, within MPMX19_02940at 197.843 kb on - strand, within MPMX19_02940at 197.843 kb on - strand, within MPMX19_02940at 197.843 kb on - strand, within MPMX19_02940at 197.843 kb on - strand, within MPMX19_02940at 197.929 kb on + strand, within MPMX19_02940at 198.003 kb on + strandat 198.004 kb on - strandat 198.309 kb on + strandat 198.309 kb on + strandat 198.309 kb on + strandat 198.309 kb on + strandat 198.309 kb on + strandat 198.309 kb on + strandat 198.309 kb on + strandat 198.309 kb on + strandat 198.309 kb on + strandat 198.309 kb on + strandat 198.310 kb on - strandat 198.310 kb on - strandat 198.310 kb on - strandat 198.310 kb on - strandat 198.310 kb on - strandat 198.317 kb on + strandat 198.317 kb on + strandat 198.318 kb on - strandat 198.359 kb on + strandat 198.359 kb on + strandat 198.359 kb on + strandat 198.360 kb on - strandat 198.360 kb on - strandat 198.389 kb on + strandat 198.389 kb on + strandat 198.389 kb on + strandat 198.389 kb on + strandat 198.390 kb on - strandat 198.390 kb on - strandat 198.390 kb on - strandat 198.390 kb on - strandat 198.804 kb on + strand, within MPMX19_02941at 198.805 kb on - strand, within MPMX19_02941at 198.805 kb on - strand, within MPMX19_02941at 198.805 kb on - strand, within MPMX19_02941at 198.805 kb on - strand, within MPMX19_02941at 198.969 kb on + strand, within MPMX19_02941at 198.969 kb on + strand, within MPMX19_02941at 198.970 kb on - strand, within MPMX19_02941at 198.970 kb on - strand, within MPMX19_02941at 198.970 kb on - strand, within MPMX19_02941at 198.970 kb on - strand, within MPMX19_02941at 199.212 kb on + strand, within MPMX19_02941at 199.212 kb on + strand, within MPMX19_02941at 199.212 kb on + strand, within MPMX19_02941at 199.212 kb on + strand, within MPMX19_02941at 199.212 kb on + strand, within MPMX19_02941at 199.212 kb on + strand, within MPMX19_02941at 199.212 kb on + strand, within MPMX19_02941at 199.213 kb on - strand, within MPMX19_02941at 199.213 kb on - strand, within MPMX19_02941at 199.213 kb on - strand, within MPMX19_02941at 199.213 kb on - strand, within MPMX19_02941at 199.213 kb on - strand, within MPMX19_02941at 199.219 kb on - strand, within MPMX19_02941at 199.219 kb on - strand, within MPMX19_02941at 199.378 kb on + strand, within MPMX19_02941at 199.378 kb on + strand, within MPMX19_02941at 199.378 kb on + strand, within MPMX19_02941at 199.379 kb on - strand, within MPMX19_02941at 199.379 kb on - strand, within MPMX19_02941at 199.379 kb on - strand, within MPMX19_02941at 199.379 kb on - strand, within MPMX19_02941at 199.379 kb on - strand, within MPMX19_02941at 199.404 kb on + strand, within MPMX19_02941at 199.404 kb on + strand, within MPMX19_02941at 199.404 kb on + strand, within MPMX19_02941at 199.404 kb on + strand, within MPMX19_02941at 199.405 kb on - strand, within MPMX19_02941at 199.518 kb on + strandat 199.518 kb on + strandat 199.657 kb on + strandat 199.658 kb on - strandat 199.788 kb on + strandat 199.788 kb on + strandat 199.789 kb on - strandat 199.905 kb on + strand, within MPMX19_02942at 199.905 kb on + strand, within MPMX19_02942at 199.905 kb on + strand, within MPMX19_02942at 199.905 kb on + strand, within MPMX19_02942at 199.905 kb on + strand, within MPMX19_02942at 199.906 kb on - strand, within MPMX19_02942at 199.906 kb on - strand, within MPMX19_02942at 199.906 kb on - strand, within MPMX19_02942at 199.906 kb on - strand, within MPMX19_02942at 199.963 kb on + strand, within MPMX19_02942at 199.964 kb on - strand, within MPMX19_02942at 199.964 kb on - strand, within MPMX19_02942at 200.276 kb on - strand, within MPMX19_02942at 200.276 kb on - strand, within MPMX19_02942at 200.374 kb on + strand, within MPMX19_02942at 200.374 kb on + strand, within MPMX19_02942at 200.375 kb on - strand, within MPMX19_02942

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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197,521 + MPMX19_02940 0.65 +0.9
197,521 + MPMX19_02940 0.65 -0.9
197,521 + MPMX19_02940 0.65 -0.4
197,522 - MPMX19_02940 0.65 -2.0
197,522 - MPMX19_02940 0.65 -0.7
197,522 - MPMX19_02940 0.65 -0.7
197,540 - MPMX19_02940 0.66 -0.9
197,540 - MPMX19_02940 0.66 -0.9
197,540 - MPMX19_02940 0.66 -0.1
197,540 - MPMX19_02940 0.66 +1.4
197,540 - MPMX19_02940 0.66 +0.8
197,557 + MPMX19_02940 0.67 -0.0
197,557 + MPMX19_02940 0.67 +0.2
197,558 - MPMX19_02940 0.67 -2.0
197,558 - MPMX19_02940 0.67 -1.2
197,558 - MPMX19_02940 0.67 -0.5
197,842 + MPMX19_02940 0.83 -0.3
197,842 + MPMX19_02940 0.83 -0.1
197,843 - MPMX19_02940 0.83 -0.3
197,843 - MPMX19_02940 0.83 -1.1
197,843 - MPMX19_02940 0.83 +0.2
197,843 - MPMX19_02940 0.83 -1.0
197,843 - MPMX19_02940 0.83 -0.5
197,843 - MPMX19_02940 0.83 +1.1
197,929 + MPMX19_02940 0.88 +0.9
198,003 + -0.7
198,004 - -0.2
198,309 + -1.8
198,309 + -1.1
198,309 + -1.2
198,309 + +0.3
198,309 + -0.2
198,309 + +1.1
198,309 + +0.3
198,309 + -0.8
198,309 + -1.1
198,309 + -0.7
198,310 - -0.6
198,310 - -0.9
198,310 - -0.9
198,310 - +0.3
198,310 - +0.5
198,317 + -1.0
198,317 + -1.2
198,318 - +1.1
198,359 + +0.5
198,359 + +2.6
198,359 + +2.1
198,360 - -1.0
198,360 - +1.3
198,389 + -1.0
198,389 + -0.6
198,389 + -0.2
198,389 + +0.2
198,390 - +0.7
198,390 - -0.2
198,390 - +1.9
198,390 - +0.1
198,804 + MPMX19_02941 0.30 +1.1
198,805 - MPMX19_02941 0.30 -0.4
198,805 - MPMX19_02941 0.30 +0.3
198,805 - MPMX19_02941 0.30 -0.1
198,805 - MPMX19_02941 0.30 -1.6
198,969 + MPMX19_02941 0.45 -1.6
198,969 + MPMX19_02941 0.45 -1.9
198,970 - MPMX19_02941 0.45 -0.0
198,970 - MPMX19_02941 0.45 -0.2
198,970 - MPMX19_02941 0.45 -0.9
198,970 - MPMX19_02941 0.45 -0.3
199,212 + MPMX19_02941 0.67 +0.2
199,212 + MPMX19_02941 0.67 -0.1
199,212 + MPMX19_02941 0.67 +0.3
199,212 + MPMX19_02941 0.67 +0.5
199,212 + MPMX19_02941 0.67 -0.9
199,212 + MPMX19_02941 0.67 -1.1
199,212 + MPMX19_02941 0.67 -1.1
199,213 - MPMX19_02941 0.67 +0.8
199,213 - MPMX19_02941 0.67 +0.8
199,213 - MPMX19_02941 0.67 +0.1
199,213 - MPMX19_02941 0.67 -1.7
199,213 - MPMX19_02941 0.67 +0.5
199,219 - MPMX19_02941 0.68 -1.5
199,219 - MPMX19_02941 0.68 +0.1
199,378 + MPMX19_02941 0.82 +1.7
199,378 + MPMX19_02941 0.82 -1.3
199,378 + MPMX19_02941 0.82 -0.6
199,379 - MPMX19_02941 0.82 -1.3
199,379 - MPMX19_02941 0.82 -0.2
199,379 - MPMX19_02941 0.82 -0.9
199,379 - MPMX19_02941 0.82 -0.8
199,379 - MPMX19_02941 0.82 -0.4
199,404 + MPMX19_02941 0.85 -1.9
199,404 + MPMX19_02941 0.85 -0.4
199,404 + MPMX19_02941 0.85 -1.2
199,404 + MPMX19_02941 0.85 -0.6
199,405 - MPMX19_02941 0.85 -0.5
199,518 + +0.2
199,518 + +0.7
199,657 + -1.7
199,658 - +1.1
199,788 + -1.1
199,788 + -0.9
199,789 - +0.9
199,905 + MPMX19_02942 0.15 -0.9
199,905 + MPMX19_02942 0.15 -0.4
199,905 + MPMX19_02942 0.15 +0.1
199,905 + MPMX19_02942 0.15 -1.1
199,905 + MPMX19_02942 0.15 +0.1
199,906 - MPMX19_02942 0.15 -1.0
199,906 - MPMX19_02942 0.15 -0.1
199,906 - MPMX19_02942 0.15 -0.1
199,906 - MPMX19_02942 0.15 -0.2
199,963 + MPMX19_02942 0.18 +0.5
199,964 - MPMX19_02942 0.18 +0.6
199,964 - MPMX19_02942 0.18 -0.7
200,276 - MPMX19_02942 0.33 -0.2
200,276 - MPMX19_02942 0.33 -0.1
200,374 + MPMX19_02942 0.38 -0.2
200,374 + MPMX19_02942 0.38 +0.3
200,375 - MPMX19_02942 0.38 -0.2

Or see this region's nucleotide sequence