Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02928

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02927 and MPMX19_02928 are separated by 545 nucleotidesMPMX19_02928 and MPMX19_02929 overlap by 4 nucleotidesMPMX19_02929 and MPMX19_02930 overlap by 4 nucleotides MPMX19_02927: MPMX19_02927 - 5,6,7,8-tetrahydromethanopterin hydro-lyase, at 181,830 to 182,357 _02927 MPMX19_02928: MPMX19_02928 - hypothetical protein, at 182,903 to 183,739 _02928 MPMX19_02929: MPMX19_02929 - hypothetical protein, at 183,736 to 184,644 _02929 MPMX19_02930: MPMX19_02930 - hypothetical protein, at 184,641 to 185,756 _02930 Position (kb) 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1at 182.247 kb on + strand, within MPMX19_02927at 182.247 kb on + strand, within MPMX19_02927at 182.247 kb on + strand, within MPMX19_02927at 182.248 kb on - strand, within MPMX19_02927at 182.248 kb on - strand, within MPMX19_02927at 182.248 kb on - strand, within MPMX19_02927at 182.248 kb on - strand, within MPMX19_02927at 182.253 kb on + strand, within MPMX19_02927at 182.253 kb on + strand, within MPMX19_02927at 182.254 kb on - strand, within MPMX19_02927at 182.445 kb on - strandat 182.476 kb on + strandat 182.476 kb on + strandat 182.476 kb on + strandat 182.476 kb on + strandat 182.477 kb on - strandat 182.477 kb on - strandat 182.477 kb on - strandat 182.836 kb on + strandat 182.836 kb on + strandat 182.836 kb on + strandat 182.837 kb on - strandat 182.854 kb on + strandat 182.967 kb on + strandat 182.967 kb on + strandat 182.967 kb on + strandat 182.967 kb on + strandat 182.968 kb on - strandat 182.968 kb on - strandat 182.968 kb on - strandat 182.968 kb on - strandat 182.968 kb on - strandat 182.968 kb on - strandat 182.968 kb on - strandat 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.073 kb on - strand, within MPMX19_02928at 183.073 kb on - strand, within MPMX19_02928at 183.073 kb on - strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.223 kb on - strand, within MPMX19_02928at 183.365 kb on + strand, within MPMX19_02928at 183.365 kb on + strand, within MPMX19_02928at 183.365 kb on + strand, within MPMX19_02928at 183.365 kb on + strand, within MPMX19_02928at 183.366 kb on - strand, within MPMX19_02928at 183.366 kb on - strand, within MPMX19_02928at 183.366 kb on - strand, within MPMX19_02928at 183.468 kb on + strand, within MPMX19_02928at 183.624 kb on + strand, within MPMX19_02928at 183.624 kb on + strand, within MPMX19_02928at 183.625 kb on - strand, within MPMX19_02928at 183.625 kb on - strand, within MPMX19_02928at 183.625 kb on - strand, within MPMX19_02928at 183.625 kb on - strand, within MPMX19_02928at 183.625 kb on - strand, within MPMX19_02928at 183.675 kb on + strandat 183.675 kb on + strandat 183.714 kb on + strandat 183.914 kb on + strand, within MPMX19_02929at 183.914 kb on + strand, within MPMX19_02929at 183.914 kb on + strand, within MPMX19_02929at 183.914 kb on + strand, within MPMX19_02929at 183.914 kb on + strand, within MPMX19_02929at 183.915 kb on - strand, within MPMX19_02929at 184.124 kb on + strand, within MPMX19_02929at 184.124 kb on + strand, within MPMX19_02929at 184.124 kb on + strand, within MPMX19_02929at 184.124 kb on + strand, within MPMX19_02929at 184.125 kb on - strand, within MPMX19_02929at 184.125 kb on - strand, within MPMX19_02929at 184.125 kb on - strand, within MPMX19_02929at 184.125 kb on - strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.127 kb on + strand, within MPMX19_02929at 184.128 kb on - strand, within MPMX19_02929at 184.128 kb on - strand, within MPMX19_02929at 184.367 kb on + strand, within MPMX19_02929at 184.367 kb on + strand, within MPMX19_02929at 184.367 kb on + strand, within MPMX19_02929at 184.367 kb on + strand, within MPMX19_02929at 184.368 kb on - strand, within MPMX19_02929at 184.672 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
182,247 + MPMX19_02927 0.79 -1.4
182,247 + MPMX19_02927 0.79 -0.4
182,247 + MPMX19_02927 0.79 -1.1
182,248 - MPMX19_02927 0.79 -0.7
182,248 - MPMX19_02927 0.79 -0.5
182,248 - MPMX19_02927 0.79 +1.4
182,248 - MPMX19_02927 0.79 -1.1
182,253 + MPMX19_02927 0.80 +1.5
182,253 + MPMX19_02927 0.80 -2.1
182,254 - MPMX19_02927 0.80 -0.2
182,445 - -0.5
182,476 + -0.8
182,476 + -0.7
182,476 + +0.1
182,476 + +0.9
182,477 - -1.1
182,477 - -0.8
182,477 - +0.4
182,836 + +0.7
182,836 + +0.5
182,836 + -0.0
182,837 - +0.5
182,854 + -1.3
182,967 + -1.7
182,967 + +0.5
182,967 + -0.0
182,967 + +0.3
182,968 - +1.5
182,968 - -1.1
182,968 - -0.5
182,968 - +0.3
182,968 - -1.0
182,968 - -1.3
182,968 - -0.7
183,072 + MPMX19_02928 0.20 +0.4
183,072 + MPMX19_02928 0.20 +0.2
183,072 + MPMX19_02928 0.20 -0.1
183,072 + MPMX19_02928 0.20 -0.3
183,072 + MPMX19_02928 0.20 -1.2
183,072 + MPMX19_02928 0.20 -2.4
183,072 + MPMX19_02928 0.20 -0.9
183,072 + MPMX19_02928 0.20 -0.3
183,072 + MPMX19_02928 0.20 +0.2
183,073 - MPMX19_02928 0.20 +0.8
183,073 - MPMX19_02928 0.20 -0.7
183,073 - MPMX19_02928 0.20 +1.6
183,135 + MPMX19_02928 0.28 -0.5
183,135 + MPMX19_02928 0.28 +0.4
183,135 + MPMX19_02928 0.28 +1.0
183,135 + MPMX19_02928 0.28 -0.5
183,135 + MPMX19_02928 0.28 -0.2
183,135 + MPMX19_02928 0.28 -0.7
183,135 + MPMX19_02928 0.28 +0.1
183,135 + MPMX19_02928 0.28 +0.5
183,135 + MPMX19_02928 0.28 -0.6
183,135 + MPMX19_02928 0.28 -0.8
183,135 + MPMX19_02928 0.28 -0.2
183,135 + MPMX19_02928 0.28 -0.1
183,136 - MPMX19_02928 0.28 -0.3
183,136 - MPMX19_02928 0.28 -1.9
183,136 - MPMX19_02928 0.28 -2.1
183,136 - MPMX19_02928 0.28 -3.0
183,136 - MPMX19_02928 0.28 -0.1
183,136 - MPMX19_02928 0.28 -0.8
183,136 - MPMX19_02928 0.28 -1.2
183,223 - MPMX19_02928 0.38 -0.6
183,365 + MPMX19_02928 0.55 -0.2
183,365 + MPMX19_02928 0.55 -1.5
183,365 + MPMX19_02928 0.55 -1.1
183,365 + MPMX19_02928 0.55 +1.0
183,366 - MPMX19_02928 0.55 -0.9
183,366 - MPMX19_02928 0.55 -0.3
183,366 - MPMX19_02928 0.55 +0.3
183,468 + MPMX19_02928 0.68 +1.1
183,624 + MPMX19_02928 0.86 -0.1
183,624 + MPMX19_02928 0.86 +0.2
183,625 - MPMX19_02928 0.86 -1.5
183,625 - MPMX19_02928 0.86 -1.3
183,625 - MPMX19_02928 0.86 -0.6
183,625 - MPMX19_02928 0.86 -1.5
183,625 - MPMX19_02928 0.86 -2.0
183,675 + +1.3
183,675 + -1.0
183,714 + -0.5
183,914 + MPMX19_02929 0.20 -1.8
183,914 + MPMX19_02929 0.20 +0.1
183,914 + MPMX19_02929 0.20 -1.8
183,914 + MPMX19_02929 0.20 -1.4
183,914 + MPMX19_02929 0.20 -0.9
183,915 - MPMX19_02929 0.20 -0.5
184,124 + MPMX19_02929 0.43 -0.6
184,124 + MPMX19_02929 0.43 -1.5
184,124 + MPMX19_02929 0.43 -0.1
184,124 + MPMX19_02929 0.43 +0.1
184,125 - MPMX19_02929 0.43 -0.7
184,125 - MPMX19_02929 0.43 -2.1
184,125 - MPMX19_02929 0.43 -0.8
184,125 - MPMX19_02929 0.43 -0.7
184,127 + MPMX19_02929 0.43 -0.5
184,127 + MPMX19_02929 0.43 -1.9
184,127 + MPMX19_02929 0.43 -2.4
184,127 + MPMX19_02929 0.43 -0.4
184,127 + MPMX19_02929 0.43 -0.3
184,127 + MPMX19_02929 0.43 -0.7
184,127 + MPMX19_02929 0.43 +0.4
184,127 + MPMX19_02929 0.43 -0.7
184,128 - MPMX19_02929 0.43 -0.3
184,128 - MPMX19_02929 0.43 -0.9
184,367 + MPMX19_02929 0.69 -0.7
184,367 + MPMX19_02929 0.69 -0.2
184,367 + MPMX19_02929 0.69 -1.5
184,367 + MPMX19_02929 0.69 -2.2
184,368 - MPMX19_02929 0.70 -0.0
184,672 + +0.5

Or see this region's nucleotide sequence