Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02897 and MPMX19_02898 overlap by 14 nucleotides MPMX19_02898 and MPMX19_02899 are separated by 505 nucleotides
MPMX19_02897: MPMX19_02897 - hypothetical protein, at 151,836 to 152,960
_02897
MPMX19_02898: MPMX19_02898 - hypothetical protein, at 152,947 to 154,317
_02898
MPMX19_02899: MPMX19_02899 - hypothetical protein, at 154,823 to 155,476
_02899
Position (kb) 152
153
154
155 Strain fitness (log2 ratio) -2
-1
0
1
2 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.213 kb on - strand, within MPMX19_02897 at 152.213 kb on - strand, within MPMX19_02897 at 152.213 kb on - strand, within MPMX19_02897 at 152.213 kb on - strand, within MPMX19_02897 at 152.257 kb on + strand, within MPMX19_02897 at 152.258 kb on - strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.467 kb on - strand, within MPMX19_02897 at 152.467 kb on - strand, within MPMX19_02897 at 152.467 kb on - strand, within MPMX19_02897 at 152.467 kb on - strand, within MPMX19_02897 at 152.467 kb on - strand, within MPMX19_02897 at 152.467 kb on - strand, within MPMX19_02897 at 152.518 kb on + strand, within MPMX19_02897 at 152.519 kb on - strand, within MPMX19_02897 at 152.696 kb on - strand, within MPMX19_02897 at 152.761 kb on + strand, within MPMX19_02897 at 152.761 kb on + strand, within MPMX19_02897 at 152.761 kb on + strand, within MPMX19_02897 at 152.762 kb on - strand, within MPMX19_02897 at 152.776 kb on + strand, within MPMX19_02897 at 152.872 kb on + strand at 152.873 kb on - strand at 152.873 kb on - strand at 152.873 kb on - strand at 152.943 kb on - strand at 152.943 kb on - strand at 153.030 kb on - strand at 153.030 kb on - strand at 153.030 kb on - strand at 153.030 kb on - strand at 153.030 kb on - strand at 153.591 kb on + strand, within MPMX19_02898 at 153.591 kb on + strand, within MPMX19_02898 at 153.591 kb on + strand, within MPMX19_02898 at 153.591 kb on + strand, within MPMX19_02898 at 153.591 kb on + strand, within MPMX19_02898 at 153.591 kb on + strand, within MPMX19_02898 at 153.592 kb on - strand, within MPMX19_02898 at 153.592 kb on - strand, within MPMX19_02898 at 153.852 kb on - strand, within MPMX19_02898 at 153.868 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.888 kb on - strand, within MPMX19_02898 at 153.888 kb on - strand, within MPMX19_02898 at 153.944 kb on + strand, within MPMX19_02898 at 153.944 kb on + strand, within MPMX19_02898 at 153.945 kb on - strand, within MPMX19_02898 at 154.026 kb on + strand, within MPMX19_02898 at 154.060 kb on + strand, within MPMX19_02898 at 154.060 kb on + strand, within MPMX19_02898 at 154.060 kb on + strand, within MPMX19_02898 at 154.061 kb on - strand, within MPMX19_02898 at 154.098 kb on - strand, within MPMX19_02898 at 154.098 kb on - strand, within MPMX19_02898 at 154.112 kb on + strand, within MPMX19_02898 at 154.112 kb on + strand, within MPMX19_02898 at 154.112 kb on + strand, within MPMX19_02898 at 154.197 kb on + strand at 154.197 kb on + strand at 154.197 kb on + strand at 154.198 kb on - strand at 154.198 kb on - strand at 154.198 kb on - strand at 154.198 kb on - strand at 154.383 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.493 kb on + strand at 154.494 kb on - strand at 154.494 kb on - strand at 154.610 kb on + strand at 154.610 kb on + strand at 154.611 kb on - strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 155.032 kb on + strand, within MPMX19_02899 at 155.032 kb on + strand, within MPMX19_02899 at 155.032 kb on + strand, within MPMX19_02899 at 155.032 kb on + strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.195 kb on + strand, within MPMX19_02899 at 155.195 kb on + strand, within MPMX19_02899 at 155.196 kb on - strand, within MPMX19_02899 at 155.196 kb on - strand, within MPMX19_02899 at 155.196 kb on - strand, within MPMX19_02899 at 155.196 kb on - strand, within MPMX19_02899
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 152,212 + MPMX19_02897 0.33 -0.3 152,212 + MPMX19_02897 0.33 +0.4 152,212 + MPMX19_02897 0.33 +1.1 152,212 + MPMX19_02897 0.33 -0.4 152,212 + MPMX19_02897 0.33 +0.0 152,212 + MPMX19_02897 0.33 +0.9 152,212 + MPMX19_02897 0.33 -0.9 152,212 + MPMX19_02897 0.33 -1.8 152,212 + MPMX19_02897 0.33 -0.7 152,212 + MPMX19_02897 0.33 -0.8 152,213 - MPMX19_02897 0.34 -0.5 152,213 - MPMX19_02897 0.34 -1.5 152,213 - MPMX19_02897 0.34 +1.1 152,213 - MPMX19_02897 0.34 -1.6 152,257 + MPMX19_02897 0.37 +1.1 152,258 - MPMX19_02897 0.38 -0.5 152,466 + MPMX19_02897 0.56 +0.5 152,466 + MPMX19_02897 0.56 -0.7 152,466 + MPMX19_02897 0.56 +0.5 152,466 + MPMX19_02897 0.56 -1.1 152,466 + MPMX19_02897 0.56 -0.9 152,466 + MPMX19_02897 0.56 -0.1 152,466 + MPMX19_02897 0.56 -0.1 152,467 - MPMX19_02897 0.56 -0.3 152,467 - MPMX19_02897 0.56 -0.9 152,467 - MPMX19_02897 0.56 +0.1 152,467 - MPMX19_02897 0.56 -0.7 152,467 - MPMX19_02897 0.56 -0.5 152,467 - MPMX19_02897 0.56 +0.6 152,518 + MPMX19_02897 0.61 +1.1 152,519 - MPMX19_02897 0.61 -0.1 152,696 - MPMX19_02897 0.76 -0.5 152,761 + MPMX19_02897 0.82 -0.7 152,761 + MPMX19_02897 0.82 +0.3 152,761 + MPMX19_02897 0.82 -1.0 152,762 - MPMX19_02897 0.82 -1.8 152,776 + MPMX19_02897 0.84 -0.1 152,872 + -2.4 152,873 - -0.6 152,873 - +0.1 152,873 - +0.3 152,943 - -1.5 152,943 - -0.9 153,030 - +2.1 153,030 - -0.4 153,030 - -0.7 153,030 - -0.7 153,030 - +0.4 153,591 + MPMX19_02898 0.47 -1.6 153,591 + MPMX19_02898 0.47 +0.9 153,591 + MPMX19_02898 0.47 -0.3 153,591 + MPMX19_02898 0.47 -1.9 153,591 + MPMX19_02898 0.47 -0.0 153,591 + MPMX19_02898 0.47 -0.9 153,592 - MPMX19_02898 0.47 -0.4 153,592 - MPMX19_02898 0.47 -1.3 153,852 - MPMX19_02898 0.66 -0.5 153,868 + MPMX19_02898 0.67 +0.5 153,887 + MPMX19_02898 0.69 -0.1 153,887 + MPMX19_02898 0.69 +0.3 153,887 + MPMX19_02898 0.69 -0.3 153,887 + MPMX19_02898 0.69 -0.6 153,887 + MPMX19_02898 0.69 +0.9 153,887 + MPMX19_02898 0.69 +0.1 153,887 + MPMX19_02898 0.69 -1.0 153,887 + MPMX19_02898 0.69 -0.9 153,888 - MPMX19_02898 0.69 -0.8 153,888 - MPMX19_02898 0.69 -1.5 153,944 + MPMX19_02898 0.73 +0.7 153,944 + MPMX19_02898 0.73 -0.1 153,945 - MPMX19_02898 0.73 +0.5 154,026 + MPMX19_02898 0.79 -0.8 154,060 + MPMX19_02898 0.81 -1.2 154,060 + MPMX19_02898 0.81 -0.3 154,060 + MPMX19_02898 0.81 -1.4 154,061 - MPMX19_02898 0.81 -0.4 154,098 - MPMX19_02898 0.84 -0.5 154,098 - MPMX19_02898 0.84 +1.0 154,112 + MPMX19_02898 0.85 -0.6 154,112 + MPMX19_02898 0.85 +1.3 154,112 + MPMX19_02898 0.85 +0.5 154,197 + -0.8 154,197 + +1.1 154,197 + -0.7 154,198 - -0.9 154,198 - -0.9 154,198 - -0.6 154,198 - -1.6 154,383 + +0.3 154,453 + +0.3 154,453 + +0.1 154,453 + -1.4 154,453 + +0.8 154,453 + -0.6 154,453 + -0.3 154,453 + -0.2 154,453 + +0.8 154,454 - -0.2 154,454 - +2.1 154,454 - +0.4 154,454 - +0.5 154,454 - -0.5 154,454 - -1.2 154,493 + +0.4 154,494 - -0.2 154,494 - +0.9 154,610 + -0.2 154,610 + +0.3 154,611 - -1.4 154,874 + -1.3 154,874 + -0.6 154,874 + -0.5 154,874 + -2.0 154,874 + -2.1 154,874 + -0.5 154,874 + -0.7 154,874 + +0.6 154,874 + -0.9 154,874 + -0.8 154,875 - +0.3 154,875 - -0.5 154,875 - -0.2 154,875 - +0.4 154,875 - +1.1 154,875 - +0.5 154,875 - +0.1 154,875 - +1.3 154,875 - -0.0 154,875 - +0.3 154,937 + MPMX19_02899 0.17 -0.2 154,937 + MPMX19_02899 0.17 +0.5 154,937 + MPMX19_02899 0.17 -0.5 154,937 + MPMX19_02899 0.17 +1.1 154,937 + MPMX19_02899 0.17 -0.5 154,937 + MPMX19_02899 0.17 -0.2 154,937 + MPMX19_02899 0.17 -1.1 154,937 + MPMX19_02899 0.17 +0.1 154,937 + MPMX19_02899 0.17 -1.9 154,938 - MPMX19_02899 0.18 +0.2 154,938 - MPMX19_02899 0.18 -1.0 154,938 - MPMX19_02899 0.18 -1.4 154,938 - MPMX19_02899 0.18 -1.0 154,938 - MPMX19_02899 0.18 +0.6 154,938 - MPMX19_02899 0.18 -0.4 154,938 - MPMX19_02899 0.18 +0.3 154,938 - MPMX19_02899 0.18 -0.9 155,032 + MPMX19_02899 0.32 -2.1 155,032 + MPMX19_02899 0.32 +0.2 155,032 + MPMX19_02899 0.32 +0.8 155,032 + MPMX19_02899 0.32 +1.1 155,033 - MPMX19_02899 0.32 +0.5 155,033 - MPMX19_02899 0.32 -0.1 155,033 - MPMX19_02899 0.32 -1.1 155,033 - MPMX19_02899 0.32 -0.8 155,033 - MPMX19_02899 0.32 +0.4 155,033 - MPMX19_02899 0.32 -1.2 155,033 - MPMX19_02899 0.32 +0.2 155,195 + MPMX19_02899 0.57 -1.6 155,195 + MPMX19_02899 0.57 -1.2 155,196 - MPMX19_02899 0.57 +0.1 155,196 - MPMX19_02899 0.57 -0.4 155,196 - MPMX19_02899 0.57 -0.7 155,196 - MPMX19_02899 0.57 -0.5
Or see this region's nucleotide sequence