Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02889 and MPMX19_02890 are separated by 47 nucleotides MPMX19_02890 and MPMX19_02891 are separated by 33 nucleotides
MPMX19_02889: MPMX19_02889 - Galactarate dehydratase (L-threo-forming), at 140,685 to 142,208
_02889
MPMX19_02890: MPMX19_02890 - Glucarate dehydratase, at 142,256 to 143,593
_02890
MPMX19_02891: MPMX19_02891 - Mannonate dehydratase, at 143,627 to 144,715
_02891
Position (kb) 142
143
144 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 141.343 kb on + strand, within MPMX19_02889 at 141.703 kb on + strand, within MPMX19_02889 at 141.703 kb on + strand, within MPMX19_02889 at 141.703 kb on + strand, within MPMX19_02889 at 141.703 kb on + strand, within MPMX19_02889 at 141.703 kb on + strand, within MPMX19_02889 at 141.703 kb on + strand, within MPMX19_02889 at 141.704 kb on - strand, within MPMX19_02889 at 141.704 kb on - strand, within MPMX19_02889 at 141.704 kb on - strand, within MPMX19_02889 at 141.704 kb on - strand, within MPMX19_02889 at 141.704 kb on - strand, within MPMX19_02889 at 141.742 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.880 kb on + strand, within MPMX19_02889 at 141.880 kb on + strand, within MPMX19_02889 at 141.880 kb on + strand, within MPMX19_02889 at 141.933 kb on - strand, within MPMX19_02889 at 141.933 kb on - strand, within MPMX19_02889 at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.308 kb on + strand at 142.308 kb on + strand at 142.308 kb on + strand at 142.308 kb on + strand at 142.308 kb on + strand at 142.308 kb on + strand at 142.308 kb on + strand at 142.309 kb on - strand at 142.309 kb on - strand at 142.309 kb on - strand at 142.309 kb on - strand at 142.356 kb on + strand at 142.356 kb on + strand at 142.356 kb on + strand at 142.357 kb on - strand at 142.357 kb on - strand at 142.357 kb on - strand at 142.821 kb on + strand, within MPMX19_02890 at 142.821 kb on + strand, within MPMX19_02890 at 142.821 kb on + strand, within MPMX19_02890 at 142.822 kb on - strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.145 kb on + strand, within MPMX19_02890 at 143.145 kb on + strand, within MPMX19_02890 at 143.145 kb on + strand, within MPMX19_02890 at 143.145 kb on + strand, within MPMX19_02890 at 143.146 kb on - strand, within MPMX19_02890 at 143.490 kb on + strand at 143.490 kb on + strand at 143.490 kb on + strand at 143.490 kb on + strand at 143.491 kb on - strand at 143.491 kb on - strand at 143.653 kb on + strand at 143.654 kb on - strand at 143.655 kb on + strand at 143.656 kb on - strand at 143.739 kb on + strand, within MPMX19_02891 at 143.740 kb on - strand, within MPMX19_02891 at 143.820 kb on + strand, within MPMX19_02891 at 143.821 kb on - strand, within MPMX19_02891 at 143.821 kb on - strand, within MPMX19_02891 at 143.821 kb on - strand, within MPMX19_02891 at 143.857 kb on + strand, within MPMX19_02891 at 143.857 kb on + strand, within MPMX19_02891 at 143.858 kb on - strand, within MPMX19_02891 at 143.858 kb on - strand, within MPMX19_02891 at 144.123 kb on + strand, within MPMX19_02891 at 144.123 kb on + strand, within MPMX19_02891 at 144.123 kb on + strand, within MPMX19_02891 at 144.123 kb on + strand, within MPMX19_02891 at 144.124 kb on - strand, within MPMX19_02891 at 144.124 kb on - strand, within MPMX19_02891 at 144.124 kb on - strand, within MPMX19_02891 at 144.268 kb on - strand, within MPMX19_02891 at 144.268 kb on - strand, within MPMX19_02891 at 144.297 kb on + strand, within MPMX19_02891 at 144.297 kb on + strand, within MPMX19_02891 at 144.297 kb on + strand, within MPMX19_02891 at 144.297 kb on + strand, within MPMX19_02891 at 144.298 kb on - strand, within MPMX19_02891 at 144.298 kb on - strand, within MPMX19_02891 at 144.298 kb on - strand, within MPMX19_02891 at 144.298 kb on - strand, within MPMX19_02891 at 144.384 kb on + strand, within MPMX19_02891 at 144.385 kb on - strand, within MPMX19_02891 at 144.385 kb on - strand, within MPMX19_02891 at 144.385 kb on - strand, within MPMX19_02891
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 141,343 + MPMX19_02889 0.43 +1.4 141,703 + MPMX19_02889 0.67 -1.6 141,703 + MPMX19_02889 0.67 +0.0 141,703 + MPMX19_02889 0.67 -0.6 141,703 + MPMX19_02889 0.67 +0.2 141,703 + MPMX19_02889 0.67 -0.4 141,703 + MPMX19_02889 0.67 -0.9 141,704 - MPMX19_02889 0.67 +0.1 141,704 - MPMX19_02889 0.67 -0.7 141,704 - MPMX19_02889 0.67 -0.0 141,704 - MPMX19_02889 0.67 -0.4 141,704 - MPMX19_02889 0.67 -0.2 141,742 + MPMX19_02889 0.69 -0.1 141,878 + MPMX19_02889 0.78 -1.5 141,878 + MPMX19_02889 0.78 +0.6 141,878 + MPMX19_02889 0.78 -0.8 141,878 + MPMX19_02889 0.78 -0.8 141,878 + MPMX19_02889 0.78 -0.9 141,878 + MPMX19_02889 0.78 -0.3 141,878 + MPMX19_02889 0.78 +1.0 141,878 + MPMX19_02889 0.78 -0.6 141,878 + MPMX19_02889 0.78 -2.7 141,878 + MPMX19_02889 0.78 -0.5 141,878 + MPMX19_02889 0.78 -0.6 141,878 + MPMX19_02889 0.78 -0.8 141,878 + MPMX19_02889 0.78 +0.4 141,878 + MPMX19_02889 0.78 -0.4 141,878 + MPMX19_02889 0.78 -0.6 141,878 + MPMX19_02889 0.78 -1.1 141,878 + MPMX19_02889 0.78 -0.0 141,878 + MPMX19_02889 0.78 -0.2 141,878 + MPMX19_02889 0.78 +0.0 141,878 + MPMX19_02889 0.78 +0.0 141,879 - MPMX19_02889 0.78 +0.1 141,879 - MPMX19_02889 0.78 +1.1 141,879 - MPMX19_02889 0.78 -0.6 141,879 - MPMX19_02889 0.78 +0.6 141,879 - MPMX19_02889 0.78 -0.5 141,879 - MPMX19_02889 0.78 -0.0 141,879 - MPMX19_02889 0.78 -1.1 141,879 - MPMX19_02889 0.78 +1.8 141,879 - MPMX19_02889 0.78 -0.1 141,879 - MPMX19_02889 0.78 +0.8 141,879 - MPMX19_02889 0.78 +1.7 141,879 - MPMX19_02889 0.78 +0.9 141,879 - MPMX19_02889 0.78 -1.7 141,879 - MPMX19_02889 0.78 -0.1 141,879 - MPMX19_02889 0.78 -0.3 141,879 - MPMX19_02889 0.78 -0.4 141,879 - MPMX19_02889 0.78 -1.2 141,879 - MPMX19_02889 0.78 -1.5 141,879 - MPMX19_02889 0.78 -0.1 141,880 + MPMX19_02889 0.78 +0.7 141,880 + MPMX19_02889 0.78 +0.4 141,880 + MPMX19_02889 0.78 -1.7 141,933 - MPMX19_02889 0.82 -0.4 141,933 - MPMX19_02889 0.82 -0.5 142,189 + -0.8 142,189 + -1.0 142,189 + +2.1 142,189 + -1.1 142,189 + -1.7 142,189 + -0.5 142,189 + +0.1 142,189 + -0.4 142,189 + +0.4 142,189 + -0.8 142,189 + -1.1 142,189 + -0.2 142,189 + -0.4 142,189 + -0.2 142,189 + +1.1 142,189 + -0.5 142,190 - +0.5 142,190 - -0.2 142,190 - -1.2 142,190 - -0.7 142,190 - +1.7 142,190 - -1.7 142,190 - +0.9 142,190 - -2.4 142,190 - +1.5 142,190 - -0.3 142,190 - -0.9 142,190 - -1.9 142,190 - -1.1 142,308 + -1.0 142,308 + -0.5 142,308 + -1.1 142,308 + -0.2 142,308 + -0.9 142,308 + -0.1 142,308 + +1.1 142,309 - -1.4 142,309 - -0.2 142,309 - -0.4 142,309 - -2.0 142,356 + +1.1 142,356 + -1.5 142,356 + -0.3 142,357 - +0.2 142,357 - +0.1 142,357 - -0.1 142,821 + MPMX19_02890 0.42 -0.2 142,821 + MPMX19_02890 0.42 +0.5 142,821 + MPMX19_02890 0.42 -1.0 142,822 - MPMX19_02890 0.42 +2.1 143,136 + MPMX19_02890 0.66 -0.7 143,136 + MPMX19_02890 0.66 +1.5 143,136 + MPMX19_02890 0.66 -0.1 143,136 + MPMX19_02890 0.66 +0.5 143,136 + MPMX19_02890 0.66 -0.3 143,136 + MPMX19_02890 0.66 -0.7 143,136 + MPMX19_02890 0.66 +0.4 143,136 + MPMX19_02890 0.66 -0.4 143,137 - MPMX19_02890 0.66 -0.9 143,137 - MPMX19_02890 0.66 -1.1 143,137 - MPMX19_02890 0.66 +0.9 143,137 - MPMX19_02890 0.66 -0.3 143,137 - MPMX19_02890 0.66 -0.1 143,137 - MPMX19_02890 0.66 -1.2 143,137 - MPMX19_02890 0.66 -1.4 143,137 - MPMX19_02890 0.66 +0.4 143,137 - MPMX19_02890 0.66 +0.5 143,145 + MPMX19_02890 0.66 +0.5 143,145 + MPMX19_02890 0.66 -2.5 143,145 + MPMX19_02890 0.66 -1.2 143,145 + MPMX19_02890 0.66 -0.9 143,146 - MPMX19_02890 0.67 -0.4 143,490 + -0.5 143,490 + +0.9 143,490 + -1.7 143,490 + -1.0 143,491 - -1.1 143,491 - +0.5 143,653 + -0.4 143,654 - -2.2 143,655 + +1.5 143,656 - -0.4 143,739 + MPMX19_02891 0.10 -2.3 143,740 - MPMX19_02891 0.10 -0.4 143,820 + MPMX19_02891 0.18 -1.4 143,821 - MPMX19_02891 0.18 +0.2 143,821 - MPMX19_02891 0.18 -0.9 143,821 - MPMX19_02891 0.18 +1.4 143,857 + MPMX19_02891 0.21 -0.7 143,857 + MPMX19_02891 0.21 -0.2 143,858 - MPMX19_02891 0.21 +0.9 143,858 - MPMX19_02891 0.21 +0.1 144,123 + MPMX19_02891 0.46 -2.9 144,123 + MPMX19_02891 0.46 -1.3 144,123 + MPMX19_02891 0.46 -1.7 144,123 + MPMX19_02891 0.46 +0.1 144,124 - MPMX19_02891 0.46 +1.1 144,124 - MPMX19_02891 0.46 -0.1 144,124 - MPMX19_02891 0.46 -0.9 144,268 - MPMX19_02891 0.59 -0.6 144,268 - MPMX19_02891 0.59 -0.0 144,297 + MPMX19_02891 0.62 -0.6 144,297 + MPMX19_02891 0.62 +0.1 144,297 + MPMX19_02891 0.62 +0.1 144,297 + MPMX19_02891 0.62 -0.1 144,298 - MPMX19_02891 0.62 -0.7 144,298 - MPMX19_02891 0.62 -1.6 144,298 - MPMX19_02891 0.62 -1.0 144,298 - MPMX19_02891 0.62 +0.3 144,384 + MPMX19_02891 0.70 -1.6 144,385 - MPMX19_02891 0.70 +0.6 144,385 - MPMX19_02891 0.70 -0.1 144,385 - MPMX19_02891 0.70 +0.4
Or see this region's nucleotide sequence