Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02886 and MPMX19_02887 are separated by 131 nucleotides MPMX19_02887 and MPMX19_02888 are separated by 183 nucleotides
MPMX19_02886: MPMX19_02886 - HTH-type transcriptional regulator CynR, at 136,552 to 137,484
_02886
MPMX19_02887: MPMX19_02887 - Methyl-accepting chemotaxis protein, at 137,616 to 139,310
_02887
MPMX19_02888: MPMX19_02888 - 6-phosphogluconolactonase, at 139,494 to 140,594
_02888
Position (kb) 137
138
139
140 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.521 kb on + strand at 137.521 kb on + strand at 137.521 kb on + strand at 137.521 kb on + strand at 137.521 kb on + strand at 137.521 kb on + strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.523 kb on + strand at 137.523 kb on + strand at 137.523 kb on + strand at 137.523 kb on + strand at 137.524 kb on - strand at 137.524 kb on - strand at 137.524 kb on - strand at 137.524 kb on - strand at 137.527 kb on - strand at 137.527 kb on - strand at 137.527 kb on - strand at 137.569 kb on + strand at 137.575 kb on - strand at 137.877 kb on + strand, within MPMX19_02887 at 137.877 kb on + strand, within MPMX19_02887 at 137.877 kb on + strand, within MPMX19_02887 at 137.877 kb on + strand, within MPMX19_02887 at 137.877 kb on + strand, within MPMX19_02887 at 137.877 kb on + strand, within MPMX19_02887 at 137.878 kb on - strand, within MPMX19_02887 at 137.878 kb on - strand, within MPMX19_02887 at 137.878 kb on - strand, within MPMX19_02887 at 137.878 kb on - strand, within MPMX19_02887 at 137.878 kb on - strand, within MPMX19_02887 at 137.878 kb on - strand, within MPMX19_02887 at 137.896 kb on - strand, within MPMX19_02887 at 137.896 kb on - strand, within MPMX19_02887 at 137.896 kb on - strand, within MPMX19_02887 at 137.907 kb on + strand, within MPMX19_02887 at 137.908 kb on - strand, within MPMX19_02887 at 137.908 kb on - strand, within MPMX19_02887 at 137.997 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.103 kb on - strand, within MPMX19_02887 at 138.103 kb on - strand, within MPMX19_02887 at 138.103 kb on - strand, within MPMX19_02887 at 138.103 kb on - strand, within MPMX19_02887 at 138.103 kb on - strand, within MPMX19_02887 at 138.103 kb on - strand, within MPMX19_02887 at 138.115 kb on - strand, within MPMX19_02887 at 138.150 kb on + strand, within MPMX19_02887 at 138.151 kb on - strand, within MPMX19_02887 at 138.151 kb on - strand, within MPMX19_02887 at 138.175 kb on - strand, within MPMX19_02887 at 138.232 kb on + strand, within MPMX19_02887 at 138.232 kb on + strand, within MPMX19_02887 at 138.233 kb on - strand, within MPMX19_02887 at 138.233 kb on - strand, within MPMX19_02887 at 139.334 kb on - strand at 139.334 kb on - strand at 139.336 kb on - strand at 139.336 kb on - strand at 139.336 kb on - strand at 139.336 kb on - strand at 139.336 kb on - strand at 139.336 kb on - strand at 139.336 kb on - strand at 139.336 kb on - strand at 139.336 kb on - strand at 139.492 kb on + strand at 139.588 kb on + strand at 139.589 kb on - strand at 139.762 kb on + strand, within MPMX19_02888 at 139.762 kb on + strand, within MPMX19_02888 at 139.762 kb on + strand, within MPMX19_02888 at 139.762 kb on + strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.879 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.922 kb on - strand, within MPMX19_02888 at 139.922 kb on - strand, within MPMX19_02888 at 139.922 kb on - strand, within MPMX19_02888 at 139.922 kb on - strand, within MPMX19_02888 at 139.922 kb on - strand, within MPMX19_02888 at 140.198 kb on - strand, within MPMX19_02888 at 140.198 kb on - strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 137,224 + MPMX19_02886 0.72 +0.6 137,224 + MPMX19_02886 0.72 -0.0 137,224 + MPMX19_02886 0.72 -1.2 137,224 + MPMX19_02886 0.72 +0.0 137,224 + MPMX19_02886 0.72 -0.1 137,224 + MPMX19_02886 0.72 +0.0 137,224 + MPMX19_02886 0.72 +0.5 137,224 + MPMX19_02886 0.72 -0.7 137,224 + MPMX19_02886 0.72 -0.0 137,224 + MPMX19_02886 0.72 -2.4 137,224 + MPMX19_02886 0.72 +0.9 137,224 + MPMX19_02886 0.72 +0.1 137,224 + MPMX19_02886 0.72 -0.5 137,224 + MPMX19_02886 0.72 +0.2 137,224 + MPMX19_02886 0.72 +0.2 137,224 + MPMX19_02886 0.72 -0.6 137,224 + MPMX19_02886 0.72 +0.1 137,224 + MPMX19_02886 0.72 -1.2 137,224 + MPMX19_02886 0.72 -0.1 137,224 + MPMX19_02886 0.72 -1.2 137,224 + MPMX19_02886 0.72 +1.1 137,224 + MPMX19_02886 0.72 -1.6 137,224 + MPMX19_02886 0.72 -0.0 137,225 - MPMX19_02886 0.72 -1.1 137,225 - MPMX19_02886 0.72 -1.8 137,225 - MPMX19_02886 0.72 -1.1 137,225 - MPMX19_02886 0.72 -0.4 137,225 - MPMX19_02886 0.72 -0.9 137,225 - MPMX19_02886 0.72 -1.1 137,225 - MPMX19_02886 0.72 -0.5 137,225 - MPMX19_02886 0.72 +0.8 137,225 - MPMX19_02886 0.72 +1.2 137,225 - MPMX19_02886 0.72 +0.0 137,225 - MPMX19_02886 0.72 +0.4 137,225 - MPMX19_02886 0.72 +0.5 137,225 - MPMX19_02886 0.72 -1.2 137,225 - MPMX19_02886 0.72 -1.0 137,225 - MPMX19_02886 0.72 -0.9 137,225 - MPMX19_02886 0.72 -0.6 137,225 - MPMX19_02886 0.72 -0.1 137,521 + -0.5 137,521 + +0.3 137,521 + +1.5 137,521 + -0.1 137,521 + +0.9 137,521 + -0.9 137,522 - -0.7 137,522 - -2.4 137,522 - -1.1 137,522 - -2.9 137,522 - +0.4 137,522 - -1.4 137,522 - -0.3 137,522 - -0.4 137,522 - -0.6 137,522 - -0.1 137,522 - -0.3 137,523 + -0.8 137,523 + -0.6 137,523 + -0.4 137,523 + -0.9 137,524 - -0.6 137,524 - -0.5 137,524 - -1.1 137,524 - -1.7 137,527 - -0.2 137,527 - -0.1 137,527 - -0.5 137,569 + +0.5 137,575 - +2.1 137,877 + MPMX19_02887 0.15 +0.4 137,877 + MPMX19_02887 0.15 -0.1 137,877 + MPMX19_02887 0.15 -0.9 137,877 + MPMX19_02887 0.15 +0.3 137,877 + MPMX19_02887 0.15 -0.7 137,877 + MPMX19_02887 0.15 +1.6 137,878 - MPMX19_02887 0.15 -0.9 137,878 - MPMX19_02887 0.15 +0.7 137,878 - MPMX19_02887 0.15 -1.4 137,878 - MPMX19_02887 0.15 -0.5 137,878 - MPMX19_02887 0.15 -0.1 137,878 - MPMX19_02887 0.15 +0.3 137,896 - MPMX19_02887 0.17 -1.4 137,896 - MPMX19_02887 0.17 +0.2 137,896 - MPMX19_02887 0.17 +1.4 137,907 + MPMX19_02887 0.17 -1.9 137,908 - MPMX19_02887 0.17 -0.4 137,908 - MPMX19_02887 0.17 +0.8 137,997 + MPMX19_02887 0.22 -0.7 138,054 + MPMX19_02887 0.26 -0.6 138,054 + MPMX19_02887 0.26 +0.6 138,054 + MPMX19_02887 0.26 -0.1 138,054 + MPMX19_02887 0.26 -0.1 138,054 + MPMX19_02887 0.26 -0.3 138,054 + MPMX19_02887 0.26 +0.4 138,054 + MPMX19_02887 0.26 -0.1 138,054 + MPMX19_02887 0.26 -0.9 138,054 + MPMX19_02887 0.26 +0.3 138,054 + MPMX19_02887 0.26 +0.8 138,054 + MPMX19_02887 0.26 -1.5 138,054 + MPMX19_02887 0.26 -0.2 138,054 + MPMX19_02887 0.26 -2.6 138,054 + MPMX19_02887 0.26 +0.4 138,054 + MPMX19_02887 0.26 +0.9 138,055 - MPMX19_02887 0.26 -1.1 138,055 - MPMX19_02887 0.26 -0.5 138,055 - MPMX19_02887 0.26 -0.0 138,055 - MPMX19_02887 0.26 +0.2 138,055 - MPMX19_02887 0.26 -1.5 138,055 - MPMX19_02887 0.26 -0.7 138,055 - MPMX19_02887 0.26 -0.5 138,055 - MPMX19_02887 0.26 +0.5 138,055 - MPMX19_02887 0.26 -0.7 138,055 - MPMX19_02887 0.26 +0.2 138,055 - MPMX19_02887 0.26 -0.6 138,055 - MPMX19_02887 0.26 -1.1 138,102 + MPMX19_02887 0.29 -1.5 138,102 + MPMX19_02887 0.29 -1.1 138,102 + MPMX19_02887 0.29 -1.3 138,102 + MPMX19_02887 0.29 +1.1 138,102 + MPMX19_02887 0.29 +0.0 138,102 + MPMX19_02887 0.29 +0.0 138,102 + MPMX19_02887 0.29 +0.5 138,102 + MPMX19_02887 0.29 -1.4 138,102 + MPMX19_02887 0.29 -1.6 138,102 + MPMX19_02887 0.29 -2.2 138,102 + MPMX19_02887 0.29 -1.1 138,102 + MPMX19_02887 0.29 +0.5 138,103 - MPMX19_02887 0.29 -1.4 138,103 - MPMX19_02887 0.29 -2.5 138,103 - MPMX19_02887 0.29 -1.5 138,103 - MPMX19_02887 0.29 -1.0 138,103 - MPMX19_02887 0.29 +0.3 138,103 - MPMX19_02887 0.29 -0.4 138,115 - MPMX19_02887 0.29 -0.3 138,150 + MPMX19_02887 0.32 -1.8 138,151 - MPMX19_02887 0.32 -1.1 138,151 - MPMX19_02887 0.32 -1.7 138,175 - MPMX19_02887 0.33 -0.8 138,232 + MPMX19_02887 0.36 -1.2 138,232 + MPMX19_02887 0.36 -0.5 138,233 - MPMX19_02887 0.36 +0.3 138,233 - MPMX19_02887 0.36 -1.1 139,334 - -1.4 139,334 - +0.5 139,336 - +1.4 139,336 - -0.8 139,336 - -0.8 139,336 - -1.4 139,336 - -0.1 139,336 - -1.0 139,336 - +0.9 139,336 - +1.2 139,336 - +1.1 139,492 + -1.9 139,588 + -0.1 139,589 - +0.2 139,762 + MPMX19_02888 0.24 -2.5 139,762 + MPMX19_02888 0.24 -1.1 139,762 + MPMX19_02888 0.24 +1.3 139,762 + MPMX19_02888 0.24 +0.9 139,763 - MPMX19_02888 0.24 -0.5 139,763 - MPMX19_02888 0.24 -3.3 139,763 - MPMX19_02888 0.24 -0.2 139,763 - MPMX19_02888 0.24 +0.1 139,763 - MPMX19_02888 0.24 -0.2 139,763 - MPMX19_02888 0.24 -0.1 139,763 - MPMX19_02888 0.24 +0.3 139,879 + MPMX19_02888 0.35 -1.4 139,921 + MPMX19_02888 0.39 -0.7 139,921 + MPMX19_02888 0.39 -0.5 139,921 + MPMX19_02888 0.39 -0.4 139,921 + MPMX19_02888 0.39 +0.5 139,921 + MPMX19_02888 0.39 -1.0 139,921 + MPMX19_02888 0.39 -1.5 139,921 + MPMX19_02888 0.39 -0.5 139,922 - MPMX19_02888 0.39 -1.2 139,922 - MPMX19_02888 0.39 +0.0 139,922 - MPMX19_02888 0.39 +0.3 139,922 - MPMX19_02888 0.39 -0.2 139,922 - MPMX19_02888 0.39 +0.1 140,198 - MPMX19_02888 0.64 -1.1 140,198 - MPMX19_02888 0.64 -1.1 140,215 + MPMX19_02888 0.65 +0.6 140,215 + MPMX19_02888 0.65 +0.3 140,215 + MPMX19_02888 0.65 -0.1 140,215 + MPMX19_02888 0.65 -0.0 140,215 + MPMX19_02888 0.65 +0.5 140,215 + MPMX19_02888 0.65 -1.9 140,215 + MPMX19_02888 0.65 -0.9 140,215 + MPMX19_02888 0.65 +0.5 140,215 + MPMX19_02888 0.65 +1.1 140,215 + MPMX19_02888 0.65 +0.1 140,215 + MPMX19_02888 0.65 -2.7 140,216 - MPMX19_02888 0.66 -1.5 140,216 - MPMX19_02888 0.66 -1.5 140,216 - MPMX19_02888 0.66 -0.2 140,216 - MPMX19_02888 0.66 -0.9 140,216 - MPMX19_02888 0.66 -0.9 140,216 - MPMX19_02888 0.66 -0.7 140,216 - MPMX19_02888 0.66 -0.9
Or see this region's nucleotide sequence