Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02886

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02885 and MPMX19_02886 are separated by 322 nucleotidesMPMX19_02886 and MPMX19_02887 are separated by 131 nucleotides MPMX19_02885: MPMX19_02885 - Citrate transporter, at 134,883 to 136,229 _02885 MPMX19_02886: MPMX19_02886 - HTH-type transcriptional regulator CynR, at 136,552 to 137,484 _02886 MPMX19_02887: MPMX19_02887 - Methyl-accepting chemotaxis protein, at 137,616 to 139,310 _02887 Position (kb) 136 137 138Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 135.644 kb on + strand, within MPMX19_02885at 135.844 kb on + strand, within MPMX19_02885at 135.844 kb on + strand, within MPMX19_02885at 135.844 kb on + strand, within MPMX19_02885at 135.844 kb on + strand, within MPMX19_02885at 135.844 kb on + strand, within MPMX19_02885at 135.845 kb on - strand, within MPMX19_02885at 135.845 kb on - strand, within MPMX19_02885at 136.046 kb on + strand, within MPMX19_02885at 136.046 kb on + strand, within MPMX19_02885at 136.047 kb on - strand, within MPMX19_02885at 136.047 kb on - strand, within MPMX19_02885at 136.047 kb on - strand, within MPMX19_02885at 136.047 kb on - strand, within MPMX19_02885at 136.231 kb on + strandat 136.231 kb on + strandat 136.231 kb on + strandat 136.231 kb on + strandat 136.231 kb on + strandat 136.231 kb on + strandat 136.231 kb on + strandat 136.232 kb on - strandat 136.232 kb on - strandat 136.232 kb on - strandat 136.232 kb on - strandat 136.232 kb on - strandat 136.232 kb on - strandat 136.254 kb on - strandat 136.422 kb on + strandat 136.477 kb on + strandat 136.478 kb on - strandat 136.478 kb on - strandat 136.515 kb on + strandat 136.516 kb on - strandat 136.516 kb on - strandat 136.516 kb on - strandat 136.534 kb on + strandat 136.539 kb on + strandat 136.539 kb on + strandat 136.572 kb on + strandat 136.572 kb on + strandat 136.573 kb on - strandat 136.573 kb on - strandat 136.573 kb on - strandat 136.573 kb on - strandat 136.573 kb on - strandat 136.573 kb on - strandat 136.573 kb on - strandat 136.573 kb on - strandat 136.573 kb on - strandat 136.573 kb on - strandat 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.521 kb on + strandat 137.521 kb on + strandat 137.521 kb on + strandat 137.521 kb on + strandat 137.521 kb on + strandat 137.521 kb on + strandat 137.522 kb on - strandat 137.522 kb on - strandat 137.522 kb on - strandat 137.522 kb on - strandat 137.522 kb on - strandat 137.522 kb on - strandat 137.522 kb on - strandat 137.522 kb on - strandat 137.522 kb on - strandat 137.522 kb on - strandat 137.522 kb on - strandat 137.523 kb on + strandat 137.523 kb on + strandat 137.523 kb on + strandat 137.523 kb on + strandat 137.524 kb on - strandat 137.524 kb on - strandat 137.524 kb on - strandat 137.524 kb on - strandat 137.527 kb on - strandat 137.527 kb on - strandat 137.527 kb on - strandat 137.569 kb on + strandat 137.575 kb on - strandat 137.877 kb on + strand, within MPMX19_02887at 137.877 kb on + strand, within MPMX19_02887at 137.877 kb on + strand, within MPMX19_02887at 137.877 kb on + strand, within MPMX19_02887at 137.877 kb on + strand, within MPMX19_02887at 137.877 kb on + strand, within MPMX19_02887at 137.878 kb on - strand, within MPMX19_02887at 137.878 kb on - strand, within MPMX19_02887at 137.878 kb on - strand, within MPMX19_02887at 137.878 kb on - strand, within MPMX19_02887at 137.878 kb on - strand, within MPMX19_02887at 137.878 kb on - strand, within MPMX19_02887at 137.896 kb on - strand, within MPMX19_02887at 137.896 kb on - strand, within MPMX19_02887at 137.896 kb on - strand, within MPMX19_02887at 137.907 kb on + strand, within MPMX19_02887at 137.908 kb on - strand, within MPMX19_02887at 137.908 kb on - strand, within MPMX19_02887at 137.997 kb on + strand, within MPMX19_02887at 138.054 kb on + strand, within MPMX19_02887at 138.054 kb on + strand, within MPMX19_02887at 138.054 kb on + strand, within MPMX19_02887at 138.054 kb on + strand, within MPMX19_02887at 138.054 kb on + strand, within MPMX19_02887at 138.054 kb on + strand, within MPMX19_02887at 138.054 kb on + strand, within MPMX19_02887at 138.054 kb on + strand, within MPMX19_02887at 138.054 kb on + strand, within MPMX19_02887at 138.054 kb on + strand, within MPMX19_02887at 138.054 kb on + strand, within MPMX19_02887at 138.054 kb on + strand, within MPMX19_02887at 138.054 kb on + strand, within MPMX19_02887at 138.054 kb on + strand, within MPMX19_02887at 138.054 kb on + strand, within MPMX19_02887at 138.055 kb on - strand, within MPMX19_02887at 138.055 kb on - strand, within MPMX19_02887at 138.055 kb on - strand, within MPMX19_02887at 138.055 kb on - strand, within MPMX19_02887at 138.055 kb on - strand, within MPMX19_02887at 138.055 kb on - strand, within MPMX19_02887at 138.055 kb on - strand, within MPMX19_02887at 138.055 kb on - strand, within MPMX19_02887at 138.055 kb on - strand, within MPMX19_02887at 138.055 kb on - strand, within MPMX19_02887at 138.055 kb on - strand, within MPMX19_02887at 138.055 kb on - strand, within MPMX19_02887at 138.102 kb on + strand, within MPMX19_02887at 138.102 kb on + strand, within MPMX19_02887at 138.102 kb on + strand, within MPMX19_02887at 138.102 kb on + strand, within MPMX19_02887at 138.102 kb on + strand, within MPMX19_02887at 138.102 kb on + strand, within MPMX19_02887at 138.102 kb on + strand, within MPMX19_02887at 138.102 kb on + strand, within MPMX19_02887at 138.102 kb on + strand, within MPMX19_02887at 138.102 kb on + strand, within MPMX19_02887at 138.102 kb on + strand, within MPMX19_02887at 138.102 kb on + strand, within MPMX19_02887at 138.103 kb on - strand, within MPMX19_02887at 138.103 kb on - strand, within MPMX19_02887at 138.103 kb on - strand, within MPMX19_02887at 138.103 kb on - strand, within MPMX19_02887at 138.103 kb on - strand, within MPMX19_02887at 138.103 kb on - strand, within MPMX19_02887at 138.115 kb on - strand, within MPMX19_02887at 138.150 kb on + strand, within MPMX19_02887at 138.151 kb on - strand, within MPMX19_02887at 138.151 kb on - strand, within MPMX19_02887at 138.175 kb on - strand, within MPMX19_02887at 138.232 kb on + strand, within MPMX19_02887at 138.232 kb on + strand, within MPMX19_02887at 138.233 kb on - strand, within MPMX19_02887at 138.233 kb on - strand, within MPMX19_02887

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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135,644 + MPMX19_02885 0.56 -2.2
135,844 + MPMX19_02885 0.71 -0.7
135,844 + MPMX19_02885 0.71 -1.5
135,844 + MPMX19_02885 0.71 -0.5
135,844 + MPMX19_02885 0.71 -0.9
135,844 + MPMX19_02885 0.71 +2.1
135,845 - MPMX19_02885 0.71 -0.3
135,845 - MPMX19_02885 0.71 -1.1
136,046 + MPMX19_02885 0.86 +0.5
136,046 + MPMX19_02885 0.86 +0.6
136,047 - MPMX19_02885 0.86 -0.1
136,047 - MPMX19_02885 0.86 -0.3
136,047 - MPMX19_02885 0.86 -0.2
136,047 - MPMX19_02885 0.86 +0.5
136,231 + -0.2
136,231 + -1.1
136,231 + +1.5
136,231 + -1.2
136,231 + -0.1
136,231 + +0.3
136,231 + -0.1
136,232 - -2.0
136,232 - -1.2
136,232 - -0.7
136,232 - +0.5
136,232 - -0.2
136,232 - -0.2
136,254 - -0.8
136,422 + +1.5
136,477 + -1.5
136,478 - -1.4
136,478 - -0.2
136,515 + +0.5
136,516 - +1.1
136,516 - +0.3
136,516 - +0.1
136,534 + -0.4
136,539 + -1.8
136,539 + -1.2
136,572 + -0.9
136,572 + +0.4
136,573 - -0.9
136,573 - -1.0
136,573 - +0.3
136,573 - +0.1
136,573 - +0.9
136,573 - +1.0
136,573 - -0.1
136,573 - -0.0
136,573 - +1.4
136,573 - -0.9
137,224 + MPMX19_02886 0.72 +0.6
137,224 + MPMX19_02886 0.72 -0.0
137,224 + MPMX19_02886 0.72 -1.2
137,224 + MPMX19_02886 0.72 +0.0
137,224 + MPMX19_02886 0.72 -0.1
137,224 + MPMX19_02886 0.72 +0.0
137,224 + MPMX19_02886 0.72 +0.5
137,224 + MPMX19_02886 0.72 -0.7
137,224 + MPMX19_02886 0.72 -0.0
137,224 + MPMX19_02886 0.72 -2.4
137,224 + MPMX19_02886 0.72 +0.9
137,224 + MPMX19_02886 0.72 +0.1
137,224 + MPMX19_02886 0.72 -0.5
137,224 + MPMX19_02886 0.72 +0.2
137,224 + MPMX19_02886 0.72 +0.2
137,224 + MPMX19_02886 0.72 -0.6
137,224 + MPMX19_02886 0.72 +0.1
137,224 + MPMX19_02886 0.72 -1.2
137,224 + MPMX19_02886 0.72 -0.1
137,224 + MPMX19_02886 0.72 -1.2
137,224 + MPMX19_02886 0.72 +1.1
137,224 + MPMX19_02886 0.72 -1.6
137,224 + MPMX19_02886 0.72 -0.0
137,225 - MPMX19_02886 0.72 -1.1
137,225 - MPMX19_02886 0.72 -1.8
137,225 - MPMX19_02886 0.72 -1.1
137,225 - MPMX19_02886 0.72 -0.4
137,225 - MPMX19_02886 0.72 -0.9
137,225 - MPMX19_02886 0.72 -1.1
137,225 - MPMX19_02886 0.72 -0.5
137,225 - MPMX19_02886 0.72 +0.8
137,225 - MPMX19_02886 0.72 +1.2
137,225 - MPMX19_02886 0.72 +0.0
137,225 - MPMX19_02886 0.72 +0.4
137,225 - MPMX19_02886 0.72 +0.5
137,225 - MPMX19_02886 0.72 -1.2
137,225 - MPMX19_02886 0.72 -1.0
137,225 - MPMX19_02886 0.72 -0.9
137,225 - MPMX19_02886 0.72 -0.6
137,225 - MPMX19_02886 0.72 -0.1
137,521 + -0.5
137,521 + +0.3
137,521 + +1.5
137,521 + -0.1
137,521 + +0.9
137,521 + -0.9
137,522 - -0.7
137,522 - -2.4
137,522 - -1.1
137,522 - -2.9
137,522 - +0.4
137,522 - -1.4
137,522 - -0.3
137,522 - -0.4
137,522 - -0.6
137,522 - -0.1
137,522 - -0.3
137,523 + -0.8
137,523 + -0.6
137,523 + -0.4
137,523 + -0.9
137,524 - -0.6
137,524 - -0.5
137,524 - -1.1
137,524 - -1.7
137,527 - -0.2
137,527 - -0.1
137,527 - -0.5
137,569 + +0.5
137,575 - +2.1
137,877 + MPMX19_02887 0.15 +0.4
137,877 + MPMX19_02887 0.15 -0.1
137,877 + MPMX19_02887 0.15 -0.9
137,877 + MPMX19_02887 0.15 +0.3
137,877 + MPMX19_02887 0.15 -0.7
137,877 + MPMX19_02887 0.15 +1.6
137,878 - MPMX19_02887 0.15 -0.9
137,878 - MPMX19_02887 0.15 +0.7
137,878 - MPMX19_02887 0.15 -1.4
137,878 - MPMX19_02887 0.15 -0.5
137,878 - MPMX19_02887 0.15 -0.1
137,878 - MPMX19_02887 0.15 +0.3
137,896 - MPMX19_02887 0.17 -1.4
137,896 - MPMX19_02887 0.17 +0.2
137,896 - MPMX19_02887 0.17 +1.4
137,907 + MPMX19_02887 0.17 -1.9
137,908 - MPMX19_02887 0.17 -0.4
137,908 - MPMX19_02887 0.17 +0.8
137,997 + MPMX19_02887 0.22 -0.7
138,054 + MPMX19_02887 0.26 -0.6
138,054 + MPMX19_02887 0.26 +0.6
138,054 + MPMX19_02887 0.26 -0.1
138,054 + MPMX19_02887 0.26 -0.1
138,054 + MPMX19_02887 0.26 -0.3
138,054 + MPMX19_02887 0.26 +0.4
138,054 + MPMX19_02887 0.26 -0.1
138,054 + MPMX19_02887 0.26 -0.9
138,054 + MPMX19_02887 0.26 +0.3
138,054 + MPMX19_02887 0.26 +0.8
138,054 + MPMX19_02887 0.26 -1.5
138,054 + MPMX19_02887 0.26 -0.2
138,054 + MPMX19_02887 0.26 -2.6
138,054 + MPMX19_02887 0.26 +0.4
138,054 + MPMX19_02887 0.26 +0.9
138,055 - MPMX19_02887 0.26 -1.1
138,055 - MPMX19_02887 0.26 -0.5
138,055 - MPMX19_02887 0.26 -0.0
138,055 - MPMX19_02887 0.26 +0.2
138,055 - MPMX19_02887 0.26 -1.5
138,055 - MPMX19_02887 0.26 -0.7
138,055 - MPMX19_02887 0.26 -0.5
138,055 - MPMX19_02887 0.26 +0.5
138,055 - MPMX19_02887 0.26 -0.7
138,055 - MPMX19_02887 0.26 +0.2
138,055 - MPMX19_02887 0.26 -0.6
138,055 - MPMX19_02887 0.26 -1.1
138,102 + MPMX19_02887 0.29 -1.5
138,102 + MPMX19_02887 0.29 -1.1
138,102 + MPMX19_02887 0.29 -1.3
138,102 + MPMX19_02887 0.29 +1.1
138,102 + MPMX19_02887 0.29 +0.0
138,102 + MPMX19_02887 0.29 +0.0
138,102 + MPMX19_02887 0.29 +0.5
138,102 + MPMX19_02887 0.29 -1.4
138,102 + MPMX19_02887 0.29 -1.6
138,102 + MPMX19_02887 0.29 -2.2
138,102 + MPMX19_02887 0.29 -1.1
138,102 + MPMX19_02887 0.29 +0.5
138,103 - MPMX19_02887 0.29 -1.4
138,103 - MPMX19_02887 0.29 -2.5
138,103 - MPMX19_02887 0.29 -1.5
138,103 - MPMX19_02887 0.29 -1.0
138,103 - MPMX19_02887 0.29 +0.3
138,103 - MPMX19_02887 0.29 -0.4
138,115 - MPMX19_02887 0.29 -0.3
138,150 + MPMX19_02887 0.32 -1.8
138,151 - MPMX19_02887 0.32 -1.1
138,151 - MPMX19_02887 0.32 -1.7
138,175 - MPMX19_02887 0.33 -0.8
138,232 + MPMX19_02887 0.36 -1.2
138,232 + MPMX19_02887 0.36 -0.5
138,233 - MPMX19_02887 0.36 +0.3
138,233 - MPMX19_02887 0.36 -1.1

Or see this region's nucleotide sequence