Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02885

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02884 and MPMX19_02885 are separated by 37 nucleotidesMPMX19_02885 and MPMX19_02886 are separated by 322 nucleotides MPMX19_02884: MPMX19_02884 - hypothetical protein, at 133,502 to 134,845 _02884 MPMX19_02885: MPMX19_02885 - Citrate transporter, at 134,883 to 136,229 _02885 MPMX19_02886: MPMX19_02886 - HTH-type transcriptional regulator CynR, at 136,552 to 137,484 _02886 Position (kb) 134 135 136 137Strain fitness (log2 ratio) -2 -1 0 1 2at 133.902 kb on + strand, within MPMX19_02884at 133.903 kb on - strand, within MPMX19_02884at 133.903 kb on - strand, within MPMX19_02884at 134.028 kb on + strand, within MPMX19_02884at 134.028 kb on + strand, within MPMX19_02884at 134.053 kb on - strand, within MPMX19_02884at 134.053 kb on - strand, within MPMX19_02884at 134.206 kb on - strand, within MPMX19_02884at 134.403 kb on + strand, within MPMX19_02884at 134.403 kb on + strand, within MPMX19_02884at 134.404 kb on - strand, within MPMX19_02884at 134.404 kb on - strand, within MPMX19_02884at 134.605 kb on + strand, within MPMX19_02884at 134.606 kb on - strand, within MPMX19_02884at 134.676 kb on + strand, within MPMX19_02884at 134.676 kb on + strand, within MPMX19_02884at 134.676 kb on + strand, within MPMX19_02884at 134.677 kb on - strand, within MPMX19_02884at 134.677 kb on - strand, within MPMX19_02884at 134.677 kb on - strand, within MPMX19_02884at 134.677 kb on - strand, within MPMX19_02884at 134.754 kb on + strandat 134.754 kb on + strandat 134.754 kb on + strandat 134.754 kb on + strandat 134.755 kb on - strandat 134.755 kb on - strandat 134.755 kb on - strandat 134.755 kb on - strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.852 kb on - strandat 134.852 kb on - strandat 134.852 kb on - strandat 134.852 kb on - strandat 134.852 kb on - strandat 134.852 kb on - strandat 134.852 kb on - strandat 134.947 kb on + strandat 134.947 kb on + strandat 134.948 kb on - strandat 134.948 kb on - strandat 134.948 kb on - strandat 135.104 kb on + strand, within MPMX19_02885at 135.104 kb on + strand, within MPMX19_02885at 135.104 kb on + strand, within MPMX19_02885at 135.104 kb on + strand, within MPMX19_02885at 135.104 kb on + strand, within MPMX19_02885at 135.104 kb on + strand, within MPMX19_02885at 135.104 kb on + strand, within MPMX19_02885at 135.105 kb on - strand, within MPMX19_02885at 135.105 kb on - strand, within MPMX19_02885at 135.105 kb on - strand, within MPMX19_02885at 135.105 kb on - strand, within MPMX19_02885at 135.105 kb on - strand, within MPMX19_02885at 135.106 kb on + strand, within MPMX19_02885at 135.106 kb on + strand, within MPMX19_02885at 135.106 kb on + strand, within MPMX19_02885at 135.106 kb on + strand, within MPMX19_02885at 135.106 kb on + strand, within MPMX19_02885at 135.106 kb on + strand, within MPMX19_02885at 135.107 kb on - strand, within MPMX19_02885at 135.107 kb on - strand, within MPMX19_02885at 135.107 kb on - strand, within MPMX19_02885at 135.107 kb on - strand, within MPMX19_02885at 135.107 kb on - strand, within MPMX19_02885at 135.139 kb on + strand, within MPMX19_02885at 135.139 kb on + strand, within MPMX19_02885at 135.139 kb on + strand, within MPMX19_02885at 135.140 kb on - strand, within MPMX19_02885at 135.140 kb on - strand, within MPMX19_02885at 135.140 kb on - strand, within MPMX19_02885at 135.140 kb on - strand, within MPMX19_02885at 135.142 kb on + strand, within MPMX19_02885at 135.143 kb on - strand, within MPMX19_02885at 135.143 kb on - strand, within MPMX19_02885at 135.143 kb on - strand, within MPMX19_02885at 135.143 kb on - strand, within MPMX19_02885at 135.379 kb on + strand, within MPMX19_02885at 135.379 kb on + strand, within MPMX19_02885at 135.379 kb on + strand, within MPMX19_02885at 135.379 kb on + strand, within MPMX19_02885at 135.380 kb on - strand, within MPMX19_02885at 135.380 kb on - strand, within MPMX19_02885at 135.380 kb on - strand, within MPMX19_02885at 135.644 kb on + strand, within MPMX19_02885at 135.844 kb on + strand, within MPMX19_02885at 135.844 kb on + strand, within MPMX19_02885at 135.844 kb on + strand, within MPMX19_02885at 135.844 kb on + strand, within MPMX19_02885at 135.844 kb on + strand, within MPMX19_02885at 135.845 kb on - strand, within MPMX19_02885at 135.845 kb on - strand, within MPMX19_02885at 136.046 kb on + strand, within MPMX19_02885at 136.046 kb on + strand, within MPMX19_02885at 136.047 kb on - strand, within MPMX19_02885at 136.047 kb on - strand, within MPMX19_02885at 136.047 kb on - strand, within MPMX19_02885at 136.047 kb on - strand, within MPMX19_02885at 136.231 kb on + strandat 136.231 kb on + strandat 136.231 kb on + strandat 136.231 kb on + strandat 136.231 kb on + strandat 136.231 kb on + strandat 136.231 kb on + strandat 136.232 kb on - strandat 136.232 kb on - strandat 136.232 kb on - strandat 136.232 kb on - strandat 136.232 kb on - strandat 136.232 kb on - strandat 136.254 kb on - strandat 136.422 kb on + strandat 136.477 kb on + strandat 136.478 kb on - strandat 136.478 kb on - strandat 136.515 kb on + strandat 136.516 kb on - strandat 136.516 kb on - strandat 136.516 kb on - strandat 136.534 kb on + strandat 136.539 kb on + strandat 136.539 kb on + strandat 136.572 kb on + strandat 136.572 kb on + strandat 136.573 kb on - strandat 136.573 kb on - strandat 136.573 kb on - strandat 136.573 kb on - strandat 136.573 kb on - strandat 136.573 kb on - strandat 136.573 kb on - strandat 136.573 kb on - strandat 136.573 kb on - strandat 136.573 kb on - strandat 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.224 kb on + strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886at 137.225 kb on - strand, within MPMX19_02886

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
133,902 + MPMX19_02884 0.30 -1.2
133,903 - MPMX19_02884 0.30 +1.1
133,903 - MPMX19_02884 0.30 -0.1
134,028 + MPMX19_02884 0.39 -1.4
134,028 + MPMX19_02884 0.39 +1.1
134,053 - MPMX19_02884 0.41 +0.0
134,053 - MPMX19_02884 0.41 -0.2
134,206 - MPMX19_02884 0.52 -1.1
134,403 + MPMX19_02884 0.67 -0.6
134,403 + MPMX19_02884 0.67 -0.4
134,404 - MPMX19_02884 0.67 -0.7
134,404 - MPMX19_02884 0.67 +0.8
134,605 + MPMX19_02884 0.82 -0.5
134,606 - MPMX19_02884 0.82 -0.8
134,676 + MPMX19_02884 0.87 +0.0
134,676 + MPMX19_02884 0.87 +0.3
134,676 + MPMX19_02884 0.87 -0.0
134,677 - MPMX19_02884 0.87 -0.6
134,677 - MPMX19_02884 0.87 -1.1
134,677 - MPMX19_02884 0.87 -0.3
134,677 - MPMX19_02884 0.87 +0.4
134,754 + +1.1
134,754 + -0.8
134,754 + -2.4
134,754 + -1.4
134,755 - -0.7
134,755 - +0.1
134,755 - -0.1
134,755 - -0.4
134,851 + -0.6
134,851 + -0.7
134,851 + -1.1
134,851 + +0.4
134,851 + +0.1
134,851 + +0.2
134,851 + -1.1
134,851 + +0.1
134,851 + -2.5
134,851 + -1.7
134,851 + -0.9
134,851 + +1.4
134,851 + -1.9
134,852 - -1.5
134,852 - +0.2
134,852 - +0.0
134,852 - +0.7
134,852 - -0.4
134,852 - -1.5
134,852 - +0.0
134,947 + +2.1
134,947 + -2.1
134,948 - +0.3
134,948 - +0.1
134,948 - -2.5
135,104 + MPMX19_02885 0.16 +1.5
135,104 + MPMX19_02885 0.16 +0.2
135,104 + MPMX19_02885 0.16 -0.7
135,104 + MPMX19_02885 0.16 -0.7
135,104 + MPMX19_02885 0.16 -0.9
135,104 + MPMX19_02885 0.16 -0.6
135,104 + MPMX19_02885 0.16 +0.7
135,105 - MPMX19_02885 0.16 -0.1
135,105 - MPMX19_02885 0.16 +0.4
135,105 - MPMX19_02885 0.16 +0.4
135,105 - MPMX19_02885 0.16 -0.3
135,105 - MPMX19_02885 0.16 -2.3
135,106 + MPMX19_02885 0.17 -1.1
135,106 + MPMX19_02885 0.17 +0.2
135,106 + MPMX19_02885 0.17 +0.3
135,106 + MPMX19_02885 0.17 -0.2
135,106 + MPMX19_02885 0.17 -2.0
135,106 + MPMX19_02885 0.17 +0.7
135,107 - MPMX19_02885 0.17 -0.4
135,107 - MPMX19_02885 0.17 +0.5
135,107 - MPMX19_02885 0.17 -0.3
135,107 - MPMX19_02885 0.17 +0.6
135,107 - MPMX19_02885 0.17 +1.4
135,139 + MPMX19_02885 0.19 -2.2
135,139 + MPMX19_02885 0.19 -0.7
135,139 + MPMX19_02885 0.19 +0.5
135,140 - MPMX19_02885 0.19 -0.5
135,140 - MPMX19_02885 0.19 -1.1
135,140 - MPMX19_02885 0.19 +0.2
135,140 - MPMX19_02885 0.19 -1.4
135,142 + MPMX19_02885 0.19 -0.1
135,143 - MPMX19_02885 0.19 -0.7
135,143 - MPMX19_02885 0.19 -0.0
135,143 - MPMX19_02885 0.19 -0.9
135,143 - MPMX19_02885 0.19 -0.9
135,379 + MPMX19_02885 0.37 -1.4
135,379 + MPMX19_02885 0.37 -1.5
135,379 + MPMX19_02885 0.37 -0.9
135,379 + MPMX19_02885 0.37 +0.6
135,380 - MPMX19_02885 0.37 +0.9
135,380 - MPMX19_02885 0.37 +0.8
135,380 - MPMX19_02885 0.37 +0.1
135,644 + MPMX19_02885 0.56 -2.2
135,844 + MPMX19_02885 0.71 -0.7
135,844 + MPMX19_02885 0.71 -1.5
135,844 + MPMX19_02885 0.71 -0.5
135,844 + MPMX19_02885 0.71 -0.9
135,844 + MPMX19_02885 0.71 +2.1
135,845 - MPMX19_02885 0.71 -0.3
135,845 - MPMX19_02885 0.71 -1.1
136,046 + MPMX19_02885 0.86 +0.5
136,046 + MPMX19_02885 0.86 +0.6
136,047 - MPMX19_02885 0.86 -0.1
136,047 - MPMX19_02885 0.86 -0.3
136,047 - MPMX19_02885 0.86 -0.2
136,047 - MPMX19_02885 0.86 +0.5
136,231 + -0.2
136,231 + -1.1
136,231 + +1.5
136,231 + -1.2
136,231 + -0.1
136,231 + +0.3
136,231 + -0.1
136,232 - -2.0
136,232 - -1.2
136,232 - -0.7
136,232 - +0.5
136,232 - -0.2
136,232 - -0.2
136,254 - -0.8
136,422 + +1.5
136,477 + -1.5
136,478 - -1.4
136,478 - -0.2
136,515 + +0.5
136,516 - +1.1
136,516 - +0.3
136,516 - +0.1
136,534 + -0.4
136,539 + -1.8
136,539 + -1.2
136,572 + -0.9
136,572 + +0.4
136,573 - -0.9
136,573 - -1.0
136,573 - +0.3
136,573 - +0.1
136,573 - +0.9
136,573 - +1.0
136,573 - -0.1
136,573 - -0.0
136,573 - +1.4
136,573 - -0.9
137,224 + MPMX19_02886 0.72 +0.6
137,224 + MPMX19_02886 0.72 -0.0
137,224 + MPMX19_02886 0.72 -1.2
137,224 + MPMX19_02886 0.72 +0.0
137,224 + MPMX19_02886 0.72 -0.1
137,224 + MPMX19_02886 0.72 +0.0
137,224 + MPMX19_02886 0.72 +0.5
137,224 + MPMX19_02886 0.72 -0.7
137,224 + MPMX19_02886 0.72 -0.0
137,224 + MPMX19_02886 0.72 -2.4
137,224 + MPMX19_02886 0.72 +0.9
137,224 + MPMX19_02886 0.72 +0.1
137,224 + MPMX19_02886 0.72 -0.5
137,224 + MPMX19_02886 0.72 +0.2
137,224 + MPMX19_02886 0.72 +0.2
137,224 + MPMX19_02886 0.72 -0.6
137,224 + MPMX19_02886 0.72 +0.1
137,224 + MPMX19_02886 0.72 -1.2
137,224 + MPMX19_02886 0.72 -0.1
137,224 + MPMX19_02886 0.72 -1.2
137,224 + MPMX19_02886 0.72 +1.1
137,224 + MPMX19_02886 0.72 -1.6
137,224 + MPMX19_02886 0.72 -0.0
137,225 - MPMX19_02886 0.72 -1.1
137,225 - MPMX19_02886 0.72 -1.8
137,225 - MPMX19_02886 0.72 -1.1
137,225 - MPMX19_02886 0.72 -0.4
137,225 - MPMX19_02886 0.72 -0.9
137,225 - MPMX19_02886 0.72 -1.1
137,225 - MPMX19_02886 0.72 -0.5
137,225 - MPMX19_02886 0.72 +0.8
137,225 - MPMX19_02886 0.72 +1.2
137,225 - MPMX19_02886 0.72 +0.0
137,225 - MPMX19_02886 0.72 +0.4
137,225 - MPMX19_02886 0.72 +0.5
137,225 - MPMX19_02886 0.72 -1.2
137,225 - MPMX19_02886 0.72 -1.0
137,225 - MPMX19_02886 0.72 -0.9
137,225 - MPMX19_02886 0.72 -0.6
137,225 - MPMX19_02886 0.72 -0.1

Or see this region's nucleotide sequence