Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02884

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02882 and MPMX19_02883 are separated by 13 nucleotidesMPMX19_02883 and MPMX19_02884 are separated by 1 nucleotidesMPMX19_02884 and MPMX19_02885 are separated by 37 nucleotides MPMX19_02882: MPMX19_02882 - Threonine/homoserine exporter RhtA, at 132,267 to 133,157 _02882 MPMX19_02883: MPMX19_02883 - hypothetical protein, at 133,171 to 133,500 _02883 MPMX19_02884: MPMX19_02884 - hypothetical protein, at 133,502 to 134,845 _02884 MPMX19_02885: MPMX19_02885 - Citrate transporter, at 134,883 to 136,229 _02885 Position (kb) 133 134 135Strain fitness (log2 ratio) -2 -1 0 1 2at 132.516 kb on + strand, within MPMX19_02882at 132.516 kb on + strand, within MPMX19_02882at 132.516 kb on + strand, within MPMX19_02882at 132.516 kb on + strand, within MPMX19_02882at 132.516 kb on + strand, within MPMX19_02882at 132.517 kb on - strand, within MPMX19_02882at 132.553 kb on - strand, within MPMX19_02882at 132.741 kb on + strand, within MPMX19_02882at 132.741 kb on + strand, within MPMX19_02882at 132.741 kb on + strand, within MPMX19_02882at 132.742 kb on - strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.774 kb on + strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.775 kb on - strand, within MPMX19_02882at 132.776 kb on + strand, within MPMX19_02882at 132.777 kb on - strand, within MPMX19_02882at 132.777 kb on - strand, within MPMX19_02882at 132.777 kb on - strand, within MPMX19_02882at 132.777 kb on - strand, within MPMX19_02882at 132.954 kb on + strand, within MPMX19_02882at 132.954 kb on + strand, within MPMX19_02882at 132.955 kb on - strand, within MPMX19_02882at 132.955 kb on - strand, within MPMX19_02882at 133.155 kb on + strandat 133.172 kb on + strandat 133.172 kb on + strandat 133.172 kb on + strandat 133.172 kb on + strandat 133.172 kb on + strandat 133.173 kb on - strandat 133.173 kb on - strandat 133.173 kb on - strandat 133.173 kb on - strandat 133.412 kb on + strand, within MPMX19_02883at 133.514 kb on - strandat 133.623 kb on + strandat 133.623 kb on + strandat 133.624 kb on - strandat 133.624 kb on - strandat 133.704 kb on + strand, within MPMX19_02884at 133.704 kb on + strand, within MPMX19_02884at 133.704 kb on + strand, within MPMX19_02884at 133.704 kb on + strand, within MPMX19_02884at 133.705 kb on - strand, within MPMX19_02884at 133.705 kb on - strand, within MPMX19_02884at 133.705 kb on - strand, within MPMX19_02884at 133.705 kb on - strand, within MPMX19_02884at 133.705 kb on - strand, within MPMX19_02884at 133.705 kb on - strand, within MPMX19_02884at 133.866 kb on + strand, within MPMX19_02884at 133.866 kb on + strand, within MPMX19_02884at 133.866 kb on + strand, within MPMX19_02884at 133.866 kb on + strand, within MPMX19_02884at 133.866 kb on + strand, within MPMX19_02884at 133.867 kb on - strand, within MPMX19_02884at 133.867 kb on - strand, within MPMX19_02884at 133.867 kb on - strand, within MPMX19_02884at 133.867 kb on - strand, within MPMX19_02884at 133.867 kb on - strand, within MPMX19_02884at 133.902 kb on + strand, within MPMX19_02884at 133.903 kb on - strand, within MPMX19_02884at 133.903 kb on - strand, within MPMX19_02884at 134.028 kb on + strand, within MPMX19_02884at 134.028 kb on + strand, within MPMX19_02884at 134.053 kb on - strand, within MPMX19_02884at 134.053 kb on - strand, within MPMX19_02884at 134.206 kb on - strand, within MPMX19_02884at 134.403 kb on + strand, within MPMX19_02884at 134.403 kb on + strand, within MPMX19_02884at 134.404 kb on - strand, within MPMX19_02884at 134.404 kb on - strand, within MPMX19_02884at 134.605 kb on + strand, within MPMX19_02884at 134.606 kb on - strand, within MPMX19_02884at 134.676 kb on + strand, within MPMX19_02884at 134.676 kb on + strand, within MPMX19_02884at 134.676 kb on + strand, within MPMX19_02884at 134.677 kb on - strand, within MPMX19_02884at 134.677 kb on - strand, within MPMX19_02884at 134.677 kb on - strand, within MPMX19_02884at 134.677 kb on - strand, within MPMX19_02884at 134.754 kb on + strandat 134.754 kb on + strandat 134.754 kb on + strandat 134.754 kb on + strandat 134.755 kb on - strandat 134.755 kb on - strandat 134.755 kb on - strandat 134.755 kb on - strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.851 kb on + strandat 134.852 kb on - strandat 134.852 kb on - strandat 134.852 kb on - strandat 134.852 kb on - strandat 134.852 kb on - strandat 134.852 kb on - strandat 134.852 kb on - strandat 134.947 kb on + strandat 134.947 kb on + strandat 134.948 kb on - strandat 134.948 kb on - strandat 134.948 kb on - strandat 135.104 kb on + strand, within MPMX19_02885at 135.104 kb on + strand, within MPMX19_02885at 135.104 kb on + strand, within MPMX19_02885at 135.104 kb on + strand, within MPMX19_02885at 135.104 kb on + strand, within MPMX19_02885at 135.104 kb on + strand, within MPMX19_02885at 135.104 kb on + strand, within MPMX19_02885at 135.105 kb on - strand, within MPMX19_02885at 135.105 kb on - strand, within MPMX19_02885at 135.105 kb on - strand, within MPMX19_02885at 135.105 kb on - strand, within MPMX19_02885at 135.105 kb on - strand, within MPMX19_02885at 135.106 kb on + strand, within MPMX19_02885at 135.106 kb on + strand, within MPMX19_02885at 135.106 kb on + strand, within MPMX19_02885at 135.106 kb on + strand, within MPMX19_02885at 135.106 kb on + strand, within MPMX19_02885at 135.106 kb on + strand, within MPMX19_02885at 135.107 kb on - strand, within MPMX19_02885at 135.107 kb on - strand, within MPMX19_02885at 135.107 kb on - strand, within MPMX19_02885at 135.107 kb on - strand, within MPMX19_02885at 135.107 kb on - strand, within MPMX19_02885at 135.139 kb on + strand, within MPMX19_02885at 135.139 kb on + strand, within MPMX19_02885at 135.139 kb on + strand, within MPMX19_02885at 135.140 kb on - strand, within MPMX19_02885at 135.140 kb on - strand, within MPMX19_02885at 135.140 kb on - strand, within MPMX19_02885at 135.140 kb on - strand, within MPMX19_02885at 135.142 kb on + strand, within MPMX19_02885at 135.143 kb on - strand, within MPMX19_02885at 135.143 kb on - strand, within MPMX19_02885at 135.143 kb on - strand, within MPMX19_02885at 135.143 kb on - strand, within MPMX19_02885at 135.379 kb on + strand, within MPMX19_02885at 135.379 kb on + strand, within MPMX19_02885at 135.379 kb on + strand, within MPMX19_02885at 135.379 kb on + strand, within MPMX19_02885at 135.380 kb on - strand, within MPMX19_02885at 135.380 kb on - strand, within MPMX19_02885at 135.380 kb on - strand, within MPMX19_02885at 135.644 kb on + strand, within MPMX19_02885at 135.844 kb on + strand, within MPMX19_02885at 135.844 kb on + strand, within MPMX19_02885at 135.844 kb on + strand, within MPMX19_02885at 135.844 kb on + strand, within MPMX19_02885at 135.844 kb on + strand, within MPMX19_02885at 135.845 kb on - strand, within MPMX19_02885at 135.845 kb on - strand, within MPMX19_02885

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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132,516 + MPMX19_02882 0.28 -0.4
132,516 + MPMX19_02882 0.28 +0.9
132,516 + MPMX19_02882 0.28 +1.1
132,516 + MPMX19_02882 0.28 -0.1
132,516 + MPMX19_02882 0.28 -0.1
132,517 - MPMX19_02882 0.28 -0.2
132,553 - MPMX19_02882 0.32 +0.2
132,741 + MPMX19_02882 0.53 -0.4
132,741 + MPMX19_02882 0.53 -1.4
132,741 + MPMX19_02882 0.53 -0.2
132,742 - MPMX19_02882 0.53 +1.4
132,774 + MPMX19_02882 0.57 +0.0
132,774 + MPMX19_02882 0.57 -0.9
132,774 + MPMX19_02882 0.57 -1.2
132,774 + MPMX19_02882 0.57 -0.5
132,774 + MPMX19_02882 0.57 -0.8
132,774 + MPMX19_02882 0.57 -1.2
132,774 + MPMX19_02882 0.57 -2.2
132,774 + MPMX19_02882 0.57 -1.3
132,774 + MPMX19_02882 0.57 -1.5
132,775 - MPMX19_02882 0.57 +0.7
132,775 - MPMX19_02882 0.57 -1.0
132,775 - MPMX19_02882 0.57 -0.4
132,775 - MPMX19_02882 0.57 -1.5
132,775 - MPMX19_02882 0.57 -1.0
132,775 - MPMX19_02882 0.57 +0.6
132,775 - MPMX19_02882 0.57 +0.1
132,775 - MPMX19_02882 0.57 -0.4
132,775 - MPMX19_02882 0.57 +0.1
132,775 - MPMX19_02882 0.57 +0.2
132,775 - MPMX19_02882 0.57 -1.3
132,776 + MPMX19_02882 0.57 -0.4
132,777 - MPMX19_02882 0.57 +1.5
132,777 - MPMX19_02882 0.57 +0.7
132,777 - MPMX19_02882 0.57 -0.8
132,777 - MPMX19_02882 0.57 +1.1
132,954 + MPMX19_02882 0.77 -1.4
132,954 + MPMX19_02882 0.77 -1.1
132,955 - MPMX19_02882 0.77 -0.5
132,955 - MPMX19_02882 0.77 +0.3
133,155 + +0.0
133,172 + +0.1
133,172 + -0.2
133,172 + -0.9
133,172 + -1.4
133,172 + -0.2
133,173 - -0.8
133,173 - +0.3
133,173 - +0.1
133,173 - -0.9
133,412 + MPMX19_02883 0.73 -1.1
133,514 - -1.2
133,623 + -1.3
133,623 + +0.4
133,624 - +0.6
133,624 - +0.8
133,704 + MPMX19_02884 0.15 -0.1
133,704 + MPMX19_02884 0.15 -0.6
133,704 + MPMX19_02884 0.15 -0.0
133,704 + MPMX19_02884 0.15 -0.7
133,705 - MPMX19_02884 0.15 -0.4
133,705 - MPMX19_02884 0.15 -0.1
133,705 - MPMX19_02884 0.15 +0.5
133,705 - MPMX19_02884 0.15 -0.2
133,705 - MPMX19_02884 0.15 +0.4
133,705 - MPMX19_02884 0.15 -0.2
133,866 + MPMX19_02884 0.27 -0.4
133,866 + MPMX19_02884 0.27 +0.5
133,866 + MPMX19_02884 0.27 -0.4
133,866 + MPMX19_02884 0.27 -0.2
133,866 + MPMX19_02884 0.27 +0.9
133,867 - MPMX19_02884 0.27 +0.9
133,867 - MPMX19_02884 0.27 +0.8
133,867 - MPMX19_02884 0.27 +0.3
133,867 - MPMX19_02884 0.27 -1.2
133,867 - MPMX19_02884 0.27 -0.9
133,902 + MPMX19_02884 0.30 -1.2
133,903 - MPMX19_02884 0.30 +1.1
133,903 - MPMX19_02884 0.30 -0.1
134,028 + MPMX19_02884 0.39 -1.4
134,028 + MPMX19_02884 0.39 +1.1
134,053 - MPMX19_02884 0.41 +0.0
134,053 - MPMX19_02884 0.41 -0.2
134,206 - MPMX19_02884 0.52 -1.1
134,403 + MPMX19_02884 0.67 -0.6
134,403 + MPMX19_02884 0.67 -0.4
134,404 - MPMX19_02884 0.67 -0.7
134,404 - MPMX19_02884 0.67 +0.8
134,605 + MPMX19_02884 0.82 -0.5
134,606 - MPMX19_02884 0.82 -0.8
134,676 + MPMX19_02884 0.87 +0.0
134,676 + MPMX19_02884 0.87 +0.3
134,676 + MPMX19_02884 0.87 -0.0
134,677 - MPMX19_02884 0.87 -0.6
134,677 - MPMX19_02884 0.87 -1.1
134,677 - MPMX19_02884 0.87 -0.3
134,677 - MPMX19_02884 0.87 +0.4
134,754 + +1.1
134,754 + -0.8
134,754 + -2.4
134,754 + -1.4
134,755 - -0.7
134,755 - +0.1
134,755 - -0.1
134,755 - -0.4
134,851 + -0.6
134,851 + -0.7
134,851 + -1.1
134,851 + +0.4
134,851 + +0.1
134,851 + +0.2
134,851 + -1.1
134,851 + +0.1
134,851 + -2.5
134,851 + -1.7
134,851 + -0.9
134,851 + +1.4
134,851 + -1.9
134,852 - -1.5
134,852 - +0.2
134,852 - +0.0
134,852 - +0.7
134,852 - -0.4
134,852 - -1.5
134,852 - +0.0
134,947 + +2.1
134,947 + -2.1
134,948 - +0.3
134,948 - +0.1
134,948 - -2.5
135,104 + MPMX19_02885 0.16 +1.5
135,104 + MPMX19_02885 0.16 +0.2
135,104 + MPMX19_02885 0.16 -0.7
135,104 + MPMX19_02885 0.16 -0.7
135,104 + MPMX19_02885 0.16 -0.9
135,104 + MPMX19_02885 0.16 -0.6
135,104 + MPMX19_02885 0.16 +0.7
135,105 - MPMX19_02885 0.16 -0.1
135,105 - MPMX19_02885 0.16 +0.4
135,105 - MPMX19_02885 0.16 +0.4
135,105 - MPMX19_02885 0.16 -0.3
135,105 - MPMX19_02885 0.16 -2.3
135,106 + MPMX19_02885 0.17 -1.1
135,106 + MPMX19_02885 0.17 +0.2
135,106 + MPMX19_02885 0.17 +0.3
135,106 + MPMX19_02885 0.17 -0.2
135,106 + MPMX19_02885 0.17 -2.0
135,106 + MPMX19_02885 0.17 +0.7
135,107 - MPMX19_02885 0.17 -0.4
135,107 - MPMX19_02885 0.17 +0.5
135,107 - MPMX19_02885 0.17 -0.3
135,107 - MPMX19_02885 0.17 +0.6
135,107 - MPMX19_02885 0.17 +1.4
135,139 + MPMX19_02885 0.19 -2.2
135,139 + MPMX19_02885 0.19 -0.7
135,139 + MPMX19_02885 0.19 +0.5
135,140 - MPMX19_02885 0.19 -0.5
135,140 - MPMX19_02885 0.19 -1.1
135,140 - MPMX19_02885 0.19 +0.2
135,140 - MPMX19_02885 0.19 -1.4
135,142 + MPMX19_02885 0.19 -0.1
135,143 - MPMX19_02885 0.19 -0.7
135,143 - MPMX19_02885 0.19 -0.0
135,143 - MPMX19_02885 0.19 -0.9
135,143 - MPMX19_02885 0.19 -0.9
135,379 + MPMX19_02885 0.37 -1.4
135,379 + MPMX19_02885 0.37 -1.5
135,379 + MPMX19_02885 0.37 -0.9
135,379 + MPMX19_02885 0.37 +0.6
135,380 - MPMX19_02885 0.37 +0.9
135,380 - MPMX19_02885 0.37 +0.8
135,380 - MPMX19_02885 0.37 +0.1
135,644 + MPMX19_02885 0.56 -2.2
135,844 + MPMX19_02885 0.71 -0.7
135,844 + MPMX19_02885 0.71 -1.5
135,844 + MPMX19_02885 0.71 -0.5
135,844 + MPMX19_02885 0.71 -0.9
135,844 + MPMX19_02885 0.71 +2.1
135,845 - MPMX19_02885 0.71 -0.3
135,845 - MPMX19_02885 0.71 -1.1

Or see this region's nucleotide sequence