Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02879

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02878 and MPMX19_02879 are separated by 160 nucleotidesMPMX19_02879 and MPMX19_02880 are separated by 167 nucleotides MPMX19_02878: MPMX19_02878 - hypothetical protein, at 128,263 to 129,237 _02878 MPMX19_02879: MPMX19_02879 - Pyridoxal 4-dehydrogenase, at 129,398 to 130,384 _02879 MPMX19_02880: MPMX19_02880 - hypothetical protein, at 130,552 to 131,658 _02880 Position (kb) 129 130 131Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 128.641 kb on + strand, within MPMX19_02878at 128.641 kb on + strand, within MPMX19_02878at 128.641 kb on + strand, within MPMX19_02878at 128.641 kb on + strand, within MPMX19_02878at 128.641 kb on + strand, within MPMX19_02878at 128.641 kb on + strand, within MPMX19_02878at 128.642 kb on - strand, within MPMX19_02878at 128.890 kb on - strand, within MPMX19_02878at 128.908 kb on + strand, within MPMX19_02878at 128.909 kb on - strand, within MPMX19_02878at 128.909 kb on - strand, within MPMX19_02878at 128.929 kb on + strand, within MPMX19_02878at 128.930 kb on - strand, within MPMX19_02878at 128.930 kb on - strand, within MPMX19_02878at 129.007 kb on + strand, within MPMX19_02878at 129.007 kb on + strand, within MPMX19_02878at 129.008 kb on - strand, within MPMX19_02878at 129.008 kb on - strand, within MPMX19_02878at 129.008 kb on - strand, within MPMX19_02878at 129.008 kb on - strand, within MPMX19_02878at 129.008 kb on - strand, within MPMX19_02878at 129.287 kb on + strandat 129.287 kb on + strandat 129.287 kb on + strandat 129.288 kb on - strandat 129.288 kb on - strandat 129.530 kb on - strand, within MPMX19_02879at 129.530 kb on - strand, within MPMX19_02879at 129.696 kb on + strand, within MPMX19_02879at 129.696 kb on + strand, within MPMX19_02879at 129.696 kb on + strand, within MPMX19_02879at 129.696 kb on + strand, within MPMX19_02879at 129.696 kb on + strand, within MPMX19_02879at 129.696 kb on + strand, within MPMX19_02879at 129.696 kb on + strand, within MPMX19_02879at 129.697 kb on - strand, within MPMX19_02879at 129.697 kb on - strand, within MPMX19_02879at 129.697 kb on - strand, within MPMX19_02879at 129.697 kb on - strand, within MPMX19_02879at 129.697 kb on - strand, within MPMX19_02879at 129.697 kb on - strand, within MPMX19_02879at 129.780 kb on + strand, within MPMX19_02879at 129.781 kb on - strand, within MPMX19_02879at 129.781 kb on - strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.800 kb on + strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.801 kb on - strand, within MPMX19_02879at 129.983 kb on - strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.984 kb on + strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 129.985 kb on - strand, within MPMX19_02879at 130.059 kb on + strand, within MPMX19_02879at 130.059 kb on + strand, within MPMX19_02879at 130.060 kb on - strand, within MPMX19_02879at 130.066 kb on - strand, within MPMX19_02879at 130.227 kb on + strand, within MPMX19_02879at 130.228 kb on - strand, within MPMX19_02879at 130.503 kb on + strandat 130.503 kb on + strandat 130.503 kb on + strandat 130.503 kb on + strandat 130.503 kb on + strandat 130.504 kb on - strandat 130.504 kb on - strandat 130.504 kb on - strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.549 kb on + strandat 130.550 kb on - strandat 130.550 kb on - strandat 130.550 kb on - strandat 130.550 kb on - strandat 130.550 kb on - strandat 130.550 kb on - strandat 130.550 kb on - strandat 130.550 kb on - strandat 130.550 kb on - strandat 130.550 kb on - strandat 130.550 kb on - strandat 130.550 kb on - strandat 130.550 kb on - strandat 130.550 kb on - strandat 130.550 kb on - strandat 130.550 kb on - strandat 130.550 kb on - strandat 130.550 kb on - strandat 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.693 kb on + strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880at 130.694 kb on - strand, within MPMX19_02880

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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128,641 + MPMX19_02878 0.39 -0.5
128,641 + MPMX19_02878 0.39 +0.5
128,641 + MPMX19_02878 0.39 -3.4
128,641 + MPMX19_02878 0.39 +0.3
128,641 + MPMX19_02878 0.39 +0.2
128,641 + MPMX19_02878 0.39 +0.7
128,642 - MPMX19_02878 0.39 +1.1
128,890 - MPMX19_02878 0.64 -0.9
128,908 + MPMX19_02878 0.66 -1.6
128,909 - MPMX19_02878 0.66 -2.4
128,909 - MPMX19_02878 0.66 -1.4
128,929 + MPMX19_02878 0.68 +0.1
128,930 - MPMX19_02878 0.68 +0.4
128,930 - MPMX19_02878 0.68 -0.1
129,007 + MPMX19_02878 0.76 -0.9
129,007 + MPMX19_02878 0.76 -1.5
129,008 - MPMX19_02878 0.76 -2.4
129,008 - MPMX19_02878 0.76 -0.5
129,008 - MPMX19_02878 0.76 +0.2
129,008 - MPMX19_02878 0.76 -0.6
129,008 - MPMX19_02878 0.76 -1.3
129,287 + +1.3
129,287 + +1.1
129,287 + -1.2
129,288 - +0.4
129,288 - -1.4
129,530 - MPMX19_02879 0.13 -0.3
129,530 - MPMX19_02879 0.13 +0.7
129,696 + MPMX19_02879 0.30 -1.6
129,696 + MPMX19_02879 0.30 +2.7
129,696 + MPMX19_02879 0.30 -1.5
129,696 + MPMX19_02879 0.30 -0.4
129,696 + MPMX19_02879 0.30 -0.8
129,696 + MPMX19_02879 0.30 -1.5
129,696 + MPMX19_02879 0.30 -1.8
129,697 - MPMX19_02879 0.30 -1.4
129,697 - MPMX19_02879 0.30 -0.7
129,697 - MPMX19_02879 0.30 -0.8
129,697 - MPMX19_02879 0.30 +0.5
129,697 - MPMX19_02879 0.30 +1.1
129,697 - MPMX19_02879 0.30 -0.9
129,780 + MPMX19_02879 0.39 -2.2
129,781 - MPMX19_02879 0.39 -1.2
129,781 - MPMX19_02879 0.39 -0.9
129,800 + MPMX19_02879 0.41 -0.2
129,800 + MPMX19_02879 0.41 -0.4
129,800 + MPMX19_02879 0.41 -0.5
129,800 + MPMX19_02879 0.41 -0.9
129,800 + MPMX19_02879 0.41 -1.6
129,800 + MPMX19_02879 0.41 +0.1
129,800 + MPMX19_02879 0.41 +3.4
129,800 + MPMX19_02879 0.41 -0.2
129,800 + MPMX19_02879 0.41 -0.7
129,800 + MPMX19_02879 0.41 -0.9
129,800 + MPMX19_02879 0.41 -0.4
129,800 + MPMX19_02879 0.41 -2.0
129,800 + MPMX19_02879 0.41 -0.5
129,801 - MPMX19_02879 0.41 -1.1
129,801 - MPMX19_02879 0.41 -0.0
129,801 - MPMX19_02879 0.41 +0.5
129,801 - MPMX19_02879 0.41 +0.1
129,801 - MPMX19_02879 0.41 -0.2
129,801 - MPMX19_02879 0.41 +0.1
129,801 - MPMX19_02879 0.41 +0.1
129,801 - MPMX19_02879 0.41 -0.6
129,801 - MPMX19_02879 0.41 +0.2
129,801 - MPMX19_02879 0.41 -2.0
129,983 - MPMX19_02879 0.59 +0.1
129,984 + MPMX19_02879 0.59 +0.5
129,984 + MPMX19_02879 0.59 -0.7
129,984 + MPMX19_02879 0.59 -0.3
129,984 + MPMX19_02879 0.59 -1.4
129,984 + MPMX19_02879 0.59 -0.9
129,984 + MPMX19_02879 0.59 -0.4
129,984 + MPMX19_02879 0.59 +1.1
129,984 + MPMX19_02879 0.59 -0.7
129,984 + MPMX19_02879 0.59 -1.1
129,984 + MPMX19_02879 0.59 -1.1
129,984 + MPMX19_02879 0.59 -0.3
129,984 + MPMX19_02879 0.59 -0.5
129,984 + MPMX19_02879 0.59 +0.5
129,984 + MPMX19_02879 0.59 -0.6
129,984 + MPMX19_02879 0.59 -0.2
129,985 - MPMX19_02879 0.59 -0.7
129,985 - MPMX19_02879 0.59 +0.9
129,985 - MPMX19_02879 0.59 -0.7
129,985 - MPMX19_02879 0.59 -0.9
129,985 - MPMX19_02879 0.59 -0.7
129,985 - MPMX19_02879 0.59 -1.5
129,985 - MPMX19_02879 0.59 -0.4
129,985 - MPMX19_02879 0.59 -0.9
129,985 - MPMX19_02879 0.59 +0.8
129,985 - MPMX19_02879 0.59 -1.0
129,985 - MPMX19_02879 0.59 -2.0
130,059 + MPMX19_02879 0.67 -2.6
130,059 + MPMX19_02879 0.67 -1.5
130,060 - MPMX19_02879 0.67 -0.5
130,066 - MPMX19_02879 0.68 -0.7
130,227 + MPMX19_02879 0.84 -1.1
130,228 - MPMX19_02879 0.84 +0.1
130,503 + -0.5
130,503 + -2.1
130,503 + +0.5
130,503 + +0.2
130,503 + -1.4
130,504 - +0.9
130,504 - -2.7
130,504 - -0.2
130,549 + -0.4
130,549 + -0.3
130,549 + -2.7
130,549 + -2.2
130,549 + -1.3
130,549 + +0.0
130,549 + -0.9
130,549 + -1.4
130,549 + -1.0
130,549 + +0.7
130,549 + -2.2
130,549 + -0.0
130,549 + -0.5
130,549 + +0.6
130,549 + +0.1
130,549 + -1.9
130,549 + -0.1
130,549 + -0.7
130,549 + +0.4
130,549 + -0.2
130,549 + -2.1
130,550 - -0.7
130,550 - -0.7
130,550 - -1.1
130,550 - -1.0
130,550 - -0.6
130,550 - -1.0
130,550 - -0.7
130,550 - -2.4
130,550 - -1.2
130,550 - -0.0
130,550 - -0.4
130,550 - -0.1
130,550 - +0.5
130,550 - +0.4
130,550 - -1.9
130,550 - -1.1
130,550 - -0.2
130,550 - -0.5
130,693 + MPMX19_02880 0.13 -0.7
130,693 + MPMX19_02880 0.13 -0.2
130,693 + MPMX19_02880 0.13 -0.5
130,693 + MPMX19_02880 0.13 -0.8
130,693 + MPMX19_02880 0.13 +0.7
130,693 + MPMX19_02880 0.13 +1.5
130,693 + MPMX19_02880 0.13 -0.6
130,693 + MPMX19_02880 0.13 -0.4
130,693 + MPMX19_02880 0.13 -0.6
130,693 + MPMX19_02880 0.13 -0.1
130,693 + MPMX19_02880 0.13 -0.4
130,693 + MPMX19_02880 0.13 -1.2
130,693 + MPMX19_02880 0.13 +0.4
130,694 - MPMX19_02880 0.13 -0.4
130,694 - MPMX19_02880 0.13 -1.2
130,694 - MPMX19_02880 0.13 -0.4
130,694 - MPMX19_02880 0.13 +0.3
130,694 - MPMX19_02880 0.13 -1.2
130,694 - MPMX19_02880 0.13 -0.6
130,694 - MPMX19_02880 0.13 -0.8
130,694 - MPMX19_02880 0.13 -0.6
130,694 - MPMX19_02880 0.13 +0.4
130,694 - MPMX19_02880 0.13 -0.5
130,694 - MPMX19_02880 0.13 +0.2

Or see this region's nucleotide sequence