Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02860

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02859 and MPMX19_02860 are separated by 162 nucleotidesMPMX19_02860 and MPMX19_02861 are separated by 136 nucleotidesMPMX19_02861 and MPMX19_02862 are separated by 32 nucleotides MPMX19_02859: MPMX19_02859 - L-asparaginase 2, at 103,413 to 104,522 _02859 MPMX19_02860: MPMX19_02860 - hypothetical protein, at 104,685 to 105,251 _02860 MPMX19_02861: MPMX19_02861 - hypothetical protein, at 105,388 to 106,071 _02861 MPMX19_02862: MPMX19_02862 - hypothetical protein, at 106,104 to 106,541 _02862 Position (kb) 104 105 106Strain fitness (log2 ratio) -2 -1 0 1 2at 103.831 kb on - strand, within MPMX19_02859at 103.831 kb on - strand, within MPMX19_02859at 103.929 kb on + strand, within MPMX19_02859at 103.929 kb on + strand, within MPMX19_02859at 103.930 kb on - strand, within MPMX19_02859at 103.930 kb on - strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.083 kb on - strand, within MPMX19_02859at 104.083 kb on - strand, within MPMX19_02859at 104.083 kb on - strand, within MPMX19_02859at 104.083 kb on - strand, within MPMX19_02859at 104.083 kb on - strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.110 kb on - strand, within MPMX19_02859at 104.110 kb on - strand, within MPMX19_02859at 104.110 kb on - strand, within MPMX19_02859at 104.110 kb on - strand, within MPMX19_02859at 104.110 kb on - strand, within MPMX19_02859at 104.193 kb on + strand, within MPMX19_02859at 104.193 kb on + strand, within MPMX19_02859at 104.193 kb on + strand, within MPMX19_02859at 104.193 kb on + strand, within MPMX19_02859at 104.193 kb on + strand, within MPMX19_02859at 104.193 kb on + strand, within MPMX19_02859at 104.193 kb on + strand, within MPMX19_02859at 104.193 kb on + strand, within MPMX19_02859at 104.193 kb on + strand, within MPMX19_02859at 104.194 kb on - strand, within MPMX19_02859at 104.194 kb on - strand, within MPMX19_02859at 104.194 kb on - strand, within MPMX19_02859at 104.194 kb on - strand, within MPMX19_02859at 104.194 kb on - strand, within MPMX19_02859at 104.199 kb on + strand, within MPMX19_02859at 104.199 kb on + strand, within MPMX19_02859at 104.200 kb on - strand, within MPMX19_02859at 104.200 kb on - strand, within MPMX19_02859at 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.511 kb on + strandat 104.512 kb on - strandat 104.512 kb on - strandat 104.512 kb on - strandat 104.512 kb on - strandat 104.512 kb on - strandat 104.512 kb on - strandat 104.512 kb on - strandat 104.512 kb on - strandat 104.517 kb on + strandat 104.517 kb on + strandat 104.517 kb on + strandat 104.517 kb on + strandat 104.517 kb on + strandat 104.518 kb on - strandat 104.518 kb on - strandat 104.518 kb on - strandat 104.518 kb on - strandat 104.518 kb on - strandat 104.518 kb on - strandat 104.518 kb on - strandat 104.518 kb on - strandat 104.518 kb on - strandat 104.755 kb on + strand, within MPMX19_02860at 104.755 kb on + strand, within MPMX19_02860at 104.755 kb on + strand, within MPMX19_02860at 104.755 kb on + strand, within MPMX19_02860at 104.755 kb on + strand, within MPMX19_02860at 104.756 kb on - strand, within MPMX19_02860at 104.756 kb on - strand, within MPMX19_02860at 104.756 kb on - strand, within MPMX19_02860at 104.756 kb on - strand, within MPMX19_02860at 104.756 kb on - strand, within MPMX19_02860at 105.275 kb on - strandat 105.338 kb on + strandat 105.338 kb on + strandat 105.338 kb on + strandat 105.410 kb on - strandat 105.479 kb on + strand, within MPMX19_02861at 105.479 kb on + strand, within MPMX19_02861at 105.479 kb on + strand, within MPMX19_02861at 105.479 kb on + strand, within MPMX19_02861at 105.479 kb on + strand, within MPMX19_02861at 105.479 kb on + strand, within MPMX19_02861at 105.480 kb on - strand, within MPMX19_02861at 105.480 kb on - strand, within MPMX19_02861at 105.480 kb on - strand, within MPMX19_02861at 105.480 kb on - strand, within MPMX19_02861at 105.480 kb on - strand, within MPMX19_02861at 105.480 kb on - strand, within MPMX19_02861at 105.631 kb on + strand, within MPMX19_02861at 105.631 kb on + strand, within MPMX19_02861at 105.631 kb on + strand, within MPMX19_02861at 105.631 kb on + strand, within MPMX19_02861at 105.631 kb on + strand, within MPMX19_02861at 105.632 kb on - strand, within MPMX19_02861at 105.632 kb on - strand, within MPMX19_02861at 105.632 kb on - strand, within MPMX19_02861at 105.632 kb on - strand, within MPMX19_02861at 105.632 kb on - strand, within MPMX19_02861at 105.632 kb on - strand, within MPMX19_02861at 105.632 kb on - strand, within MPMX19_02861at 105.632 kb on - strand, within MPMX19_02861at 105.658 kb on + strand, within MPMX19_02861at 105.658 kb on + strand, within MPMX19_02861at 105.658 kb on + strand, within MPMX19_02861at 105.658 kb on + strand, within MPMX19_02861at 105.659 kb on - strand, within MPMX19_02861at 105.659 kb on - strand, within MPMX19_02861at 105.659 kb on - strand, within MPMX19_02861at 105.659 kb on - strand, within MPMX19_02861at 105.670 kb on + strand, within MPMX19_02861at 105.670 kb on + strand, within MPMX19_02861at 105.671 kb on - strand, within MPMX19_02861at 105.671 kb on - strand, within MPMX19_02861at 105.671 kb on - strand, within MPMX19_02861at 105.671 kb on - strand, within MPMX19_02861at 105.671 kb on - strand, within MPMX19_02861at 105.916 kb on + strand, within MPMX19_02861at 105.916 kb on + strand, within MPMX19_02861at 105.916 kb on + strand, within MPMX19_02861at 105.916 kb on + strand, within MPMX19_02861at 105.916 kb on + strand, within MPMX19_02861at 105.917 kb on - strand, within MPMX19_02861at 105.917 kb on - strand, within MPMX19_02861at 105.921 kb on + strand, within MPMX19_02861at 105.922 kb on - strand, within MPMX19_02861at 105.961 kb on + strand, within MPMX19_02861at 105.962 kb on - strand, within MPMX19_02861

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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103,831 - MPMX19_02859 0.38 +0.7
103,831 - MPMX19_02859 0.38 -0.9
103,929 + MPMX19_02859 0.46 -0.7
103,929 + MPMX19_02859 0.46 -1.1
103,930 - MPMX19_02859 0.47 -1.9
103,930 - MPMX19_02859 0.47 +0.5
104,082 + MPMX19_02859 0.60 -1.1
104,082 + MPMX19_02859 0.60 -0.2
104,082 + MPMX19_02859 0.60 -0.5
104,082 + MPMX19_02859 0.60 +1.7
104,082 + MPMX19_02859 0.60 -0.6
104,082 + MPMX19_02859 0.60 -0.7
104,082 + MPMX19_02859 0.60 -0.6
104,082 + MPMX19_02859 0.60 +0.2
104,082 + MPMX19_02859 0.60 -1.4
104,083 - MPMX19_02859 0.60 -0.4
104,083 - MPMX19_02859 0.60 -0.6
104,083 - MPMX19_02859 0.60 +0.9
104,083 - MPMX19_02859 0.60 -1.1
104,083 - MPMX19_02859 0.60 -1.2
104,084 + MPMX19_02859 0.60 +1.5
104,084 + MPMX19_02859 0.60 +0.0
104,084 + MPMX19_02859 0.60 +0.1
104,084 + MPMX19_02859 0.60 +0.5
104,084 + MPMX19_02859 0.60 -0.7
104,084 + MPMX19_02859 0.60 +0.8
104,084 + MPMX19_02859 0.60 -0.7
104,084 + MPMX19_02859 0.60 -1.3
104,084 + MPMX19_02859 0.60 -0.3
104,085 - MPMX19_02859 0.61 -0.5
104,085 - MPMX19_02859 0.61 +0.2
104,085 - MPMX19_02859 0.61 -0.7
104,085 - MPMX19_02859 0.61 -0.4
104,085 - MPMX19_02859 0.61 -1.7
104,085 - MPMX19_02859 0.61 -0.1
104,085 - MPMX19_02859 0.61 -0.7
104,085 - MPMX19_02859 0.61 +0.0
104,085 - MPMX19_02859 0.61 -0.7
104,085 - MPMX19_02859 0.61 +0.8
104,085 - MPMX19_02859 0.61 -0.4
104,085 - MPMX19_02859 0.61 -1.1
104,085 - MPMX19_02859 0.61 -1.0
104,085 - MPMX19_02859 0.61 -0.5
104,085 - MPMX19_02859 0.61 +0.8
104,085 - MPMX19_02859 0.61 -0.7
104,085 - MPMX19_02859 0.61 -0.9
104,109 + MPMX19_02859 0.63 -0.8
104,109 + MPMX19_02859 0.63 -1.5
104,109 + MPMX19_02859 0.63 -0.7
104,109 + MPMX19_02859 0.63 -1.6
104,109 + MPMX19_02859 0.63 +0.3
104,109 + MPMX19_02859 0.63 -0.3
104,109 + MPMX19_02859 0.63 +0.3
104,110 - MPMX19_02859 0.63 -1.0
104,110 - MPMX19_02859 0.63 +0.5
104,110 - MPMX19_02859 0.63 +0.7
104,110 - MPMX19_02859 0.63 -1.3
104,110 - MPMX19_02859 0.63 -1.0
104,193 + MPMX19_02859 0.70 +0.8
104,193 + MPMX19_02859 0.70 -0.1
104,193 + MPMX19_02859 0.70 +0.5
104,193 + MPMX19_02859 0.70 +0.3
104,193 + MPMX19_02859 0.70 +1.4
104,193 + MPMX19_02859 0.70 -0.8
104,193 + MPMX19_02859 0.70 -1.1
104,193 + MPMX19_02859 0.70 -0.5
104,193 + MPMX19_02859 0.70 -1.7
104,194 - MPMX19_02859 0.70 -0.7
104,194 - MPMX19_02859 0.70 -1.9
104,194 - MPMX19_02859 0.70 -0.9
104,194 - MPMX19_02859 0.70 -0.4
104,194 - MPMX19_02859 0.70 -0.5
104,199 + MPMX19_02859 0.71 +0.4
104,199 + MPMX19_02859 0.71 -1.8
104,200 - MPMX19_02859 0.71 +2.1
104,200 - MPMX19_02859 0.71 -0.1
104,511 + +0.4
104,511 + +0.7
104,511 + +0.3
104,511 + -1.4
104,511 + -0.9
104,511 + +2.7
104,511 + -0.6
104,511 + -0.2
104,511 + -1.1
104,511 + -1.2
104,511 + -2.2
104,511 + -0.9
104,512 - -1.2
104,512 - -2.3
104,512 - -1.2
104,512 - -0.6
104,512 - +0.5
104,512 - -2.4
104,512 - +0.3
104,512 - +0.5
104,517 + -0.9
104,517 + -0.9
104,517 + -0.8
104,517 + -0.1
104,517 + -1.3
104,518 - -0.2
104,518 - +0.2
104,518 - -0.2
104,518 - -0.1
104,518 - -0.4
104,518 - -0.4
104,518 - +1.8
104,518 - -1.9
104,518 - -0.2
104,755 + MPMX19_02860 0.12 +0.5
104,755 + MPMX19_02860 0.12 +0.6
104,755 + MPMX19_02860 0.12 +1.1
104,755 + MPMX19_02860 0.12 +1.5
104,755 + MPMX19_02860 0.12 -1.4
104,756 - MPMX19_02860 0.13 +0.9
104,756 - MPMX19_02860 0.13 -1.1
104,756 - MPMX19_02860 0.13 -0.1
104,756 - MPMX19_02860 0.13 +0.1
104,756 - MPMX19_02860 0.13 +0.1
105,275 - +0.9
105,338 + -0.6
105,338 + +0.1
105,338 + -0.3
105,410 - -0.5
105,479 + MPMX19_02861 0.13 +0.1
105,479 + MPMX19_02861 0.13 -1.3
105,479 + MPMX19_02861 0.13 -2.5
105,479 + MPMX19_02861 0.13 -0.4
105,479 + MPMX19_02861 0.13 +1.4
105,479 + MPMX19_02861 0.13 -1.1
105,480 - MPMX19_02861 0.13 +0.5
105,480 - MPMX19_02861 0.13 +0.0
105,480 - MPMX19_02861 0.13 -0.8
105,480 - MPMX19_02861 0.13 -0.7
105,480 - MPMX19_02861 0.13 +0.1
105,480 - MPMX19_02861 0.13 +1.4
105,631 + MPMX19_02861 0.36 -0.4
105,631 + MPMX19_02861 0.36 -0.5
105,631 + MPMX19_02861 0.36 -0.8
105,631 + MPMX19_02861 0.36 -1.5
105,631 + MPMX19_02861 0.36 -1.1
105,632 - MPMX19_02861 0.36 -0.9
105,632 - MPMX19_02861 0.36 +0.4
105,632 - MPMX19_02861 0.36 -0.2
105,632 - MPMX19_02861 0.36 -1.1
105,632 - MPMX19_02861 0.36 +0.4
105,632 - MPMX19_02861 0.36 +0.1
105,632 - MPMX19_02861 0.36 -0.5
105,632 - MPMX19_02861 0.36 -0.1
105,658 + MPMX19_02861 0.39 -2.0
105,658 + MPMX19_02861 0.39 +0.1
105,658 + MPMX19_02861 0.39 -0.0
105,658 + MPMX19_02861 0.39 +0.4
105,659 - MPMX19_02861 0.40 -1.4
105,659 - MPMX19_02861 0.40 -1.4
105,659 - MPMX19_02861 0.40 +0.1
105,659 - MPMX19_02861 0.40 +0.3
105,670 + MPMX19_02861 0.41 -0.2
105,670 + MPMX19_02861 0.41 -0.5
105,671 - MPMX19_02861 0.41 +0.1
105,671 - MPMX19_02861 0.41 -0.1
105,671 - MPMX19_02861 0.41 -0.5
105,671 - MPMX19_02861 0.41 -0.5
105,671 - MPMX19_02861 0.41 +0.9
105,916 + MPMX19_02861 0.77 -1.5
105,916 + MPMX19_02861 0.77 +0.4
105,916 + MPMX19_02861 0.77 -0.3
105,916 + MPMX19_02861 0.77 -0.0
105,916 + MPMX19_02861 0.77 -0.5
105,917 - MPMX19_02861 0.77 -0.7
105,917 - MPMX19_02861 0.77 +0.5
105,921 + MPMX19_02861 0.78 +1.1
105,922 - MPMX19_02861 0.78 -0.6
105,961 + MPMX19_02861 0.84 +0.1
105,962 - MPMX19_02861 0.84 +0.1

Or see this region's nucleotide sequence