Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02857

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02856 and MPMX19_02857 are separated by 60 nucleotidesMPMX19_02857 and MPMX19_02858 are separated by 107 nucleotides MPMX19_02856: MPMX19_02856 - hypothetical protein, at 99,543 to 101,222 _02856 MPMX19_02857: MPMX19_02857 - HTH-type transcriptional regulator PgrR, at 101,283 to 102,245 _02857 MPMX19_02858: MPMX19_02858 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 102,353 to 103,183 _02858 Position (kb) 101 102 103Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 100.321 kb on + strand, within MPMX19_02856at 100.321 kb on + strand, within MPMX19_02856at 100.322 kb on - strand, within MPMX19_02856at 100.322 kb on - strand, within MPMX19_02856at 100.468 kb on + strand, within MPMX19_02856at 100.469 kb on - strand, within MPMX19_02856at 100.469 kb on - strand, within MPMX19_02856at 100.612 kb on + strand, within MPMX19_02856at 100.613 kb on - strand, within MPMX19_02856at 100.666 kb on + strand, within MPMX19_02856at 100.667 kb on - strand, within MPMX19_02856at 100.667 kb on - strand, within MPMX19_02856at 100.667 kb on - strand, within MPMX19_02856at 100.667 kb on - strand, within MPMX19_02856at 100.885 kb on + strand, within MPMX19_02856at 100.885 kb on + strand, within MPMX19_02856at 100.885 kb on + strand, within MPMX19_02856at 100.885 kb on + strand, within MPMX19_02856at 100.885 kb on + strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.921 kb on + strand, within MPMX19_02856at 100.921 kb on + strand, within MPMX19_02856at 100.921 kb on + strand, within MPMX19_02856at 100.921 kb on + strand, within MPMX19_02856at 100.921 kb on + strand, within MPMX19_02856at 100.921 kb on + strand, within MPMX19_02856at 100.922 kb on - strand, within MPMX19_02856at 101.477 kb on + strand, within MPMX19_02857at 101.477 kb on + strand, within MPMX19_02857at 101.477 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.784 kb on + strand, within MPMX19_02857at 101.784 kb on + strand, within MPMX19_02857at 101.784 kb on + strand, within MPMX19_02857at 101.785 kb on - strand, within MPMX19_02857at 101.911 kb on + strand, within MPMX19_02857at 101.911 kb on + strand, within MPMX19_02857at 101.911 kb on + strand, within MPMX19_02857at 101.911 kb on + strand, within MPMX19_02857at 101.911 kb on + strand, within MPMX19_02857at 101.911 kb on + strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.936 kb on + strand, within MPMX19_02857at 101.936 kb on + strand, within MPMX19_02857at 101.936 kb on + strand, within MPMX19_02857at 101.937 kb on - strand, within MPMX19_02857at 101.937 kb on - strand, within MPMX19_02857at 101.937 kb on - strand, within MPMX19_02857at 101.937 kb on - strand, within MPMX19_02857at 101.937 kb on - strand, within MPMX19_02857at 101.937 kb on - strand, within MPMX19_02857at 101.971 kb on + strand, within MPMX19_02857at 102.217 kb on + strandat 102.217 kb on + strandat 102.217 kb on + strandat 102.217 kb on + strandat 102.217 kb on + strandat 102.217 kb on + strandat 102.218 kb on - strandat 102.218 kb on - strandat 102.218 kb on - strandat 102.218 kb on - strandat 102.218 kb on - strandat 102.276 kb on + strandat 102.276 kb on + strandat 102.276 kb on + strandat 102.277 kb on - strandat 102.307 kb on + strandat 102.308 kb on - strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.326 kb on - strandat 102.326 kb on - strandat 102.326 kb on - strandat 102.326 kb on - strandat 102.326 kb on - strandat 102.326 kb on - strandat 102.326 kb on - strandat 102.326 kb on - strandat 102.596 kb on + strand, within MPMX19_02858at 102.727 kb on + strand, within MPMX19_02858at 102.728 kb on - strand, within MPMX19_02858at 102.782 kb on + strand, within MPMX19_02858at 102.782 kb on + strand, within MPMX19_02858at 102.782 kb on + strand, within MPMX19_02858at 102.782 kb on + strand, within MPMX19_02858at 102.783 kb on - strand, within MPMX19_02858at 102.783 kb on - strand, within MPMX19_02858at 102.783 kb on - strand, within MPMX19_02858at 102.783 kb on - strand, within MPMX19_02858at 102.783 kb on - strand, within MPMX19_02858at 102.783 kb on - strand, within MPMX19_02858at 102.941 kb on + strand, within MPMX19_02858at 102.941 kb on + strand, within MPMX19_02858at 102.941 kb on + strand, within MPMX19_02858at 102.941 kb on + strand, within MPMX19_02858at 102.941 kb on + strand, within MPMX19_02858at 102.941 kb on + strand, within MPMX19_02858at 102.942 kb on - strand, within MPMX19_02858at 102.942 kb on - strand, within MPMX19_02858at 102.942 kb on - strand, within MPMX19_02858at 102.942 kb on - strand, within MPMX19_02858

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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100,321 + MPMX19_02856 0.46 -2.6
100,321 + MPMX19_02856 0.46 -1.3
100,322 - MPMX19_02856 0.46 -0.1
100,322 - MPMX19_02856 0.46 -0.6
100,468 + MPMX19_02856 0.55 -0.0
100,469 - MPMX19_02856 0.55 -0.7
100,469 - MPMX19_02856 0.55 -3.1
100,612 + MPMX19_02856 0.64 +1.0
100,613 - MPMX19_02856 0.64 -0.3
100,666 + MPMX19_02856 0.67 -1.1
100,667 - MPMX19_02856 0.67 -0.9
100,667 - MPMX19_02856 0.67 -1.6
100,667 - MPMX19_02856 0.67 -0.7
100,667 - MPMX19_02856 0.67 -0.0
100,885 + MPMX19_02856 0.80 -0.1
100,885 + MPMX19_02856 0.80 -1.9
100,885 + MPMX19_02856 0.80 -1.4
100,885 + MPMX19_02856 0.80 +1.8
100,885 + MPMX19_02856 0.80 -0.5
100,886 - MPMX19_02856 0.80 -1.1
100,886 - MPMX19_02856 0.80 -1.7
100,886 - MPMX19_02856 0.80 -1.2
100,886 - MPMX19_02856 0.80 +0.2
100,886 - MPMX19_02856 0.80 +0.6
100,886 - MPMX19_02856 0.80 +1.7
100,886 - MPMX19_02856 0.80 -0.1
100,886 - MPMX19_02856 0.80 -1.5
100,886 - MPMX19_02856 0.80 -1.1
100,886 - MPMX19_02856 0.80 -1.6
100,921 + MPMX19_02856 0.82 -0.2
100,921 + MPMX19_02856 0.82 -0.2
100,921 + MPMX19_02856 0.82 +0.9
100,921 + MPMX19_02856 0.82 +0.9
100,921 + MPMX19_02856 0.82 +0.5
100,921 + MPMX19_02856 0.82 -0.8
100,922 - MPMX19_02856 0.82 -0.1
101,477 + MPMX19_02857 0.20 +1.1
101,477 + MPMX19_02857 0.20 +1.1
101,477 + MPMX19_02857 0.20 +1.4
101,623 + MPMX19_02857 0.35 +0.4
101,623 + MPMX19_02857 0.35 -0.6
101,623 + MPMX19_02857 0.35 -1.7
101,623 + MPMX19_02857 0.35 +0.4
101,623 + MPMX19_02857 0.35 -0.5
101,623 + MPMX19_02857 0.35 +1.1
101,623 + MPMX19_02857 0.35 +0.1
101,623 + MPMX19_02857 0.35 +0.1
101,623 + MPMX19_02857 0.35 -0.7
101,623 + MPMX19_02857 0.35 -0.7
101,624 - MPMX19_02857 0.35 -1.1
101,624 - MPMX19_02857 0.35 -2.2
101,624 - MPMX19_02857 0.35 +0.5
101,624 - MPMX19_02857 0.35 -1.1
101,624 - MPMX19_02857 0.35 +0.1
101,624 - MPMX19_02857 0.35 -1.1
101,624 - MPMX19_02857 0.35 -1.2
101,624 - MPMX19_02857 0.35 -0.9
101,784 + MPMX19_02857 0.52 +0.8
101,784 + MPMX19_02857 0.52 -0.5
101,784 + MPMX19_02857 0.52 -1.4
101,785 - MPMX19_02857 0.52 -0.6
101,911 + MPMX19_02857 0.65 -0.1
101,911 + MPMX19_02857 0.65 -1.0
101,911 + MPMX19_02857 0.65 +0.9
101,911 + MPMX19_02857 0.65 +0.5
101,911 + MPMX19_02857 0.65 +0.4
101,911 + MPMX19_02857 0.65 +0.6
101,912 - MPMX19_02857 0.65 -1.1
101,912 - MPMX19_02857 0.65 -0.0
101,912 - MPMX19_02857 0.65 -1.8
101,912 - MPMX19_02857 0.65 -2.4
101,912 - MPMX19_02857 0.65 -2.2
101,912 - MPMX19_02857 0.65 -1.0
101,912 - MPMX19_02857 0.65 -0.3
101,936 + MPMX19_02857 0.68 +0.3
101,936 + MPMX19_02857 0.68 -0.3
101,936 + MPMX19_02857 0.68 +0.7
101,937 - MPMX19_02857 0.68 -2.4
101,937 - MPMX19_02857 0.68 -2.3
101,937 - MPMX19_02857 0.68 -0.4
101,937 - MPMX19_02857 0.68 -2.9
101,937 - MPMX19_02857 0.68 -0.2
101,937 - MPMX19_02857 0.68 -1.3
101,971 + MPMX19_02857 0.71 -1.0
102,217 + -1.4
102,217 + -0.6
102,217 + -0.1
102,217 + -0.1
102,217 + -0.4
102,217 + -0.5
102,218 - +0.6
102,218 - -0.1
102,218 - -1.3
102,218 - -0.8
102,218 - -1.7
102,276 + +1.1
102,276 + -0.6
102,276 + -0.1
102,277 - -0.5
102,307 + +0.7
102,308 - -0.9
102,325 + -2.1
102,325 + +0.4
102,325 + +0.6
102,325 + +0.2
102,325 + -0.4
102,325 + -0.3
102,325 + -0.9
102,325 + -0.0
102,325 + -0.6
102,325 + +0.1
102,325 + -1.2
102,325 + -0.3
102,325 + -0.4
102,325 + -0.8
102,326 - -0.9
102,326 - -0.6
102,326 - -0.2
102,326 - -0.9
102,326 - +0.1
102,326 - -0.4
102,326 - +0.7
102,326 - -1.5
102,596 + MPMX19_02858 0.29 -1.6
102,727 + MPMX19_02858 0.45 -0.5
102,728 - MPMX19_02858 0.45 -0.8
102,782 + MPMX19_02858 0.52 -1.1
102,782 + MPMX19_02858 0.52 -0.7
102,782 + MPMX19_02858 0.52 +0.8
102,782 + MPMX19_02858 0.52 +1.5
102,783 - MPMX19_02858 0.52 -0.6
102,783 - MPMX19_02858 0.52 -0.8
102,783 - MPMX19_02858 0.52 -0.3
102,783 - MPMX19_02858 0.52 +1.4
102,783 - MPMX19_02858 0.52 -0.5
102,783 - MPMX19_02858 0.52 +0.1
102,941 + MPMX19_02858 0.71 +0.7
102,941 + MPMX19_02858 0.71 -0.8
102,941 + MPMX19_02858 0.71 -1.8
102,941 + MPMX19_02858 0.71 +0.4
102,941 + MPMX19_02858 0.71 +1.1
102,941 + MPMX19_02858 0.71 -1.1
102,942 - MPMX19_02858 0.71 -1.4
102,942 - MPMX19_02858 0.71 -0.9
102,942 - MPMX19_02858 0.71 -2.3
102,942 - MPMX19_02858 0.71 -0.4

Or see this region's nucleotide sequence