Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02808

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02807 and MPMX19_02808 are separated by 98 nucleotidesMPMX19_02808 and MPMX19_02809 are separated by 275 nucleotides MPMX19_02807: MPMX19_02807 - L-threonine dehydratase biosynthetic IlvA, at 42,169 to 43,698 _02807 MPMX19_02808: MPMX19_02808 - HTH-type transcriptional repressor NanR, at 43,797 to 44,573 _02808 MPMX19_02809: MPMX19_02809 - D-erythronate kinase, at 44,849 to 46,048 _02809 Position (kb) 43 44 45Strain fitness (log2 ratio) -2 -1 0 1 2at 43.036 kb on + strand, within MPMX19_02807at 43.036 kb on + strand, within MPMX19_02807at 43.037 kb on - strand, within MPMX19_02807at 43.037 kb on - strand, within MPMX19_02807at 43.196 kb on - strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.246 kb on + strand, within MPMX19_02807at 43.247 kb on - strand, within MPMX19_02807at 43.247 kb on - strand, within MPMX19_02807at 43.247 kb on - strand, within MPMX19_02807at 43.252 kb on + strand, within MPMX19_02807at 43.253 kb on - strand, within MPMX19_02807at 43.253 kb on - strand, within MPMX19_02807at 43.402 kb on + strand, within MPMX19_02807at 43.402 kb on + strand, within MPMX19_02807at 43.402 kb on + strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.403 kb on - strand, within MPMX19_02807at 43.555 kb on + strandat 43.737 kb on + strandat 43.737 kb on + strandat 43.737 kb on + strandat 44.439 kb on + strand, within MPMX19_02808at 44.571 kb on + strandat 44.650 kb on + strandat 44.670 kb on + strandat 44.678 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.699 kb on + strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 44.700 kb on - strandat 45.006 kb on - strand, within MPMX19_02809at 45.040 kb on + strand, within MPMX19_02809at 45.040 kb on + strand, within MPMX19_02809at 45.040 kb on + strand, within MPMX19_02809at 45.040 kb on + strand, within MPMX19_02809at 45.041 kb on - strand, within MPMX19_02809at 45.041 kb on - strand, within MPMX19_02809at 45.041 kb on - strand, within MPMX19_02809at 45.147 kb on - strand, within MPMX19_02809at 45.230 kb on - strand, within MPMX19_02809at 45.230 kb on - strand, within MPMX19_02809at 45.230 kb on - strand, within MPMX19_02809

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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43,036 + MPMX19_02807 0.57 +1.4
43,036 + MPMX19_02807 0.57 +0.8
43,037 - MPMX19_02807 0.57 +0.5
43,037 - MPMX19_02807 0.57 +0.4
43,196 - MPMX19_02807 0.67 -0.7
43,246 + MPMX19_02807 0.70 -0.5
43,246 + MPMX19_02807 0.70 -0.5
43,246 + MPMX19_02807 0.70 +0.3
43,246 + MPMX19_02807 0.70 +0.2
43,246 + MPMX19_02807 0.70 +0.3
43,246 + MPMX19_02807 0.70 -2.1
43,246 + MPMX19_02807 0.70 +0.3
43,247 - MPMX19_02807 0.70 -1.1
43,247 - MPMX19_02807 0.70 +0.3
43,247 - MPMX19_02807 0.70 -0.2
43,252 + MPMX19_02807 0.71 -0.2
43,253 - MPMX19_02807 0.71 -0.5
43,253 - MPMX19_02807 0.71 -1.0
43,402 + MPMX19_02807 0.81 -0.1
43,402 + MPMX19_02807 0.81 -1.2
43,402 + MPMX19_02807 0.81 -1.1
43,403 - MPMX19_02807 0.81 +0.5
43,403 - MPMX19_02807 0.81 -0.9
43,403 - MPMX19_02807 0.81 +0.1
43,403 - MPMX19_02807 0.81 -1.3
43,403 - MPMX19_02807 0.81 -1.7
43,403 - MPMX19_02807 0.81 -1.6
43,403 - MPMX19_02807 0.81 +0.4
43,555 + +1.1
43,737 + +0.9
43,737 + -0.7
43,737 + -2.1
44,439 + MPMX19_02808 0.83 -1.7
44,571 + -0.6
44,650 + -1.6
44,670 + -0.6
44,678 + -0.7
44,699 + +0.5
44,699 + -0.2
44,699 + +0.1
44,699 + -1.0
44,699 + -0.3
44,699 + +0.5
44,699 + -2.2
44,699 + -1.7
44,699 + -1.7
44,699 + -1.4
44,699 + -1.1
44,699 + -0.2
44,699 + +0.6
44,699 + -0.3
44,699 + -1.1
44,699 + -0.3
44,699 + -1.8
44,699 + -0.6
44,699 + -2.7
44,699 + -0.2
44,699 + -0.7
44,699 + +0.3
44,700 - -0.8
44,700 - +1.1
44,700 - +0.1
44,700 - -1.4
44,700 - +0.5
44,700 - -0.5
44,700 - +0.3
44,700 - +0.5
44,700 - -0.4
44,700 - +0.5
44,700 - -1.2
44,700 - -0.2
44,700 - -1.4
44,700 - -2.0
44,700 - -0.5
44,700 - +1.9
44,700 - -0.2
44,700 - -0.8
44,700 - -1.8
44,700 - -0.1
44,700 - -0.1
44,700 - +0.5
44,700 - -0.9
44,700 - +1.8
44,700 - -1.6
44,700 - -1.1
44,700 - -0.5
44,700 - +0.9
44,700 - -0.1
44,700 - -2.7
45,006 - MPMX19_02809 0.13 -0.1
45,040 + MPMX19_02809 0.16 -1.4
45,040 + MPMX19_02809 0.16 -0.7
45,040 + MPMX19_02809 0.16 -0.6
45,040 + MPMX19_02809 0.16 -0.1
45,041 - MPMX19_02809 0.16 -1.0
45,041 - MPMX19_02809 0.16 +0.3
45,041 - MPMX19_02809 0.16 +0.7
45,147 - MPMX19_02809 0.25 -0.9
45,230 - MPMX19_02809 0.32 -1.7
45,230 - MPMX19_02809 0.32 +0.8
45,230 - MPMX19_02809 0.32 -0.8

Or see this region's nucleotide sequence