Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02795 and MPMX19_02796 are separated by 8 nucleotides MPMX19_02796 and MPMX19_02797 overlap by 17 nucleotides MPMX19_02797 and MPMX19_02798 are separated by 105 nucleotides
MPMX19_02795: MPMX19_02795 - Homoaconitase large subunit, at 29,866 to 31,122
_02795
MPMX19_02796: MPMX19_02796 - Methanogen homoaconitase small subunit, at 31,131 to 31,694
_02796
MPMX19_02797: MPMX19_02797 - 2,3-dimethylmalate lyase, at 31,678 to 32,538
_02797
MPMX19_02798: MPMX19_02798 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 32,644 to 33,786
_02798
Position (kb) 31
32
33 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 30.748 kb on + strand, within MPMX19_02795 at 30.946 kb on + strand, within MPMX19_02795 at 30.947 kb on - strand, within MPMX19_02795 at 30.947 kb on - strand, within MPMX19_02795 at 31.048 kb on + strand at 31.049 kb on - strand at 31.049 kb on - strand at 31.049 kb on - strand at 31.049 kb on - strand at 31.049 kb on - strand at 31.049 kb on - strand at 31.115 kb on - strand at 31.115 kb on - strand at 31.115 kb on - strand at 31.115 kb on - strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.151 kb on + strand at 31.151 kb on + strand at 31.151 kb on + strand at 31.152 kb on - strand at 31.152 kb on - strand at 31.152 kb on - strand at 31.152 kb on - strand at 31.152 kb on - strand at 31.152 kb on - strand at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.282 kb on - strand, within MPMX19_02796 at 31.282 kb on - strand, within MPMX19_02796 at 31.282 kb on - strand, within MPMX19_02796 at 31.282 kb on - strand, within MPMX19_02796 at 31.282 kb on - strand, within MPMX19_02796 at 31.282 kb on - strand, within MPMX19_02796 at 31.362 kb on + strand, within MPMX19_02796 at 31.744 kb on + strand at 31.744 kb on + strand at 31.745 kb on - strand at 31.745 kb on - strand at 31.745 kb on - strand at 31.745 kb on - strand at 31.745 kb on - strand at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 32.188 kb on + strand, within MPMX19_02797 at 32.188 kb on + strand, within MPMX19_02797 at 32.188 kb on + strand, within MPMX19_02797 at 32.188 kb on + strand, within MPMX19_02797 at 32.188 kb on + strand, within MPMX19_02797 at 32.189 kb on - strand, within MPMX19_02797 at 32.189 kb on - strand, within MPMX19_02797 at 32.189 kb on - strand, within MPMX19_02797 at 32.189 kb on - strand, within MPMX19_02797 at 32.189 kb on - strand, within MPMX19_02797 at 32.189 kb on - strand, within MPMX19_02797 at 32.359 kb on + strand, within MPMX19_02797 at 32.360 kb on - strand, within MPMX19_02797 at 32.521 kb on + strand at 32.881 kb on + strand, within MPMX19_02798 at 32.881 kb on + strand, within MPMX19_02798 at 32.881 kb on + strand, within MPMX19_02798 at 32.881 kb on + strand, within MPMX19_02798 at 32.881 kb on + strand, within MPMX19_02798 at 32.882 kb on - strand, within MPMX19_02798 at 32.882 kb on - strand, within MPMX19_02798 at 32.882 kb on - strand, within MPMX19_02798 at 32.882 kb on - strand, within MPMX19_02798 at 32.882 kb on - strand, within MPMX19_02798 at 32.882 kb on - strand, within MPMX19_02798 at 32.882 kb on - strand, within MPMX19_02798 at 33.073 kb on + strand, within MPMX19_02798 at 33.073 kb on + strand, within MPMX19_02798 at 33.073 kb on + strand, within MPMX19_02798 at 33.073 kb on + strand, within MPMX19_02798 at 33.073 kb on + strand, within MPMX19_02798 at 33.073 kb on + strand, within MPMX19_02798 at 33.074 kb on - strand, within MPMX19_02798 at 33.074 kb on - strand, within MPMX19_02798 at 33.074 kb on - strand, within MPMX19_02798 at 33.074 kb on - strand, within MPMX19_02798 at 33.074 kb on - strand, within MPMX19_02798 at 33.074 kb on - strand, within MPMX19_02798 at 33.074 kb on - strand, within MPMX19_02798 at 33.074 kb on - strand, within MPMX19_02798 at 33.074 kb on - strand, within MPMX19_02798 at 33.118 kb on + strand, within MPMX19_02798 at 33.118 kb on + strand, within MPMX19_02798 at 33.118 kb on + strand, within MPMX19_02798 at 33.118 kb on + strand, within MPMX19_02798 at 33.118 kb on + strand, within MPMX19_02798 at 33.119 kb on - strand, within MPMX19_02798 at 33.208 kb on + strand, within MPMX19_02798 at 33.208 kb on + strand, within MPMX19_02798 at 33.208 kb on + strand, within MPMX19_02798 at 33.209 kb on - strand, within MPMX19_02798 at 33.209 kb on - strand, within MPMX19_02798 at 33.209 kb on - strand, within MPMX19_02798 at 33.209 kb on - strand, within MPMX19_02798 at 33.209 kb on - strand, within MPMX19_02798 at 33.209 kb on - strand, within MPMX19_02798 at 33.209 kb on - strand, within MPMX19_02798 at 33.259 kb on + strand, within MPMX19_02798 at 33.259 kb on + strand, within MPMX19_02798 at 33.259 kb on + strand, within MPMX19_02798 at 33.260 kb on - strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.328 kb on + strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.329 kb on - strand, within MPMX19_02798 at 33.472 kb on + strand, within MPMX19_02798 at 33.472 kb on + strand, within MPMX19_02798 at 33.472 kb on + strand, within MPMX19_02798 at 33.472 kb on + strand, within MPMX19_02798 at 33.472 kb on + strand, within MPMX19_02798 at 33.472 kb on + strand, within MPMX19_02798 at 33.472 kb on + strand, within MPMX19_02798 at 33.472 kb on + strand, within MPMX19_02798 at 33.473 kb on - strand, within MPMX19_02798 at 33.473 kb on - strand, within MPMX19_02798 at 33.473 kb on - strand, within MPMX19_02798 at 33.473 kb on - strand, within MPMX19_02798 at 33.536 kb on - strand, within MPMX19_02798
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 30,748 + MPMX19_02795 0.70 -0.1 30,946 + MPMX19_02795 0.86 -0.4 30,947 - MPMX19_02795 0.86 +0.1 30,947 - MPMX19_02795 0.86 -0.5 31,048 + -0.4 31,049 - +0.5 31,049 - -1.6 31,049 - -0.6 31,049 - +0.1 31,049 - -1.1 31,049 - +0.3 31,115 - -0.2 31,115 - +0.2 31,115 - +0.0 31,115 - -1.4 31,148 + -1.1 31,148 + -3.5 31,148 + -0.0 31,148 + -0.4 31,148 + -1.9 31,148 + -0.2 31,148 + -0.6 31,148 + -0.9 31,148 + -1.2 31,148 + +0.0 31,148 + +0.1 31,148 + -2.0 31,148 + +0.9 31,148 + -0.2 31,148 + -0.1 31,148 + -0.2 31,148 + -0.2 31,148 + +0.4 31,148 + -1.7 31,149 - -0.5 31,149 - -0.2 31,149 - +0.9 31,149 - +0.4 31,149 - -2.4 31,149 - -0.2 31,149 - -0.7 31,149 - +0.7 31,149 - +0.4 31,149 - -0.6 31,149 - -0.7 31,149 - -0.7 31,149 - -0.2 31,149 - +0.1 31,149 - +0.2 31,149 - +0.3 31,149 - -1.9 31,149 - +1.1 31,149 - -1.4 31,149 - -0.0 31,149 - +0.1 31,151 + -1.1 31,151 + +0.8 31,151 + -0.6 31,152 - -1.5 31,152 - +0.6 31,152 - -0.6 31,152 - -1.1 31,152 - -0.2 31,152 - -0.1 31,281 + MPMX19_02796 0.27 -0.4 31,281 + MPMX19_02796 0.27 -1.7 31,281 + MPMX19_02796 0.27 -0.2 31,281 + MPMX19_02796 0.27 -0.5 31,281 + MPMX19_02796 0.27 +0.6 31,281 + MPMX19_02796 0.27 -0.9 31,281 + MPMX19_02796 0.27 -1.5 31,281 + MPMX19_02796 0.27 -0.8 31,282 - MPMX19_02796 0.27 +0.1 31,282 - MPMX19_02796 0.27 -0.3 31,282 - MPMX19_02796 0.27 +0.4 31,282 - MPMX19_02796 0.27 -1.6 31,282 - MPMX19_02796 0.27 -1.1 31,282 - MPMX19_02796 0.27 -0.8 31,362 + MPMX19_02796 0.41 +1.1 31,744 + +0.1 31,744 + -0.9 31,745 - -0.0 31,745 - +0.7 31,745 - +0.7 31,745 - +0.7 31,745 - -0.4 31,852 + MPMX19_02797 0.20 -0.7 31,852 + MPMX19_02797 0.20 -0.5 31,852 + MPMX19_02797 0.20 +0.5 31,852 + MPMX19_02797 0.20 +0.3 31,852 + MPMX19_02797 0.20 -0.6 31,852 + MPMX19_02797 0.20 -0.2 31,852 + MPMX19_02797 0.20 +0.4 31,852 + MPMX19_02797 0.20 -0.3 31,852 + MPMX19_02797 0.20 +0.4 31,852 + MPMX19_02797 0.20 -0.6 31,852 + MPMX19_02797 0.20 +0.1 31,853 - MPMX19_02797 0.20 +0.3 31,853 - MPMX19_02797 0.20 -1.6 31,853 - MPMX19_02797 0.20 -0.4 31,853 - MPMX19_02797 0.20 -1.1 31,853 - MPMX19_02797 0.20 +1.0 31,853 - MPMX19_02797 0.20 +0.6 31,853 - MPMX19_02797 0.20 +0.9 31,853 - MPMX19_02797 0.20 -0.6 31,853 - MPMX19_02797 0.20 -0.9 32,188 + MPMX19_02797 0.59 +0.2 32,188 + MPMX19_02797 0.59 -1.5 32,188 + MPMX19_02797 0.59 +0.1 32,188 + MPMX19_02797 0.59 +0.4 32,188 + MPMX19_02797 0.59 +1.1 32,189 - MPMX19_02797 0.59 +0.9 32,189 - MPMX19_02797 0.59 -1.7 32,189 - MPMX19_02797 0.59 -0.0 32,189 - MPMX19_02797 0.59 +0.3 32,189 - MPMX19_02797 0.59 -0.9 32,189 - MPMX19_02797 0.59 -1.7 32,359 + MPMX19_02797 0.79 +0.4 32,360 - MPMX19_02797 0.79 -0.7 32,521 + +0.3 32,881 + MPMX19_02798 0.21 -1.2 32,881 + MPMX19_02798 0.21 -0.5 32,881 + MPMX19_02798 0.21 +2.7 32,881 + MPMX19_02798 0.21 -0.7 32,881 + MPMX19_02798 0.21 -0.5 32,882 - MPMX19_02798 0.21 +0.2 32,882 - MPMX19_02798 0.21 +0.3 32,882 - MPMX19_02798 0.21 -2.5 32,882 - MPMX19_02798 0.21 -0.1 32,882 - MPMX19_02798 0.21 -1.3 32,882 - MPMX19_02798 0.21 -0.1 32,882 - MPMX19_02798 0.21 +1.1 33,073 + MPMX19_02798 0.38 -0.3 33,073 + MPMX19_02798 0.38 -0.7 33,073 + MPMX19_02798 0.38 +0.4 33,073 + MPMX19_02798 0.38 -0.7 33,073 + MPMX19_02798 0.38 +0.7 33,073 + MPMX19_02798 0.38 +0.8 33,074 - MPMX19_02798 0.38 -0.8 33,074 - MPMX19_02798 0.38 -1.1 33,074 - MPMX19_02798 0.38 -1.2 33,074 - MPMX19_02798 0.38 -0.1 33,074 - MPMX19_02798 0.38 -0.4 33,074 - MPMX19_02798 0.38 -0.0 33,074 - MPMX19_02798 0.38 -0.4 33,074 - MPMX19_02798 0.38 -0.5 33,074 - MPMX19_02798 0.38 -0.7 33,118 + MPMX19_02798 0.41 +0.9 33,118 + MPMX19_02798 0.41 -1.6 33,118 + MPMX19_02798 0.41 -1.4 33,118 + MPMX19_02798 0.41 -0.5 33,118 + MPMX19_02798 0.41 -1.9 33,119 - MPMX19_02798 0.42 -0.1 33,208 + MPMX19_02798 0.49 -0.7 33,208 + MPMX19_02798 0.49 +0.5 33,208 + MPMX19_02798 0.49 -0.8 33,209 - MPMX19_02798 0.49 -0.4 33,209 - MPMX19_02798 0.49 +0.1 33,209 - MPMX19_02798 0.49 -1.6 33,209 - MPMX19_02798 0.49 -0.1 33,209 - MPMX19_02798 0.49 -0.2 33,209 - MPMX19_02798 0.49 -0.5 33,209 - MPMX19_02798 0.49 -1.4 33,259 + MPMX19_02798 0.54 -0.2 33,259 + MPMX19_02798 0.54 +1.8 33,259 + MPMX19_02798 0.54 +0.1 33,260 - MPMX19_02798 0.54 -0.5 33,328 + MPMX19_02798 0.60 +0.8 33,328 + MPMX19_02798 0.60 -1.1 33,328 + MPMX19_02798 0.60 -0.8 33,328 + MPMX19_02798 0.60 +0.2 33,328 + MPMX19_02798 0.60 -1.1 33,328 + MPMX19_02798 0.60 -0.9 33,328 + MPMX19_02798 0.60 +0.9 33,328 + MPMX19_02798 0.60 -1.4 33,328 + MPMX19_02798 0.60 -0.4 33,328 + MPMX19_02798 0.60 -0.6 33,328 + MPMX19_02798 0.60 -0.4 33,328 + MPMX19_02798 0.60 -1.1 33,328 + MPMX19_02798 0.60 +0.1 33,328 + MPMX19_02798 0.60 +0.8 33,329 - MPMX19_02798 0.60 -1.4 33,329 - MPMX19_02798 0.60 -1.1 33,329 - MPMX19_02798 0.60 +2.1 33,329 - MPMX19_02798 0.60 -1.2 33,329 - MPMX19_02798 0.60 -0.5 33,329 - MPMX19_02798 0.60 -1.4 33,329 - MPMX19_02798 0.60 -0.1 33,329 - MPMX19_02798 0.60 +0.3 33,329 - MPMX19_02798 0.60 +0.7 33,329 - MPMX19_02798 0.60 -0.7 33,329 - MPMX19_02798 0.60 -1.2 33,329 - MPMX19_02798 0.60 -0.5 33,329 - MPMX19_02798 0.60 +0.2 33,329 - MPMX19_02798 0.60 -0.8 33,329 - MPMX19_02798 0.60 +1.1 33,472 + MPMX19_02798 0.72 -0.9 33,472 + MPMX19_02798 0.72 +0.2 33,472 + MPMX19_02798 0.72 -0.1 33,472 + MPMX19_02798 0.72 -0.5 33,472 + MPMX19_02798 0.72 -1.9 33,472 + MPMX19_02798 0.72 -0.7 33,472 + MPMX19_02798 0.72 -1.4 33,472 + MPMX19_02798 0.72 -0.8 33,473 - MPMX19_02798 0.73 -0.8 33,473 - MPMX19_02798 0.73 +0.2 33,473 - MPMX19_02798 0.73 +0.1 33,473 - MPMX19_02798 0.73 +0.1 33,536 - MPMX19_02798 0.78 +0.5
Or see this region's nucleotide sequence