Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02791

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02790 and MPMX19_02791 are separated by 274 nucleotidesMPMX19_02791 and MPMX19_02792 are separated by 47 nucleotides MPMX19_02790: MPMX19_02790 - Long-chain-fatty-acid--CoA ligase, at 22,503 to 24,110 _02790 MPMX19_02791: MPMX19_02791 - Haloalkane dehalogenase, at 24,385 to 26,001 _02791 MPMX19_02792: MPMX19_02792 - HTH-type transcriptional regulator KipR, at 26,049 to 26,942 _02792 Position (kb) 24 25 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1at 23.440 kb on + strand, within MPMX19_02790at 23.440 kb on + strand, within MPMX19_02790at 23.533 kb on + strand, within MPMX19_02790at 23.533 kb on + strand, within MPMX19_02790at 23.533 kb on + strand, within MPMX19_02790at 23.534 kb on - strand, within MPMX19_02790at 23.534 kb on - strand, within MPMX19_02790at 23.534 kb on - strand, within MPMX19_02790at 23.534 kb on - strand, within MPMX19_02790at 23.605 kb on - strand, within MPMX19_02790at 23.938 kb on + strand, within MPMX19_02790at 23.938 kb on + strand, within MPMX19_02790at 23.938 kb on + strand, within MPMX19_02790at 23.938 kb on + strand, within MPMX19_02790at 23.938 kb on + strand, within MPMX19_02790at 23.938 kb on + strand, within MPMX19_02790at 23.938 kb on + strand, within MPMX19_02790at 23.938 kb on + strand, within MPMX19_02790at 23.938 kb on + strand, within MPMX19_02790at 23.938 kb on + strand, within MPMX19_02790at 23.938 kb on + strand, within MPMX19_02790at 23.938 kb on + strand, within MPMX19_02790at 23.939 kb on - strand, within MPMX19_02790at 23.939 kb on - strand, within MPMX19_02790at 23.939 kb on - strand, within MPMX19_02790at 23.939 kb on - strand, within MPMX19_02790at 23.939 kb on - strand, within MPMX19_02790at 23.939 kb on - strand, within MPMX19_02790at 23.945 kb on - strand, within MPMX19_02790at 23.945 kb on - strand, within MPMX19_02790at 24.037 kb on + strandat 24.037 kb on + strandat 24.038 kb on - strandat 24.038 kb on - strandat 24.038 kb on - strandat 24.152 kb on + strandat 24.152 kb on + strandat 24.152 kb on + strandat 24.153 kb on - strandat 24.153 kb on - strandat 24.153 kb on - strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.400 kb on + strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.401 kb on - strandat 24.718 kb on + strand, within MPMX19_02791at 24.718 kb on + strand, within MPMX19_02791at 24.959 kb on - strand, within MPMX19_02791at 25.029 kb on + strand, within MPMX19_02791at 25.029 kb on + strand, within MPMX19_02791at 25.029 kb on + strand, within MPMX19_02791at 25.029 kb on + strand, within MPMX19_02791at 25.029 kb on + strand, within MPMX19_02791at 25.029 kb on + strand, within MPMX19_02791at 25.029 kb on + strand, within MPMX19_02791at 25.030 kb on - strand, within MPMX19_02791at 25.030 kb on - strand, within MPMX19_02791at 25.030 kb on - strand, within MPMX19_02791at 25.030 kb on - strand, within MPMX19_02791at 25.030 kb on - strand, within MPMX19_02791at 25.030 kb on - strand, within MPMX19_02791at 25.030 kb on - strand, within MPMX19_02791at 25.030 kb on - strand, within MPMX19_02791at 25.148 kb on - strand, within MPMX19_02791at 25.148 kb on - strand, within MPMX19_02791at 25.298 kb on - strand, within MPMX19_02791at 25.298 kb on - strand, within MPMX19_02791at 25.298 kb on - strand, within MPMX19_02791at 25.537 kb on + strand, within MPMX19_02791at 25.537 kb on + strand, within MPMX19_02791at 25.537 kb on + strand, within MPMX19_02791at 25.537 kb on + strand, within MPMX19_02791at 25.537 kb on + strand, within MPMX19_02791at 25.537 kb on + strand, within MPMX19_02791at 25.537 kb on + strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.723 kb on + strand, within MPMX19_02791at 25.724 kb on - strand, within MPMX19_02791at 25.735 kb on + strand, within MPMX19_02791at 25.736 kb on - strand, within MPMX19_02791at 25.753 kb on + strand, within MPMX19_02791at 25.900 kb on + strandat 25.925 kb on + strandat 25.925 kb on + strandat 25.926 kb on - strandat 25.926 kb on - strandat 25.946 kb on - strandat 25.999 kb on + strandat 25.999 kb on + strandat 25.999 kb on + strandat 26.000 kb on - strandat 26.000 kb on - strandat 26.000 kb on - strandat 26.007 kb on + strandat 26.007 kb on + strandat 26.007 kb on + strandat 26.007 kb on + strandat 26.008 kb on - strandat 26.008 kb on - strandat 26.008 kb on - strandat 26.110 kb on + strandat 26.110 kb on + strandat 26.111 kb on - strandat 26.373 kb on - strand, within MPMX19_02792at 26.373 kb on - strand, within MPMX19_02792at 26.416 kb on + strand, within MPMX19_02792at 26.416 kb on + strand, within MPMX19_02792at 26.417 kb on - strand, within MPMX19_02792at 26.417 kb on - strand, within MPMX19_02792at 26.417 kb on - strand, within MPMX19_02792at 26.542 kb on + strand, within MPMX19_02792at 26.542 kb on + strand, within MPMX19_02792at 26.543 kb on - strand, within MPMX19_02792at 26.543 kb on - strand, within MPMX19_02792at 26.543 kb on - strand, within MPMX19_02792at 26.671 kb on + strand, within MPMX19_02792at 26.672 kb on - strand, within MPMX19_02792at 26.672 kb on - strand, within MPMX19_02792at 26.672 kb on - strand, within MPMX19_02792at 26.672 kb on - strand, within MPMX19_02792at 26.672 kb on - strand, within MPMX19_02792at 26.804 kb on - strand, within MPMX19_02792at 26.804 kb on - strand, within MPMX19_02792at 26.942 kb on + strandat 26.942 kb on + strandat 26.943 kb on - strandat 26.958 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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23,440 + MPMX19_02790 0.58 -0.5
23,440 + MPMX19_02790 0.58 +1.5
23,533 + MPMX19_02790 0.64 -0.7
23,533 + MPMX19_02790 0.64 -0.7
23,533 + MPMX19_02790 0.64 -2.1
23,534 - MPMX19_02790 0.64 -0.2
23,534 - MPMX19_02790 0.64 +0.5
23,534 - MPMX19_02790 0.64 +1.0
23,534 - MPMX19_02790 0.64 -1.6
23,605 - MPMX19_02790 0.69 -2.4
23,938 + MPMX19_02790 0.89 +0.5
23,938 + MPMX19_02790 0.89 -0.5
23,938 + MPMX19_02790 0.89 -0.2
23,938 + MPMX19_02790 0.89 +0.1
23,938 + MPMX19_02790 0.89 -1.2
23,938 + MPMX19_02790 0.89 +1.7
23,938 + MPMX19_02790 0.89 -0.1
23,938 + MPMX19_02790 0.89 -0.2
23,938 + MPMX19_02790 0.89 -0.5
23,938 + MPMX19_02790 0.89 -0.7
23,938 + MPMX19_02790 0.89 -0.5
23,938 + MPMX19_02790 0.89 -0.1
23,939 - MPMX19_02790 0.89 -1.0
23,939 - MPMX19_02790 0.89 +0.1
23,939 - MPMX19_02790 0.89 -0.6
23,939 - MPMX19_02790 0.89 +1.1
23,939 - MPMX19_02790 0.89 -0.6
23,939 - MPMX19_02790 0.89 +0.6
23,945 - MPMX19_02790 0.90 +1.3
23,945 - MPMX19_02790 0.90 +0.0
24,037 + +0.5
24,037 + -0.7
24,038 - -0.3
24,038 - -0.6
24,038 - -1.8
24,152 + -1.5
24,152 + +0.2
24,152 + +0.5
24,153 - -1.0
24,153 - -2.0
24,153 - -1.7
24,400 + -0.9
24,400 + +0.5
24,400 + -0.6
24,400 + -0.3
24,400 + -0.3
24,400 + -0.2
24,400 + -1.2
24,400 + -0.2
24,400 + -0.7
24,401 - +0.3
24,401 - -0.1
24,401 - -0.2
24,401 - +1.3
24,401 - +1.5
24,401 - +1.5
24,401 - -0.9
24,401 - -0.7
24,718 + MPMX19_02791 0.21 -0.9
24,718 + MPMX19_02791 0.21 -0.8
24,959 - MPMX19_02791 0.35 -0.7
25,029 + MPMX19_02791 0.40 +0.3
25,029 + MPMX19_02791 0.40 +0.5
25,029 + MPMX19_02791 0.40 -0.2
25,029 + MPMX19_02791 0.40 +0.6
25,029 + MPMX19_02791 0.40 -0.8
25,029 + MPMX19_02791 0.40 +0.5
25,029 + MPMX19_02791 0.40 -0.5
25,030 - MPMX19_02791 0.40 +0.4
25,030 - MPMX19_02791 0.40 +0.3
25,030 - MPMX19_02791 0.40 -2.1
25,030 - MPMX19_02791 0.40 -0.2
25,030 - MPMX19_02791 0.40 +0.1
25,030 - MPMX19_02791 0.40 -0.7
25,030 - MPMX19_02791 0.40 -1.9
25,030 - MPMX19_02791 0.40 -0.1
25,148 - MPMX19_02791 0.47 -0.6
25,148 - MPMX19_02791 0.47 -0.2
25,298 - MPMX19_02791 0.56 -1.2
25,298 - MPMX19_02791 0.56 -0.3
25,298 - MPMX19_02791 0.56 -0.7
25,537 + MPMX19_02791 0.71 -1.0
25,537 + MPMX19_02791 0.71 -0.2
25,537 + MPMX19_02791 0.71 -1.1
25,537 + MPMX19_02791 0.71 +0.9
25,537 + MPMX19_02791 0.71 -0.3
25,537 + MPMX19_02791 0.71 +0.2
25,537 + MPMX19_02791 0.71 -1.8
25,538 - MPMX19_02791 0.71 -1.4
25,538 - MPMX19_02791 0.71 -0.9
25,538 - MPMX19_02791 0.71 -0.4
25,538 - MPMX19_02791 0.71 -0.3
25,538 - MPMX19_02791 0.71 -0.2
25,538 - MPMX19_02791 0.71 -2.1
25,538 - MPMX19_02791 0.71 +0.7
25,538 - MPMX19_02791 0.71 -0.3
25,538 - MPMX19_02791 0.71 +0.0
25,538 - MPMX19_02791 0.71 -2.3
25,538 - MPMX19_02791 0.71 -0.0
25,723 + MPMX19_02791 0.83 -0.4
25,724 - MPMX19_02791 0.83 +0.7
25,735 + MPMX19_02791 0.83 -2.6
25,736 - MPMX19_02791 0.84 -0.1
25,753 + MPMX19_02791 0.85 -0.4
25,900 + +0.9
25,925 + +0.6
25,925 + +1.4
25,926 - -1.4
25,926 - -0.2
25,946 - -0.3
25,999 + -1.2
25,999 + -0.2
25,999 + +0.3
26,000 - -2.0
26,000 - -0.7
26,000 - +1.4
26,007 + -1.1
26,007 + +0.0
26,007 + +0.8
26,007 + -0.2
26,008 - -0.0
26,008 - -0.7
26,008 - -0.0
26,110 + -1.7
26,110 + -1.5
26,111 - +0.6
26,373 - MPMX19_02792 0.36 +0.5
26,373 - MPMX19_02792 0.36 +0.2
26,416 + MPMX19_02792 0.41 -0.1
26,416 + MPMX19_02792 0.41 -1.7
26,417 - MPMX19_02792 0.41 -2.1
26,417 - MPMX19_02792 0.41 -1.2
26,417 - MPMX19_02792 0.41 +0.1
26,542 + MPMX19_02792 0.55 +1.4
26,542 + MPMX19_02792 0.55 -0.4
26,543 - MPMX19_02792 0.55 +0.8
26,543 - MPMX19_02792 0.55 +1.1
26,543 - MPMX19_02792 0.55 -0.7
26,671 + MPMX19_02792 0.70 -0.1
26,672 - MPMX19_02792 0.70 -1.2
26,672 - MPMX19_02792 0.70 +0.1
26,672 - MPMX19_02792 0.70 +0.4
26,672 - MPMX19_02792 0.70 -0.3
26,672 - MPMX19_02792 0.70 +0.5
26,804 - MPMX19_02792 0.84 -0.8
26,804 - MPMX19_02792 0.84 -2.8
26,942 + +0.8
26,942 + -0.4
26,943 - +0.5
26,958 - +0.6

Or see this region's nucleotide sequence