Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02786 and MPMX19_02787 overlap by 4 nucleotides MPMX19_02787 and MPMX19_02788 are separated by 17 nucleotides MPMX19_02788 and MPMX19_02789 are separated by 149 nucleotides
MPMX19_02786: MPMX19_02786 - hypothetical protein, at 18,526 to 19,581
_02786
MPMX19_02787: MPMX19_02787 - (R)-benzylsuccinyl-CoA dehydrogenase, at 19,578 to 20,774
_02787
MPMX19_02788: MPMX19_02788 - Gluconate 5-dehydrogenase, at 20,792 to 21,559
_02788
MPMX19_02789: MPMX19_02789 - hypothetical protein, at 21,709 to 22,404
_02789
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.696 kb on - strand, within MPMX19_02786 at 18.749 kb on + strand, within MPMX19_02786 at 18.749 kb on + strand, within MPMX19_02786 at 18.750 kb on - strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.921 kb on - strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.987 kb on - strand, within MPMX19_02786 at 19.014 kb on - strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.615 kb on + strand at 19.615 kb on + strand at 19.615 kb on + strand at 19.615 kb on + strand at 19.615 kb on + strand at 19.615 kb on + strand at 19.615 kb on + strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.681 kb on + strand at 19.687 kb on + strand at 19.687 kb on + strand at 19.687 kb on + strand at 19.688 kb on - strand at 19.688 kb on - strand at 19.688 kb on - strand at 19.954 kb on + strand, within MPMX19_02787 at 19.954 kb on + strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 20.536 kb on + strand, within MPMX19_02787 at 20.536 kb on + strand, within MPMX19_02787 at 20.536 kb on + strand, within MPMX19_02787 at 20.536 kb on + strand, within MPMX19_02787 at 20.741 kb on - strand at 20.741 kb on - strand at 20.847 kb on + strand at 20.847 kb on + strand at 20.847 kb on + strand at 20.847 kb on + strand at 20.847 kb on + strand at 20.847 kb on + strand at 20.847 kb on + strand at 20.847 kb on + strand at 20.847 kb on + strand at 20.847 kb on + strand at 20.847 kb on + strand at 20.847 kb on + strand at 20.848 kb on - strand at 20.848 kb on - strand at 20.848 kb on - strand at 20.848 kb on - strand at 20.848 kb on - strand at 20.988 kb on + strand, within MPMX19_02788 at 20.988 kb on + strand, within MPMX19_02788 at 21.084 kb on + strand, within MPMX19_02788 at 21.084 kb on + strand, within MPMX19_02788 at 21.085 kb on - strand, within MPMX19_02788 at 21.085 kb on - strand, within MPMX19_02788 at 21.085 kb on - strand, within MPMX19_02788 at 21.085 kb on - strand, within MPMX19_02788 at 21.085 kb on - strand, within MPMX19_02788 at 21.085 kb on - strand, within MPMX19_02788 at 21.085 kb on - strand, within MPMX19_02788 at 21.085 kb on - strand, within MPMX19_02788 at 21.085 kb on - strand, within MPMX19_02788 at 21.085 kb on - strand, within MPMX19_02788 at 21.215 kb on - strand, within MPMX19_02788 at 21.697 kb on - strand at 21.709 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 18,696 - MPMX19_02786 0.16 -0.0 18,749 + MPMX19_02786 0.21 -0.7 18,749 + MPMX19_02786 0.21 -0.5 18,750 - MPMX19_02786 0.21 +0.9 18,903 + MPMX19_02786 0.36 -0.9 18,903 + MPMX19_02786 0.36 -2.1 18,903 + MPMX19_02786 0.36 +0.6 18,903 + MPMX19_02786 0.36 -0.4 18,903 + MPMX19_02786 0.36 +0.3 18,903 + MPMX19_02786 0.36 -0.3 18,903 + MPMX19_02786 0.36 -0.2 18,903 + MPMX19_02786 0.36 +0.3 18,903 + MPMX19_02786 0.36 -0.7 18,904 - MPMX19_02786 0.36 -0.9 18,904 - MPMX19_02786 0.36 -1.2 18,904 - MPMX19_02786 0.36 -0.5 18,904 - MPMX19_02786 0.36 -0.2 18,904 - MPMX19_02786 0.36 -1.5 18,904 - MPMX19_02786 0.36 +0.5 18,904 - MPMX19_02786 0.36 -1.1 18,905 + MPMX19_02786 0.36 -1.5 18,905 + MPMX19_02786 0.36 -0.1 18,905 + MPMX19_02786 0.36 -0.6 18,905 + MPMX19_02786 0.36 -1.5 18,905 + MPMX19_02786 0.36 +0.4 18,905 + MPMX19_02786 0.36 -0.7 18,905 + MPMX19_02786 0.36 -2.4 18,905 + MPMX19_02786 0.36 -1.5 18,905 + MPMX19_02786 0.36 +0.6 18,905 + MPMX19_02786 0.36 -1.7 18,905 + MPMX19_02786 0.36 -0.5 18,905 + MPMX19_02786 0.36 +0.8 18,905 + MPMX19_02786 0.36 -0.4 18,905 + MPMX19_02786 0.36 -2.2 18,905 + MPMX19_02786 0.36 -0.2 18,905 + MPMX19_02786 0.36 -0.2 18,905 + MPMX19_02786 0.36 +0.7 18,905 + MPMX19_02786 0.36 -0.9 18,905 + MPMX19_02786 0.36 +0.3 18,905 + MPMX19_02786 0.36 -0.4 18,905 + MPMX19_02786 0.36 -0.7 18,905 + MPMX19_02786 0.36 -0.1 18,906 - MPMX19_02786 0.36 -1.0 18,906 - MPMX19_02786 0.36 -2.0 18,906 - MPMX19_02786 0.36 +1.5 18,906 - MPMX19_02786 0.36 +0.2 18,906 - MPMX19_02786 0.36 -0.6 18,906 - MPMX19_02786 0.36 -1.1 18,906 - MPMX19_02786 0.36 -0.2 18,906 - MPMX19_02786 0.36 -0.2 18,906 - MPMX19_02786 0.36 -1.5 18,906 - MPMX19_02786 0.36 +0.5 18,906 - MPMX19_02786 0.36 -0.7 18,906 - MPMX19_02786 0.36 +0.3 18,906 - MPMX19_02786 0.36 +0.8 18,906 - MPMX19_02786 0.36 -0.9 18,906 - MPMX19_02786 0.36 +0.8 18,906 - MPMX19_02786 0.36 -0.7 18,906 - MPMX19_02786 0.36 +0.5 18,906 - MPMX19_02786 0.36 -0.3 18,906 - MPMX19_02786 0.36 +0.0 18,906 - MPMX19_02786 0.36 -1.3 18,906 - MPMX19_02786 0.36 -0.1 18,906 - MPMX19_02786 0.36 -1.2 18,906 - MPMX19_02786 0.36 +0.2 18,906 - MPMX19_02786 0.36 -1.3 18,906 - MPMX19_02786 0.36 +1.3 18,906 - MPMX19_02786 0.36 -1.1 18,906 - MPMX19_02786 0.36 -2.1 18,906 - MPMX19_02786 0.36 +0.3 18,921 - MPMX19_02786 0.37 -1.1 18,986 + MPMX19_02786 0.44 +0.1 18,986 + MPMX19_02786 0.44 -0.4 18,986 + MPMX19_02786 0.44 -0.1 18,986 + MPMX19_02786 0.44 -0.6 18,987 - MPMX19_02786 0.44 -0.9 19,014 - MPMX19_02786 0.46 +0.1 19,223 + MPMX19_02786 0.66 +0.7 19,223 + MPMX19_02786 0.66 +1.0 19,223 + MPMX19_02786 0.66 +0.1 19,223 + MPMX19_02786 0.66 -0.4 19,223 + MPMX19_02786 0.66 +0.3 19,223 + MPMX19_02786 0.66 +0.3 19,223 + MPMX19_02786 0.66 -1.2 19,223 + MPMX19_02786 0.66 +0.8 19,223 + MPMX19_02786 0.66 -2.1 19,223 + MPMX19_02786 0.66 +0.5 19,223 + MPMX19_02786 0.66 -0.7 19,223 + MPMX19_02786 0.66 +0.3 19,224 - MPMX19_02786 0.66 +0.4 19,224 - MPMX19_02786 0.66 +0.9 19,224 - MPMX19_02786 0.66 -0.5 19,224 - MPMX19_02786 0.66 +1.0 19,224 - MPMX19_02786 0.66 +0.3 19,224 - MPMX19_02786 0.66 -0.9 19,224 - MPMX19_02786 0.66 -0.2 19,615 + -1.9 19,615 + +0.8 19,615 + -1.4 19,615 + +0.4 19,615 + +1.1 19,615 + -1.7 19,615 + +0.2 19,616 - -0.6 19,616 - -1.0 19,616 - +0.3 19,616 - +0.3 19,616 - -0.4 19,616 - +0.5 19,616 - -0.9 19,616 - +0.8 19,637 + -0.2 19,637 + -1.0 19,637 + -1.4 19,637 + -1.6 19,637 + -1.1 19,637 + +0.9 19,637 + -1.8 19,637 + -2.5 19,637 + -0.2 19,637 + +2.1 19,637 + -1.2 19,637 + -0.9 19,638 - -0.2 19,638 - -0.1 19,638 - -0.0 19,638 - -1.1 19,638 - -1.1 19,638 - +0.2 19,638 - -1.6 19,638 - -0.7 19,638 - +0.8 19,638 - +0.1 19,638 - -0.3 19,638 - -1.8 19,638 - +0.5 19,638 - -1.0 19,681 + -0.2 19,687 + -0.5 19,687 + -0.3 19,687 + -0.5 19,688 - -1.8 19,688 - +0.6 19,688 - -0.2 19,954 + MPMX19_02787 0.31 -0.7 19,954 + MPMX19_02787 0.31 -0.7 19,955 - MPMX19_02787 0.31 -0.6 19,955 - MPMX19_02787 0.31 +0.3 19,955 - MPMX19_02787 0.31 -0.3 19,955 - MPMX19_02787 0.31 +0.0 19,955 - MPMX19_02787 0.31 -0.5 19,955 - MPMX19_02787 0.31 +0.2 19,955 - MPMX19_02787 0.31 +0.3 20,536 + MPMX19_02787 0.80 -0.6 20,536 + MPMX19_02787 0.80 +1.3 20,536 + MPMX19_02787 0.80 +0.7 20,536 + MPMX19_02787 0.80 -0.1 20,741 - +1.4 20,741 - -0.2 20,847 + -1.1 20,847 + -0.5 20,847 + +0.2 20,847 + -1.2 20,847 + -0.5 20,847 + -1.4 20,847 + -1.6 20,847 + -1.2 20,847 + +0.1 20,847 + -0.1 20,847 + +0.1 20,847 + -0.5 20,848 - -0.1 20,848 - -1.7 20,848 - -0.5 20,848 - -1.1 20,848 - +0.4 20,988 + MPMX19_02788 0.26 -0.0 20,988 + MPMX19_02788 0.26 -1.2 21,084 + MPMX19_02788 0.38 -0.6 21,084 + MPMX19_02788 0.38 +0.5 21,085 - MPMX19_02788 0.38 -2.0 21,085 - MPMX19_02788 0.38 +0.6 21,085 - MPMX19_02788 0.38 +0.1 21,085 - MPMX19_02788 0.38 -0.2 21,085 - MPMX19_02788 0.38 +0.3 21,085 - MPMX19_02788 0.38 -1.2 21,085 - MPMX19_02788 0.38 +0.3 21,085 - MPMX19_02788 0.38 -1.1 21,085 - MPMX19_02788 0.38 +1.1 21,085 - MPMX19_02788 0.38 +0.5 21,215 - MPMX19_02788 0.55 -0.9 21,697 - -0.3 21,709 - +0.3
Or see this region's nucleotide sequence