Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02530 and MPMX19_02531 are separated by 5 nucleotides MPMX19_02531 and MPMX19_02532 overlap by 4 nucleotides MPMX19_02532 and MPMX19_02533 are separated by 7 nucleotides MPMX19_02533 and MPMX19_02534 are separated by 14 nucleotides MPMX19_02534 and MPMX19_02535 overlap by 1 nucleotides
MPMX19_02530: MPMX19_02530 - Heme exporter protein C, at 2,649,928 to 2,650,686
_02530
MPMX19_02531: MPMX19_02531 - hypothetical protein, at 2,650,692 to 2,650,937
_02531
MPMX19_02532: MPMX19_02532 - Cytochrome c-type biogenesis protein CcmE, at 2,650,934 to 2,651,398
_02532
MPMX19_02533: MPMX19_02533 - Cytochrome c-type biogenesis protein CcmF, at 2,651,406 to 2,653,412
_02533
MPMX19_02534: MPMX19_02534 - Thiol:disulfide interchange protein DsbE, at 2,653,427 to 2,653,996
_02534
MPMX19_02535: MPMX19_02535 - Cytochrome c-type biogenesis protein CcmH, at 2,653,996 to 2,654,478
_02535
Position (kb)
2651
2652
2653
2654 Strain fitness (log2 ratio)
-1
0
1 at 2650.684 kb on + strand at 2650.684 kb on + strand at 2650.886 kb on + strand, within MPMX19_02531 at 2650.886 kb on + strand, within MPMX19_02531 at 2650.886 kb on + strand, within MPMX19_02531 at 2650.886 kb on + strand, within MPMX19_02531 at 2650.886 kb on + strand, within MPMX19_02531 at 2650.958 kb on + strand at 2651.351 kb on + strand, within MPMX19_02532 at 2651.351 kb on + strand, within MPMX19_02532 at 2651.351 kb on + strand, within MPMX19_02532 at 2651.351 kb on + strand, within MPMX19_02532 at 2651.351 kb on + strand, within MPMX19_02532 at 2651.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 2,650,684 + -0.1 2,650,684 + -0.1 2,650,886 + MPMX19_02531 0.79 -0.8 2,650,886 + MPMX19_02531 0.79 +0.9 2,650,886 + MPMX19_02531 0.79 -0.5 2,650,886 + MPMX19_02531 0.79 -1.4 2,650,886 + MPMX19_02531 0.79 -1.1 2,650,958 + +0.3 2,651,351 + MPMX19_02532 0.90 -0.4 2,651,351 + MPMX19_02532 0.90 -0.1 2,651,351 + MPMX19_02532 0.90 +0.0 2,651,351 + MPMX19_02532 0.90 +0.7 2,651,351 + MPMX19_02532 0.90 -1.4 2,651,352 - -0.3
Or see this region's nucleotide sequence