Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02517 and MPMX19_02518 are separated by 149 nucleotides MPMX19_02518 and MPMX19_02519 are separated by 315 nucleotides MPMX19_02519 and MPMX19_02520 are separated by 113 nucleotides
MPMX19_02517: MPMX19_02517 - S-adenosylmethionine synthase, at 2,635,029 to 2,636,195
_02517
MPMX19_02518: MPMX19_02518 - tRNA (guanine-N(7)-)-methyltransferase, at 2,636,345 to 2,637,097
_02518
MPMX19_02519: MPMX19_02519 - Ribosome maturation factor RimP, at 2,637,413 to 2,637,862
_02519
MPMX19_02520: MPMX19_02520 - Transcription termination/antitermination protein NusA, at 2,637,976 to 2,639,547
_02520
Position (kb)
2636
2637
2638 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2636.270 kb on + strand at 2636.270 kb on + strand at 2636.270 kb on + strand at 2636.270 kb on + strand at 2636.270 kb on + strand at 2636.270 kb on + strand at 2636.271 kb on - strand at 2636.332 kb on + strand at 2636.332 kb on + strand at 2636.332 kb on + strand at 2636.332 kb on + strand at 2636.332 kb on + strand at 2636.332 kb on + strand at 2636.332 kb on + strand at 2636.332 kb on + strand at 2636.332 kb on + strand at 2636.332 kb on + strand at 2636.332 kb on + strand at 2636.333 kb on - strand at 2636.333 kb on - strand at 2636.941 kb on + strand, within MPMX19_02518 at 2636.941 kb on + strand, within MPMX19_02518 at 2636.941 kb on + strand, within MPMX19_02518 at 2636.941 kb on + strand, within MPMX19_02518 at 2636.941 kb on + strand, within MPMX19_02518 at 2636.941 kb on + strand, within MPMX19_02518 at 2636.941 kb on + strand, within MPMX19_02518 at 2636.941 kb on + strand, within MPMX19_02518 at 2636.941 kb on + strand, within MPMX19_02518 at 2636.941 kb on + strand, within MPMX19_02518 at 2636.941 kb on + strand, within MPMX19_02518 at 2636.941 kb on + strand, within MPMX19_02518 at 2636.941 kb on + strand, within MPMX19_02518 at 2636.941 kb on + strand, within MPMX19_02518 at 2636.941 kb on + strand, within MPMX19_02518 at 2636.941 kb on + strand, within MPMX19_02518 at 2636.942 kb on - strand, within MPMX19_02518 at 2636.942 kb on - strand, within MPMX19_02518 at 2636.942 kb on - strand, within MPMX19_02518 at 2636.942 kb on - strand, within MPMX19_02518 at 2636.942 kb on - strand, within MPMX19_02518 at 2636.942 kb on - strand, within MPMX19_02518 at 2636.942 kb on - strand, within MPMX19_02518 at 2636.942 kb on - strand, within MPMX19_02518 at 2636.942 kb on - strand, within MPMX19_02518 at 2636.942 kb on - strand, within MPMX19_02518 at 2636.942 kb on - strand, within MPMX19_02518 at 2636.942 kb on - strand, within MPMX19_02518 at 2636.942 kb on - strand, within MPMX19_02518 at 2636.942 kb on - strand, within MPMX19_02518 at 2637.026 kb on + strand at 2637.026 kb on + strand at 2637.026 kb on + strand at 2637.027 kb on - strand at 2637.027 kb on - strand at 2637.027 kb on - strand at 2637.027 kb on - strand at 2637.102 kb on + strand at 2637.102 kb on + strand at 2637.102 kb on + strand at 2637.103 kb on - strand at 2637.103 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 2,636,270 + -0.3 2,636,270 + +0.2 2,636,270 + -0.2 2,636,270 + -1.0 2,636,270 + +0.5 2,636,270 + +0.2 2,636,271 - -0.9 2,636,332 + +1.6 2,636,332 + +0.1 2,636,332 + +0.2 2,636,332 + -0.8 2,636,332 + +0.3 2,636,332 + -1.2 2,636,332 + +1.2 2,636,332 + -0.4 2,636,332 + -0.6 2,636,332 + +0.2 2,636,332 + +0.4 2,636,333 - -0.8 2,636,333 - -1.8 2,636,941 + MPMX19_02518 0.79 -1.1 2,636,941 + MPMX19_02518 0.79 -0.7 2,636,941 + MPMX19_02518 0.79 +0.6 2,636,941 + MPMX19_02518 0.79 +0.9 2,636,941 + MPMX19_02518 0.79 -0.3 2,636,941 + MPMX19_02518 0.79 -1.1 2,636,941 + MPMX19_02518 0.79 -0.6 2,636,941 + MPMX19_02518 0.79 -0.8 2,636,941 + MPMX19_02518 0.79 +0.7 2,636,941 + MPMX19_02518 0.79 -1.3 2,636,941 + MPMX19_02518 0.79 -1.6 2,636,941 + MPMX19_02518 0.79 -0.8 2,636,941 + MPMX19_02518 0.79 -1.9 2,636,941 + MPMX19_02518 0.79 -0.7 2,636,941 + MPMX19_02518 0.79 -1.3 2,636,941 + MPMX19_02518 0.79 -0.8 2,636,942 - MPMX19_02518 0.79 -0.6 2,636,942 - MPMX19_02518 0.79 -1.5 2,636,942 - MPMX19_02518 0.79 -1.8 2,636,942 - MPMX19_02518 0.79 -1.2 2,636,942 - MPMX19_02518 0.79 +0.4 2,636,942 - MPMX19_02518 0.79 +0.2 2,636,942 - MPMX19_02518 0.79 +0.5 2,636,942 - MPMX19_02518 0.79 +0.2 2,636,942 - MPMX19_02518 0.79 -1.1 2,636,942 - MPMX19_02518 0.79 +0.3 2,636,942 - MPMX19_02518 0.79 +0.2 2,636,942 - MPMX19_02518 0.79 -1.2 2,636,942 - MPMX19_02518 0.79 -0.8 2,636,942 - MPMX19_02518 0.79 -0.5 2,637,026 + +0.5 2,637,026 + -2.3 2,637,026 + +0.7 2,637,027 - +2.5 2,637,027 - -1.5 2,637,027 - +0.3 2,637,027 - -0.3 2,637,102 + -0.3 2,637,102 + -1.6 2,637,102 + -0.1 2,637,103 - -0.6 2,637,103 - +0.1
Or see this region's nucleotide sequence