Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02113 and MPMX19_02114 are separated by 281 nucleotides MPMX19_02114 and MPMX19_02115 are separated by 157 nucleotides MPMX19_02115 and MPMX19_02116 are separated by 140 nucleotides
MPMX19_02113: MPMX19_02113 - Dihydrolipoyl dehydrogenase 3, at 2,212,755 to 2,214,152
_02113
MPMX19_02114: MPMX19_02114 - hypothetical protein, at 2,214,434 to 2,214,592
_02114
MPMX19_02115: MPMX19_02115 - hypothetical protein, at 2,214,750 to 2,215,163
_02115
MPMX19_02116: MPMX19_02116 - Cold shock protein CspA, at 2,215,304 to 2,215,513
_02116
Position (kb)
2214
2215 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2214.242 kb on - strand at 2214.242 kb on - strand at 2214.242 kb on - strand at 2214.242 kb on - strand at 2214.242 kb on - strand at 2214.242 kb on - strand at 2214.376 kb on - strand at 2214.376 kb on - strand at 2214.590 kb on + strand at 2214.591 kb on - strand at 2214.591 kb on - strand at 2214.591 kb on - strand at 2214.591 kb on - strand at 2214.591 kb on - strand at 2214.591 kb on - strand at 2214.591 kb on - strand at 2214.591 kb on - strand at 2214.778 kb on + strand at 2214.778 kb on + strand at 2214.779 kb on - strand at 2214.779 kb on - strand at 2215.106 kb on + strand, within MPMX19_02115 at 2215.106 kb on + strand, within MPMX19_02115 at 2215.106 kb on + strand, within MPMX19_02115 at 2215.106 kb on + strand, within MPMX19_02115 at 2215.106 kb on + strand, within MPMX19_02115 at 2215.106 kb on + strand, within MPMX19_02115 at 2215.107 kb on - strand, within MPMX19_02115 at 2215.107 kb on - strand, within MPMX19_02115 at 2215.107 kb on - strand, within MPMX19_02115 at 2215.107 kb on - strand, within MPMX19_02115 at 2215.118 kb on + strand, within MPMX19_02115 at 2215.118 kb on + strand, within MPMX19_02115 at 2215.118 kb on + strand, within MPMX19_02115 at 2215.118 kb on + strand, within MPMX19_02115 at 2215.118 kb on + strand, within MPMX19_02115 at 2215.118 kb on + strand, within MPMX19_02115 at 2215.119 kb on - strand, within MPMX19_02115 at 2215.119 kb on - strand, within MPMX19_02115 at 2215.119 kb on - strand, within MPMX19_02115 at 2215.119 kb on - strand, within MPMX19_02115 at 2215.423 kb on + strand, within MPMX19_02116 at 2215.424 kb on - strand, within MPMX19_02116 at 2215.424 kb on - strand, within MPMX19_02116 at 2215.424 kb on - strand, within MPMX19_02116 at 2215.424 kb on - strand, within MPMX19_02116 at 2215.424 kb on - strand, within MPMX19_02116 at 2215.424 kb on - strand, within MPMX19_02116 at 2215.424 kb on - strand, within MPMX19_02116
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 2,214,242 - +1.0 2,214,242 - -0.2 2,214,242 - -1.9 2,214,242 - +1.2 2,214,242 - -0.9 2,214,242 - -1.6 2,214,376 - +2.1 2,214,376 - +0.6 2,214,590 + +0.3 2,214,591 - -0.3 2,214,591 - -1.4 2,214,591 - -1.2 2,214,591 - -0.4 2,214,591 - +0.3 2,214,591 - +0.1 2,214,591 - +0.3 2,214,591 - +0.0 2,214,778 + -0.2 2,214,778 + -1.6 2,214,779 - +0.3 2,214,779 - -1.4 2,215,106 + MPMX19_02115 0.86 +0.6 2,215,106 + MPMX19_02115 0.86 -0.0 2,215,106 + MPMX19_02115 0.86 -1.1 2,215,106 + MPMX19_02115 0.86 -1.3 2,215,106 + MPMX19_02115 0.86 +0.6 2,215,106 + MPMX19_02115 0.86 -1.3 2,215,107 - MPMX19_02115 0.86 -1.6 2,215,107 - MPMX19_02115 0.86 -0.7 2,215,107 - MPMX19_02115 0.86 -0.7 2,215,107 - MPMX19_02115 0.86 -1.8 2,215,118 + MPMX19_02115 0.89 +0.7 2,215,118 + MPMX19_02115 0.89 +1.8 2,215,118 + MPMX19_02115 0.89 +0.3 2,215,118 + MPMX19_02115 0.89 +1.7 2,215,118 + MPMX19_02115 0.89 -2.0 2,215,118 + MPMX19_02115 0.89 -0.4 2,215,119 - MPMX19_02115 0.89 +1.3 2,215,119 - MPMX19_02115 0.89 -0.2 2,215,119 - MPMX19_02115 0.89 +0.6 2,215,119 - MPMX19_02115 0.89 -0.7 2,215,423 + MPMX19_02116 0.57 +0.6 2,215,424 - MPMX19_02116 0.57 +0.1 2,215,424 - MPMX19_02116 0.57 +0.0 2,215,424 - MPMX19_02116 0.57 -2.2 2,215,424 - MPMX19_02116 0.57 -1.4 2,215,424 - MPMX19_02116 0.57 -1.4 2,215,424 - MPMX19_02116 0.57 +0.0 2,215,424 - MPMX19_02116 0.57 -1.1
Or see this region's nucleotide sequence