Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02084

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02083 and MPMX19_02084 overlap by 4 nucleotidesMPMX19_02084 and MPMX19_02085 are separated by 343 nucleotidesMPMX19_02085 and MPMX19_02086 are separated by 14 nucleotidesMPMX19_02086 and MPMX19_02087 are separated by 34 nucleotides MPMX19_02083: MPMX19_02083 - Dihydroorotate dehydrogenase (quinone), at 2,181,752 to 2,182,825 _02083 MPMX19_02084: MPMX19_02084 - hypothetical protein, at 2,182,822 to 2,183,196 _02084 MPMX19_02085: MPMX19_02085 - hypothetical protein, at 2,183,540 to 2,183,758 _02085 MPMX19_02086: MPMX19_02086 - hypothetical protein, at 2,183,773 to 2,184,093 _02086 MPMX19_02087: MPMX19_02087 - hypothetical protein, at 2,184,128 to 2,185,654 _02087 Position (kb) 2182 2183 2184Strain fitness (log2 ratio) -2 -1 0 1 2at 2182.318 kb on - strand, within MPMX19_02083at 2182.356 kb on + strand, within MPMX19_02083at 2182.356 kb on + strand, within MPMX19_02083at 2182.813 kb on - strandat 2182.937 kb on + strand, within MPMX19_02084at 2182.937 kb on + strand, within MPMX19_02084at 2182.938 kb on - strand, within MPMX19_02084at 2182.938 kb on - strand, within MPMX19_02084at 2182.938 kb on - strand, within MPMX19_02084at 2183.262 kb on - strandat 2183.371 kb on - strandat 2183.371 kb on - strandat 2183.420 kb on + strandat 2183.420 kb on + strandat 2183.420 kb on + strandat 2183.420 kb on + strandat 2183.420 kb on + strandat 2183.421 kb on - strandat 2183.421 kb on - strandat 2183.426 kb on - strandat 2183.729 kb on + strand, within MPMX19_02085at 2183.729 kb on + strand, within MPMX19_02085at 2183.729 kb on + strand, within MPMX19_02085at 2183.729 kb on + strand, within MPMX19_02085at 2183.729 kb on + strand, within MPMX19_02085at 2183.729 kb on + strand, within MPMX19_02085at 2183.729 kb on + strand, within MPMX19_02085at 2183.730 kb on - strand, within MPMX19_02085at 2183.730 kb on - strand, within MPMX19_02085at 2183.730 kb on - strand, within MPMX19_02085at 2183.730 kb on - strand, within MPMX19_02085at 2183.730 kb on - strand, within MPMX19_02085at 2183.824 kb on + strand, within MPMX19_02086at 2183.824 kb on + strand, within MPMX19_02086at 2183.824 kb on + strand, within MPMX19_02086at 2183.825 kb on - strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.885 kb on + strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.886 kb on - strand, within MPMX19_02086at 2183.909 kb on + strand, within MPMX19_02086at 2183.909 kb on + strand, within MPMX19_02086at 2183.909 kb on + strand, within MPMX19_02086at 2183.909 kb on + strand, within MPMX19_02086at 2183.909 kb on + strand, within MPMX19_02086at 2183.909 kb on + strand, within MPMX19_02086at 2183.909 kb on + strand, within MPMX19_02086at 2183.909 kb on + strand, within MPMX19_02086at 2183.909 kb on + strand, within MPMX19_02086at 2183.910 kb on - strand, within MPMX19_02086at 2183.910 kb on - strand, within MPMX19_02086at 2183.910 kb on - strand, within MPMX19_02086at 2183.910 kb on - strand, within MPMX19_02086at 2183.910 kb on - strand, within MPMX19_02086at 2183.910 kb on - strand, within MPMX19_02086at 2183.910 kb on - strand, within MPMX19_02086at 2183.910 kb on - strand, within MPMX19_02086at 2183.910 kb on - strand, within MPMX19_02086at 2183.910 kb on - strand, within MPMX19_02086at 2183.910 kb on - strand, within MPMX19_02086

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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2,182,318 - MPMX19_02083 0.53 -1.2
2,182,356 + MPMX19_02083 0.56 -0.3
2,182,356 + MPMX19_02083 0.56 -1.6
2,182,813 - +1.1
2,182,937 + MPMX19_02084 0.31 -0.6
2,182,937 + MPMX19_02084 0.31 -1.3
2,182,938 - MPMX19_02084 0.31 -0.2
2,182,938 - MPMX19_02084 0.31 -1.9
2,182,938 - MPMX19_02084 0.31 +0.1
2,183,262 - -0.5
2,183,371 - -1.6
2,183,371 - +0.0
2,183,420 + +0.1
2,183,420 + -1.2
2,183,420 + -1.3
2,183,420 + +0.5
2,183,420 + +0.6
2,183,421 - -1.0
2,183,421 - -1.0
2,183,426 - -0.8
2,183,729 + MPMX19_02085 0.86 +0.3
2,183,729 + MPMX19_02085 0.86 -1.9
2,183,729 + MPMX19_02085 0.86 -1.2
2,183,729 + MPMX19_02085 0.86 -0.9
2,183,729 + MPMX19_02085 0.86 -0.5
2,183,729 + MPMX19_02085 0.86 +0.2
2,183,729 + MPMX19_02085 0.86 -1.1
2,183,730 - MPMX19_02085 0.87 -0.1
2,183,730 - MPMX19_02085 0.87 -1.5
2,183,730 - MPMX19_02085 0.87 -1.2
2,183,730 - MPMX19_02085 0.87 -0.1
2,183,730 - MPMX19_02085 0.87 +1.1
2,183,824 + MPMX19_02086 0.16 -1.9
2,183,824 + MPMX19_02086 0.16 -0.3
2,183,824 + MPMX19_02086 0.16 -1.1
2,183,825 - MPMX19_02086 0.16 -1.5
2,183,885 + MPMX19_02086 0.35 +0.1
2,183,885 + MPMX19_02086 0.35 -1.3
2,183,885 + MPMX19_02086 0.35 -0.7
2,183,885 + MPMX19_02086 0.35 +0.2
2,183,885 + MPMX19_02086 0.35 +0.5
2,183,885 + MPMX19_02086 0.35 +0.2
2,183,885 + MPMX19_02086 0.35 -0.7
2,183,885 + MPMX19_02086 0.35 -0.1
2,183,885 + MPMX19_02086 0.35 -0.1
2,183,885 + MPMX19_02086 0.35 -0.2
2,183,885 + MPMX19_02086 0.35 -0.5
2,183,885 + MPMX19_02086 0.35 -1.6
2,183,885 + MPMX19_02086 0.35 +0.6
2,183,885 + MPMX19_02086 0.35 -0.8
2,183,885 + MPMX19_02086 0.35 +0.7
2,183,885 + MPMX19_02086 0.35 +2.7
2,183,885 + MPMX19_02086 0.35 -0.7
2,183,885 + MPMX19_02086 0.35 -0.3
2,183,885 + MPMX19_02086 0.35 -2.2
2,183,885 + MPMX19_02086 0.35 +1.9
2,183,885 + MPMX19_02086 0.35 -0.0
2,183,885 + MPMX19_02086 0.35 +1.3
2,183,885 + MPMX19_02086 0.35 -0.5
2,183,885 + MPMX19_02086 0.35 +1.4
2,183,885 + MPMX19_02086 0.35 -1.2
2,183,885 + MPMX19_02086 0.35 -1.2
2,183,885 + MPMX19_02086 0.35 -2.0
2,183,885 + MPMX19_02086 0.35 -0.7
2,183,885 + MPMX19_02086 0.35 -0.2
2,183,885 + MPMX19_02086 0.35 -0.8
2,183,885 + MPMX19_02086 0.35 -1.6
2,183,885 + MPMX19_02086 0.35 -0.3
2,183,885 + MPMX19_02086 0.35 -0.8
2,183,886 - MPMX19_02086 0.35 -2.2
2,183,886 - MPMX19_02086 0.35 -0.4
2,183,886 - MPMX19_02086 0.35 -0.9
2,183,886 - MPMX19_02086 0.35 -0.0
2,183,886 - MPMX19_02086 0.35 -0.2
2,183,886 - MPMX19_02086 0.35 -0.3
2,183,886 - MPMX19_02086 0.35 -0.5
2,183,886 - MPMX19_02086 0.35 -0.7
2,183,886 - MPMX19_02086 0.35 -0.3
2,183,886 - MPMX19_02086 0.35 -0.4
2,183,886 - MPMX19_02086 0.35 +0.2
2,183,886 - MPMX19_02086 0.35 -2.3
2,183,886 - MPMX19_02086 0.35 -0.4
2,183,886 - MPMX19_02086 0.35 -1.7
2,183,886 - MPMX19_02086 0.35 -1.0
2,183,886 - MPMX19_02086 0.35 +0.3
2,183,886 - MPMX19_02086 0.35 +1.0
2,183,886 - MPMX19_02086 0.35 -1.6
2,183,886 - MPMX19_02086 0.35 -1.9
2,183,886 - MPMX19_02086 0.35 -0.1
2,183,886 - MPMX19_02086 0.35 +0.3
2,183,886 - MPMX19_02086 0.35 +0.2
2,183,886 - MPMX19_02086 0.35 -0.2
2,183,886 - MPMX19_02086 0.35 +0.4
2,183,886 - MPMX19_02086 0.35 -0.9
2,183,886 - MPMX19_02086 0.35 +2.1
2,183,886 - MPMX19_02086 0.35 +0.1
2,183,886 - MPMX19_02086 0.35 +0.4
2,183,886 - MPMX19_02086 0.35 +0.1
2,183,886 - MPMX19_02086 0.35 +0.3
2,183,886 - MPMX19_02086 0.35 +0.1
2,183,886 - MPMX19_02086 0.35 -1.7
2,183,886 - MPMX19_02086 0.35 +0.0
2,183,909 + MPMX19_02086 0.42 -1.1
2,183,909 + MPMX19_02086 0.42 -1.3
2,183,909 + MPMX19_02086 0.42 -0.5
2,183,909 + MPMX19_02086 0.42 +0.3
2,183,909 + MPMX19_02086 0.42 -1.0
2,183,909 + MPMX19_02086 0.42 +0.5
2,183,909 + MPMX19_02086 0.42 -0.5
2,183,909 + MPMX19_02086 0.42 -0.9
2,183,909 + MPMX19_02086 0.42 -0.9
2,183,910 - MPMX19_02086 0.43 -0.3
2,183,910 - MPMX19_02086 0.43 +0.0
2,183,910 - MPMX19_02086 0.43 +0.4
2,183,910 - MPMX19_02086 0.43 +0.4
2,183,910 - MPMX19_02086 0.43 -0.7
2,183,910 - MPMX19_02086 0.43 -1.0
2,183,910 - MPMX19_02086 0.43 +0.3
2,183,910 - MPMX19_02086 0.43 -0.7
2,183,910 - MPMX19_02086 0.43 -0.3
2,183,910 - MPMX19_02086 0.43 -0.3
2,183,910 - MPMX19_02086 0.43 +0.1

Or see this region's nucleotide sequence