Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01879

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_01877 and MPMX19_01878 are separated by 133 nucleotidesMPMX19_01878 and MPMX19_01879 are separated by 192 nucleotidesMPMX19_01879 and MPMX19_01880 are separated by 83 nucleotides MPMX19_01877: MPMX19_01877 - hypothetical protein, at 1,957,654 to 1,958,154 _01877 MPMX19_01878: MPMX19_01878 - hypothetical protein, at 1,958,288 to 1,958,746 _01878 MPMX19_01879: MPMX19_01879 - hypothetical protein, at 1,958,939 to 1,959,526 _01879 MPMX19_01880: MPMX19_01880 - hypothetical protein, at 1,959,610 to 1,960,830 _01880 Position (kb) 1958 1959 1960Strain fitness (log2 ratio) -2 -1 0 1at 1958.152 kb on + strandat 1958.152 kb on + strandat 1958.152 kb on + strandat 1958.152 kb on + strandat 1958.152 kb on + strandat 1958.152 kb on + strandat 1958.153 kb on - strandat 1958.192 kb on + strandat 1958.193 kb on - strandat 1958.304 kb on + strandat 1958.304 kb on + strandat 1958.305 kb on - strandat 1958.305 kb on - strandat 1958.799 kb on - strandat 1958.799 kb on - strandat 1958.827 kb on + strandat 1958.827 kb on + strandat 1958.827 kb on + strandat 1958.856 kb on + strandat 1958.856 kb on + strandat 1958.856 kb on + strandat 1958.856 kb on + strandat 1958.856 kb on + strandat 1958.856 kb on + strandat 1958.856 kb on + strandat 1958.856 kb on + strandat 1958.856 kb on + strandat 1958.858 kb on + strandat 1958.858 kb on + strandat 1958.859 kb on - strandat 1958.859 kb on - strandat 1958.875 kb on + strandat 1958.875 kb on + strandat 1959.028 kb on - strand, within MPMX19_01879at 1959.254 kb on + strand, within MPMX19_01879at 1959.782 kb on + strand, within MPMX19_01880at 1959.782 kb on + strand, within MPMX19_01880at 1959.782 kb on + strand, within MPMX19_01880at 1959.782 kb on + strand, within MPMX19_01880at 1959.782 kb on + strand, within MPMX19_01880at 1959.782 kb on + strand, within MPMX19_01880at 1959.782 kb on + strand, within MPMX19_01880at 1959.782 kb on + strand, within MPMX19_01880at 1959.782 kb on + strand, within MPMX19_01880at 1959.782 kb on + strand, within MPMX19_01880at 1959.782 kb on + strand, within MPMX19_01880at 1959.782 kb on + strand, within MPMX19_01880at 1959.782 kb on + strand, within MPMX19_01880at 1959.783 kb on - strand, within MPMX19_01880at 1959.783 kb on - strand, within MPMX19_01880at 1959.783 kb on - strand, within MPMX19_01880at 1959.783 kb on - strand, within MPMX19_01880at 1959.783 kb on - strand, within MPMX19_01880at 1959.783 kb on - strand, within MPMX19_01880at 1959.783 kb on - strand, within MPMX19_01880at 1959.809 kb on + strand, within MPMX19_01880at 1959.809 kb on + strand, within MPMX19_01880at 1959.809 kb on + strand, within MPMX19_01880at 1959.809 kb on + strand, within MPMX19_01880at 1959.810 kb on - strand, within MPMX19_01880at 1959.810 kb on - strand, within MPMX19_01880at 1959.810 kb on - strand, within MPMX19_01880at 1959.905 kb on + strand, within MPMX19_01880at 1959.905 kb on + strand, within MPMX19_01880at 1959.905 kb on + strand, within MPMX19_01880at 1959.905 kb on + strand, within MPMX19_01880at 1959.905 kb on + strand, within MPMX19_01880at 1959.905 kb on + strand, within MPMX19_01880at 1959.906 kb on - strand, within MPMX19_01880at 1959.906 kb on - strand, within MPMX19_01880at 1959.906 kb on - strand, within MPMX19_01880at 1959.906 kb on - strand, within MPMX19_01880at 1959.906 kb on - strand, within MPMX19_01880at 1959.906 kb on - strand, within MPMX19_01880at 1959.906 kb on - strand, within MPMX19_01880at 1959.906 kb on - strand, within MPMX19_01880at 1959.965 kb on + strand, within MPMX19_01880at 1959.965 kb on + strand, within MPMX19_01880at 1959.965 kb on + strand, within MPMX19_01880at 1959.965 kb on + strand, within MPMX19_01880at 1959.965 kb on + strand, within MPMX19_01880at 1959.966 kb on - strand, within MPMX19_01880at 1959.966 kb on - strand, within MPMX19_01880at 1959.966 kb on - strand, within MPMX19_01880at 1960.130 kb on + strand, within MPMX19_01880at 1960.130 kb on + strand, within MPMX19_01880at 1960.130 kb on + strand, within MPMX19_01880at 1960.130 kb on + strand, within MPMX19_01880at 1960.130 kb on + strand, within MPMX19_01880at 1960.130 kb on + strand, within MPMX19_01880at 1960.130 kb on + strand, within MPMX19_01880at 1960.130 kb on + strand, within MPMX19_01880at 1960.130 kb on + strand, within MPMX19_01880at 1960.130 kb on + strand, within MPMX19_01880at 1960.130 kb on + strand, within MPMX19_01880at 1960.130 kb on + strand, within MPMX19_01880at 1960.130 kb on + strand, within MPMX19_01880at 1960.130 kb on + strand, within MPMX19_01880at 1960.130 kb on + strand, within MPMX19_01880at 1960.130 kb on + strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.131 kb on - strand, within MPMX19_01880at 1960.136 kb on + strand, within MPMX19_01880at 1960.136 kb on + strand, within MPMX19_01880at 1960.136 kb on + strand, within MPMX19_01880at 1960.136 kb on + strand, within MPMX19_01880at 1960.136 kb on + strand, within MPMX19_01880at 1960.137 kb on - strand, within MPMX19_01880at 1960.137 kb on - strand, within MPMX19_01880at 1960.520 kb on + strand, within MPMX19_01880at 1960.520 kb on + strand, within MPMX19_01880at 1960.520 kb on + strand, within MPMX19_01880at 1960.521 kb on - strand, within MPMX19_01880at 1960.521 kb on - strand, within MPMX19_01880at 1960.521 kb on - strand, within MPMX19_01880at 1960.521 kb on - strand, within MPMX19_01880at 1960.521 kb on - strand, within MPMX19_01880at 1960.521 kb on - strand, within MPMX19_01880at 1960.521 kb on - strand, within MPMX19_01880at 1960.521 kb on - strand, within MPMX19_01880

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
1,958,152 + +0.3
1,958,152 + -1.1
1,958,152 + -0.2
1,958,152 + +0.1
1,958,152 + -0.2
1,958,152 + -0.8
1,958,153 - -0.9
1,958,192 + -1.6
1,958,193 - -0.7
1,958,304 + -1.5
1,958,304 + +0.1
1,958,305 - -1.9
1,958,305 - +0.1
1,958,799 - -1.2
1,958,799 - -2.0
1,958,827 + -0.6
1,958,827 + -0.8
1,958,827 + -0.7
1,958,856 + +1.1
1,958,856 + -0.5
1,958,856 + -1.5
1,958,856 + -1.2
1,958,856 + -0.9
1,958,856 + -0.6
1,958,856 + -1.3
1,958,856 + +1.3
1,958,856 + -0.2
1,958,858 + -1.9
1,958,858 + +1.1
1,958,859 - -1.7
1,958,859 - +0.3
1,958,875 + -0.2
1,958,875 + -0.6
1,959,028 - MPMX19_01879 0.15 -1.1
1,959,254 + MPMX19_01879 0.54 -0.8
1,959,782 + MPMX19_01880 0.14 -0.3
1,959,782 + MPMX19_01880 0.14 -1.4
1,959,782 + MPMX19_01880 0.14 -0.9
1,959,782 + MPMX19_01880 0.14 -1.0
1,959,782 + MPMX19_01880 0.14 -1.8
1,959,782 + MPMX19_01880 0.14 +0.1
1,959,782 + MPMX19_01880 0.14 -0.1
1,959,782 + MPMX19_01880 0.14 -0.9
1,959,782 + MPMX19_01880 0.14 -0.5
1,959,782 + MPMX19_01880 0.14 +0.6
1,959,782 + MPMX19_01880 0.14 +0.3
1,959,782 + MPMX19_01880 0.14 -0.2
1,959,782 + MPMX19_01880 0.14 +1.3
1,959,783 - MPMX19_01880 0.14 -0.7
1,959,783 - MPMX19_01880 0.14 +0.9
1,959,783 - MPMX19_01880 0.14 -0.9
1,959,783 - MPMX19_01880 0.14 -1.5
1,959,783 - MPMX19_01880 0.14 -0.4
1,959,783 - MPMX19_01880 0.14 -2.1
1,959,783 - MPMX19_01880 0.14 -2.2
1,959,809 + MPMX19_01880 0.16 -1.2
1,959,809 + MPMX19_01880 0.16 -1.8
1,959,809 + MPMX19_01880 0.16 -0.1
1,959,809 + MPMX19_01880 0.16 -1.6
1,959,810 - MPMX19_01880 0.16 -0.9
1,959,810 - MPMX19_01880 0.16 +1.5
1,959,810 - MPMX19_01880 0.16 -0.8
1,959,905 + MPMX19_01880 0.24 +1.0
1,959,905 + MPMX19_01880 0.24 +0.4
1,959,905 + MPMX19_01880 0.24 +0.1
1,959,905 + MPMX19_01880 0.24 -1.5
1,959,905 + MPMX19_01880 0.24 -0.5
1,959,905 + MPMX19_01880 0.24 +0.9
1,959,906 - MPMX19_01880 0.24 -1.4
1,959,906 - MPMX19_01880 0.24 -1.2
1,959,906 - MPMX19_01880 0.24 -2.2
1,959,906 - MPMX19_01880 0.24 -1.1
1,959,906 - MPMX19_01880 0.24 -1.2
1,959,906 - MPMX19_01880 0.24 -1.1
1,959,906 - MPMX19_01880 0.24 -2.5
1,959,906 - MPMX19_01880 0.24 +0.2
1,959,965 + MPMX19_01880 0.29 -0.7
1,959,965 + MPMX19_01880 0.29 +0.3
1,959,965 + MPMX19_01880 0.29 -0.4
1,959,965 + MPMX19_01880 0.29 -1.2
1,959,965 + MPMX19_01880 0.29 +0.9
1,959,966 - MPMX19_01880 0.29 -0.8
1,959,966 - MPMX19_01880 0.29 +0.8
1,959,966 - MPMX19_01880 0.29 -1.5
1,960,130 + MPMX19_01880 0.43 +0.7
1,960,130 + MPMX19_01880 0.43 -1.7
1,960,130 + MPMX19_01880 0.43 +0.4
1,960,130 + MPMX19_01880 0.43 -2.4
1,960,130 + MPMX19_01880 0.43 -1.5
1,960,130 + MPMX19_01880 0.43 -1.5
1,960,130 + MPMX19_01880 0.43 +0.1
1,960,130 + MPMX19_01880 0.43 -1.2
1,960,130 + MPMX19_01880 0.43 -1.5
1,960,130 + MPMX19_01880 0.43 -1.7
1,960,130 + MPMX19_01880 0.43 -0.6
1,960,130 + MPMX19_01880 0.43 +0.5
1,960,130 + MPMX19_01880 0.43 +0.1
1,960,130 + MPMX19_01880 0.43 -0.4
1,960,130 + MPMX19_01880 0.43 -0.1
1,960,130 + MPMX19_01880 0.43 +1.1
1,960,131 - MPMX19_01880 0.43 -0.7
1,960,131 - MPMX19_01880 0.43 -1.5
1,960,131 - MPMX19_01880 0.43 -0.5
1,960,131 - MPMX19_01880 0.43 +0.8
1,960,131 - MPMX19_01880 0.43 +0.4
1,960,131 - MPMX19_01880 0.43 +0.3
1,960,131 - MPMX19_01880 0.43 +0.8
1,960,131 - MPMX19_01880 0.43 -0.0
1,960,131 - MPMX19_01880 0.43 -1.9
1,960,131 - MPMX19_01880 0.43 -1.4
1,960,131 - MPMX19_01880 0.43 +1.1
1,960,131 - MPMX19_01880 0.43 +0.5
1,960,131 - MPMX19_01880 0.43 -0.1
1,960,131 - MPMX19_01880 0.43 +0.7
1,960,131 - MPMX19_01880 0.43 -0.1
1,960,131 - MPMX19_01880 0.43 -0.0
1,960,131 - MPMX19_01880 0.43 -1.1
1,960,131 - MPMX19_01880 0.43 -0.0
1,960,131 - MPMX19_01880 0.43 -1.1
1,960,131 - MPMX19_01880 0.43 -1.1
1,960,131 - MPMX19_01880 0.43 -0.2
1,960,131 - MPMX19_01880 0.43 -1.1
1,960,131 - MPMX19_01880 0.43 +0.5
1,960,136 + MPMX19_01880 0.43 -0.7
1,960,136 + MPMX19_01880 0.43 +0.5
1,960,136 + MPMX19_01880 0.43 -1.6
1,960,136 + MPMX19_01880 0.43 -0.4
1,960,136 + MPMX19_01880 0.43 +1.1
1,960,137 - MPMX19_01880 0.43 -0.1
1,960,137 - MPMX19_01880 0.43 +0.1
1,960,520 + MPMX19_01880 0.75 -0.6
1,960,520 + MPMX19_01880 0.75 -1.4
1,960,520 + MPMX19_01880 0.75 +1.5
1,960,521 - MPMX19_01880 0.75 +0.1
1,960,521 - MPMX19_01880 0.75 +0.2
1,960,521 - MPMX19_01880 0.75 -0.9
1,960,521 - MPMX19_01880 0.75 +0.2
1,960,521 - MPMX19_01880 0.75 -0.9
1,960,521 - MPMX19_01880 0.75 -1.1
1,960,521 - MPMX19_01880 0.75 -0.7
1,960,521 - MPMX19_01880 0.75 +0.2

Or see this region's nucleotide sequence