Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01602

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01601 and MPMX19_01602 are separated by 8 nucleotidesMPMX19_01602 and MPMX19_01603 are separated by 126 nucleotides MPMX19_01601: MPMX19_01601 - DNA repair protein RecN, at 1,677,524 to 1,679,200 _01601 MPMX19_01602: MPMX19_01602 - Outer membrane protein assembly factor BamD, at 1,679,209 to 1,680,024 _01602 MPMX19_01603: MPMX19_01603 - hypothetical protein, at 1,680,151 to 1,680,876 _01603 Position (kb) 1679 1680 1681Strain fitness (log2 ratio) -2 -1 0 1 2at 1678.500 kb on + strand, within MPMX19_01601at 1678.500 kb on + strand, within MPMX19_01601at 1678.500 kb on + strand, within MPMX19_01601at 1678.500 kb on + strand, within MPMX19_01601at 1678.501 kb on - strand, within MPMX19_01601at 1678.501 kb on - strand, within MPMX19_01601at 1678.501 kb on - strand, within MPMX19_01601at 1678.501 kb on - strand, within MPMX19_01601at 1678.626 kb on + strand, within MPMX19_01601at 1678.626 kb on + strand, within MPMX19_01601at 1678.626 kb on + strand, within MPMX19_01601at 1678.626 kb on + strand, within MPMX19_01601at 1678.626 kb on + strand, within MPMX19_01601at 1678.626 kb on + strand, within MPMX19_01601at 1678.626 kb on + strand, within MPMX19_01601at 1678.626 kb on + strand, within MPMX19_01601at 1678.626 kb on + strand, within MPMX19_01601at 1678.626 kb on + strand, within MPMX19_01601at 1678.626 kb on + strand, within MPMX19_01601at 1678.627 kb on - strand, within MPMX19_01601at 1678.627 kb on - strand, within MPMX19_01601at 1678.627 kb on - strand, within MPMX19_01601at 1678.627 kb on - strand, within MPMX19_01601at 1678.627 kb on - strand, within MPMX19_01601at 1678.627 kb on - strand, within MPMX19_01601at 1678.627 kb on - strand, within MPMX19_01601at 1678.627 kb on - strand, within MPMX19_01601at 1678.627 kb on - strand, within MPMX19_01601at 1678.627 kb on - strand, within MPMX19_01601at 1678.627 kb on - strand, within MPMX19_01601at 1678.746 kb on + strand, within MPMX19_01601at 1678.746 kb on + strand, within MPMX19_01601at 1678.746 kb on + strand, within MPMX19_01601at 1678.746 kb on + strand, within MPMX19_01601at 1678.746 kb on + strand, within MPMX19_01601at 1678.746 kb on + strand, within MPMX19_01601at 1678.747 kb on - strand, within MPMX19_01601at 1678.960 kb on + strand, within MPMX19_01601at 1679.210 kb on + strandat 1679.211 kb on - strandat 1679.211 kb on - strandat 1679.211 kb on - strandat 1679.211 kb on - strandat 1679.291 kb on + strand, within MPMX19_01602at 1680.060 kb on - strandat 1680.060 kb on - strandat 1680.060 kb on - strandat 1680.060 kb on - strandat 1680.060 kb on - strandat 1680.060 kb on - strandat 1680.060 kb on - strandat 1680.108 kb on + strandat 1680.109 kb on - strandat 1680.152 kb on + strandat 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.395 kb on + strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.396 kb on - strand, within MPMX19_01603at 1680.443 kb on + strand, within MPMX19_01603at 1680.444 kb on - strand, within MPMX19_01603

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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1,678,500 + MPMX19_01601 0.58 +1.4
1,678,500 + MPMX19_01601 0.58 +0.5
1,678,500 + MPMX19_01601 0.58 -0.1
1,678,500 + MPMX19_01601 0.58 -0.1
1,678,501 - MPMX19_01601 0.58 -0.2
1,678,501 - MPMX19_01601 0.58 +0.2
1,678,501 - MPMX19_01601 0.58 +0.3
1,678,501 - MPMX19_01601 0.58 -0.7
1,678,626 + MPMX19_01601 0.66 +0.3
1,678,626 + MPMX19_01601 0.66 +0.5
1,678,626 + MPMX19_01601 0.66 +1.1
1,678,626 + MPMX19_01601 0.66 +0.9
1,678,626 + MPMX19_01601 0.66 +0.8
1,678,626 + MPMX19_01601 0.66 +0.3
1,678,626 + MPMX19_01601 0.66 +2.5
1,678,626 + MPMX19_01601 0.66 +0.5
1,678,626 + MPMX19_01601 0.66 -0.4
1,678,626 + MPMX19_01601 0.66 -0.2
1,678,626 + MPMX19_01601 0.66 -0.7
1,678,627 - MPMX19_01601 0.66 -1.4
1,678,627 - MPMX19_01601 0.66 -1.1
1,678,627 - MPMX19_01601 0.66 +0.2
1,678,627 - MPMX19_01601 0.66 -0.7
1,678,627 - MPMX19_01601 0.66 +0.6
1,678,627 - MPMX19_01601 0.66 -0.9
1,678,627 - MPMX19_01601 0.66 +0.1
1,678,627 - MPMX19_01601 0.66 -1.1
1,678,627 - MPMX19_01601 0.66 +1.1
1,678,627 - MPMX19_01601 0.66 +0.1
1,678,627 - MPMX19_01601 0.66 +0.9
1,678,746 + MPMX19_01601 0.73 -1.0
1,678,746 + MPMX19_01601 0.73 -1.9
1,678,746 + MPMX19_01601 0.73 +0.6
1,678,746 + MPMX19_01601 0.73 -0.7
1,678,746 + MPMX19_01601 0.73 -0.5
1,678,746 + MPMX19_01601 0.73 -1.2
1,678,747 - MPMX19_01601 0.73 -1.0
1,678,960 + MPMX19_01601 0.86 -2.2
1,679,210 + -0.7
1,679,211 - +0.1
1,679,211 - -1.8
1,679,211 - -0.9
1,679,211 - -0.5
1,679,291 + MPMX19_01602 0.10 -0.5
1,680,060 - +0.2
1,680,060 - +1.4
1,680,060 - -0.2
1,680,060 - +0.7
1,680,060 - -1.4
1,680,060 - +1.1
1,680,060 - -1.5
1,680,108 + +0.3
1,680,109 - -0.9
1,680,152 + +1.1
1,680,395 + MPMX19_01603 0.34 -0.7
1,680,395 + MPMX19_01603 0.34 +0.5
1,680,395 + MPMX19_01603 0.34 +1.1
1,680,395 + MPMX19_01603 0.34 -1.2
1,680,395 + MPMX19_01603 0.34 -0.6
1,680,395 + MPMX19_01603 0.34 +0.1
1,680,395 + MPMX19_01603 0.34 -1.1
1,680,395 + MPMX19_01603 0.34 -0.7
1,680,395 + MPMX19_01603 0.34 -0.6
1,680,395 + MPMX19_01603 0.34 +0.5
1,680,395 + MPMX19_01603 0.34 +1.5
1,680,395 + MPMX19_01603 0.34 -0.2
1,680,395 + MPMX19_01603 0.34 -0.7
1,680,395 + MPMX19_01603 0.34 -0.1
1,680,395 + MPMX19_01603 0.34 +0.7
1,680,395 + MPMX19_01603 0.34 -1.6
1,680,395 + MPMX19_01603 0.34 +0.0
1,680,395 + MPMX19_01603 0.34 -1.0
1,680,395 + MPMX19_01603 0.34 -0.6
1,680,395 + MPMX19_01603 0.34 -0.4
1,680,395 + MPMX19_01603 0.34 -0.1
1,680,395 + MPMX19_01603 0.34 -0.9
1,680,395 + MPMX19_01603 0.34 -1.3
1,680,395 + MPMX19_01603 0.34 -0.2
1,680,395 + MPMX19_01603 0.34 +1.5
1,680,395 + MPMX19_01603 0.34 +0.2
1,680,395 + MPMX19_01603 0.34 +0.3
1,680,395 + MPMX19_01603 0.34 -1.9
1,680,395 + MPMX19_01603 0.34 +0.9
1,680,395 + MPMX19_01603 0.34 -1.3
1,680,395 + MPMX19_01603 0.34 +0.1
1,680,396 - MPMX19_01603 0.34 -1.2
1,680,396 - MPMX19_01603 0.34 -0.4
1,680,396 - MPMX19_01603 0.34 -1.7
1,680,396 - MPMX19_01603 0.34 -1.5
1,680,396 - MPMX19_01603 0.34 -0.9
1,680,396 - MPMX19_01603 0.34 +0.3
1,680,396 - MPMX19_01603 0.34 +0.9
1,680,396 - MPMX19_01603 0.34 +0.6
1,680,396 - MPMX19_01603 0.34 -1.2
1,680,396 - MPMX19_01603 0.34 +1.1
1,680,396 - MPMX19_01603 0.34 -0.7
1,680,396 - MPMX19_01603 0.34 +0.1
1,680,396 - MPMX19_01603 0.34 +0.4
1,680,396 - MPMX19_01603 0.34 -0.1
1,680,396 - MPMX19_01603 0.34 -0.6
1,680,396 - MPMX19_01603 0.34 -0.7
1,680,396 - MPMX19_01603 0.34 -0.3
1,680,396 - MPMX19_01603 0.34 +0.1
1,680,396 - MPMX19_01603 0.34 -1.3
1,680,396 - MPMX19_01603 0.34 +0.3
1,680,396 - MPMX19_01603 0.34 +0.3
1,680,396 - MPMX19_01603 0.34 -1.1
1,680,396 - MPMX19_01603 0.34 +1.2
1,680,396 - MPMX19_01603 0.34 -0.5
1,680,396 - MPMX19_01603 0.34 -0.7
1,680,396 - MPMX19_01603 0.34 -1.1
1,680,396 - MPMX19_01603 0.34 -0.7
1,680,396 - MPMX19_01603 0.34 -0.7
1,680,396 - MPMX19_01603 0.34 -0.3
1,680,396 - MPMX19_01603 0.34 +0.6
1,680,396 - MPMX19_01603 0.34 -0.4
1,680,396 - MPMX19_01603 0.34 -1.7
1,680,396 - MPMX19_01603 0.34 -0.6
1,680,396 - MPMX19_01603 0.34 -0.4
1,680,396 - MPMX19_01603 0.34 -0.6
1,680,396 - MPMX19_01603 0.34 +1.1
1,680,396 - MPMX19_01603 0.34 -1.2
1,680,443 + MPMX19_01603 0.40 -1.5
1,680,444 - MPMX19_01603 0.40 -1.2

Or see this region's nucleotide sequence