Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01475

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01473 and MPMX19_01474 overlap by 4 nucleotidesMPMX19_01474 and MPMX19_01475 are separated by 47 nucleotidesMPMX19_01475 and MPMX19_01476 are separated by 36 nucleotides MPMX19_01473: MPMX19_01473 - hypothetical protein, at 1,546,635 to 1,547,453 _01473 MPMX19_01474: MPMX19_01474 - hypothetical protein, at 1,547,450 to 1,548,247 _01474 MPMX19_01475: MPMX19_01475 - hypothetical protein, at 1,548,295 to 1,548,678 _01475 MPMX19_01476: MPMX19_01476 - hypothetical protein, at 1,548,715 to 1,551,255 _01476 Position (kb) 1548 1549Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1547.352 kb on + strand, within MPMX19_01473at 1547.352 kb on + strand, within MPMX19_01473at 1547.352 kb on + strand, within MPMX19_01473at 1547.352 kb on + strand, within MPMX19_01473at 1547.352 kb on + strand, within MPMX19_01473at 1547.352 kb on + strand, within MPMX19_01473at 1547.353 kb on - strand, within MPMX19_01473at 1547.353 kb on - strand, within MPMX19_01473at 1547.353 kb on - strand, within MPMX19_01473at 1547.353 kb on - strand, within MPMX19_01473at 1547.353 kb on - strand, within MPMX19_01473at 1547.353 kb on - strand, within MPMX19_01473at 1547.353 kb on - strand, within MPMX19_01473at 1547.353 kb on - strand, within MPMX19_01473at 1547.711 kb on + strand, within MPMX19_01474at 1547.711 kb on + strand, within MPMX19_01474at 1547.711 kb on + strand, within MPMX19_01474at 1547.712 kb on - strand, within MPMX19_01474at 1547.712 kb on - strand, within MPMX19_01474at 1547.732 kb on + strand, within MPMX19_01474at 1547.732 kb on + strand, within MPMX19_01474at 1547.732 kb on + strand, within MPMX19_01474at 1547.732 kb on + strand, within MPMX19_01474at 1547.732 kb on + strand, within MPMX19_01474at 1547.732 kb on + strand, within MPMX19_01474at 1547.732 kb on + strand, within MPMX19_01474at 1547.733 kb on - strand, within MPMX19_01474at 1547.733 kb on - strand, within MPMX19_01474at 1547.733 kb on - strand, within MPMX19_01474at 1547.733 kb on - strand, within MPMX19_01474at 1547.733 kb on - strand, within MPMX19_01474at 1547.733 kb on - strand, within MPMX19_01474at 1547.733 kb on - strand, within MPMX19_01474at 1547.973 kb on + strand, within MPMX19_01474at 1547.973 kb on + strand, within MPMX19_01474at 1547.973 kb on + strand, within MPMX19_01474at 1547.973 kb on + strand, within MPMX19_01474at 1547.973 kb on + strand, within MPMX19_01474at 1547.973 kb on + strand, within MPMX19_01474at 1547.974 kb on - strand, within MPMX19_01474at 1547.974 kb on - strand, within MPMX19_01474at 1547.974 kb on - strand, within MPMX19_01474at 1547.974 kb on - strand, within MPMX19_01474at 1547.974 kb on - strand, within MPMX19_01474at 1547.974 kb on - strand, within MPMX19_01474at 1547.974 kb on - strand, within MPMX19_01474at 1547.974 kb on - strand, within MPMX19_01474at 1547.984 kb on + strand, within MPMX19_01474at 1547.984 kb on + strand, within MPMX19_01474at 1547.984 kb on + strand, within MPMX19_01474at 1547.984 kb on + strand, within MPMX19_01474at 1547.984 kb on + strand, within MPMX19_01474at 1547.984 kb on + strand, within MPMX19_01474at 1547.985 kb on - strand, within MPMX19_01474at 1547.985 kb on - strand, within MPMX19_01474at 1547.985 kb on - strand, within MPMX19_01474at 1547.985 kb on - strand, within MPMX19_01474at 1547.985 kb on - strand, within MPMX19_01474at 1547.985 kb on - strand, within MPMX19_01474at 1547.985 kb on - strand, within MPMX19_01474at 1547.985 kb on - strand, within MPMX19_01474at 1547.985 kb on - strand, within MPMX19_01474at 1547.985 kb on - strand, within MPMX19_01474at 1547.985 kb on - strand, within MPMX19_01474at 1547.985 kb on - strand, within MPMX19_01474at 1548.171 kb on - strandat 1548.171 kb on - strandat 1548.347 kb on + strand, within MPMX19_01475at 1548.347 kb on + strand, within MPMX19_01475at 1548.347 kb on + strand, within MPMX19_01475at 1548.347 kb on + strand, within MPMX19_01475at 1548.348 kb on - strand, within MPMX19_01475at 1548.348 kb on - strand, within MPMX19_01475at 1548.348 kb on - strand, within MPMX19_01475at 1548.348 kb on - strand, within MPMX19_01475at 1548.348 kb on - strand, within MPMX19_01475at 1548.557 kb on + strand, within MPMX19_01475at 1548.557 kb on + strand, within MPMX19_01475at 1548.557 kb on + strand, within MPMX19_01475at 1548.557 kb on + strand, within MPMX19_01475at 1548.557 kb on + strand, within MPMX19_01475at 1548.558 kb on - strand, within MPMX19_01475at 1548.558 kb on - strand, within MPMX19_01475at 1548.558 kb on - strand, within MPMX19_01475at 1548.558 kb on - strand, within MPMX19_01475at 1548.558 kb on - strand, within MPMX19_01475at 1548.558 kb on - strand, within MPMX19_01475at 1548.694 kb on + strandat 1548.694 kb on + strandat 1548.694 kb on + strandat 1548.694 kb on + strandat 1548.694 kb on + strandat 1548.694 kb on + strandat 1548.694 kb on + strandat 1548.694 kb on + strandat 1548.694 kb on + strandat 1548.695 kb on - strandat 1548.695 kb on - strandat 1548.695 kb on - strandat 1548.695 kb on - strandat 1548.695 kb on - strandat 1548.695 kb on - strandat 1548.695 kb on - strandat 1548.695 kb on - strandat 1548.695 kb on - strandat 1548.695 kb on - strandat 1548.695 kb on - strandat 1548.716 kb on + strandat 1548.716 kb on + strandat 1548.716 kb on + strandat 1548.716 kb on + strandat 1548.716 kb on + strandat 1548.716 kb on + strandat 1548.716 kb on + strandat 1548.716 kb on + strandat 1548.717 kb on - strandat 1548.717 kb on - strandat 1548.717 kb on - strandat 1548.717 kb on - strandat 1548.717 kb on - strandat 1548.717 kb on - strandat 1548.717 kb on - strandat 1548.717 kb on - strandat 1548.717 kb on - strandat 1548.717 kb on - strandat 1548.717 kb on - strandat 1548.803 kb on + strandat 1548.803 kb on + strandat 1548.803 kb on + strandat 1548.804 kb on - strandat 1548.804 kb on - strandat 1548.804 kb on - strandat 1548.815 kb on + strandat 1548.815 kb on + strandat 1548.815 kb on + strandat 1548.815 kb on + strandat 1548.815 kb on + strandat 1548.815 kb on + strandat 1548.815 kb on + strandat 1548.815 kb on + strandat 1548.816 kb on - strandat 1548.836 kb on + strandat 1548.836 kb on + strandat 1548.836 kb on + strandat 1548.836 kb on + strandat 1548.836 kb on + strandat 1548.836 kb on + strandat 1548.836 kb on + strandat 1548.837 kb on - strandat 1548.837 kb on - strandat 1548.837 kb on - strandat 1548.837 kb on - strandat 1548.837 kb on - strandat 1548.837 kb on - strandat 1548.837 kb on - strandat 1548.837 kb on - strandat 1548.837 kb on - strandat 1549.004 kb on + strand, within MPMX19_01476at 1549.004 kb on + strand, within MPMX19_01476at 1549.005 kb on - strand, within MPMX19_01476at 1549.005 kb on - strand, within MPMX19_01476at 1549.005 kb on - strand, within MPMX19_01476at 1549.005 kb on - strand, within MPMX19_01476at 1549.005 kb on - strand, within MPMX19_01476at 1549.005 kb on - strand, within MPMX19_01476at 1549.020 kb on - strand, within MPMX19_01476at 1549.020 kb on - strand, within MPMX19_01476at 1549.357 kb on + strand, within MPMX19_01476at 1549.357 kb on + strand, within MPMX19_01476at 1549.358 kb on - strand, within MPMX19_01476at 1549.358 kb on - strand, within MPMX19_01476at 1549.358 kb on - strand, within MPMX19_01476at 1549.451 kb on + strand, within MPMX19_01476at 1549.451 kb on + strand, within MPMX19_01476at 1549.451 kb on + strand, within MPMX19_01476at 1549.451 kb on + strand, within MPMX19_01476at 1549.452 kb on + strand, within MPMX19_01476at 1549.452 kb on - strand, within MPMX19_01476at 1549.452 kb on - strand, within MPMX19_01476at 1549.452 kb on - strand, within MPMX19_01476at 1549.452 kb on - strand, within MPMX19_01476at 1549.583 kb on + strand, within MPMX19_01476at 1549.583 kb on + strand, within MPMX19_01476at 1549.583 kb on + strand, within MPMX19_01476at 1549.583 kb on + strand, within MPMX19_01476at 1549.583 kb on + strand, within MPMX19_01476at 1549.583 kb on + strand, within MPMX19_01476at 1549.583 kb on + strand, within MPMX19_01476at 1549.583 kb on + strand, within MPMX19_01476at 1549.583 kb on + strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.584 kb on - strand, within MPMX19_01476at 1549.628 kb on + strand, within MPMX19_01476

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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1,547,352 + MPMX19_01473 0.88 +0.4
1,547,352 + MPMX19_01473 0.88 -0.5
1,547,352 + MPMX19_01473 0.88 +0.7
1,547,352 + MPMX19_01473 0.88 -0.9
1,547,352 + MPMX19_01473 0.88 -0.8
1,547,352 + MPMX19_01473 0.88 -0.0
1,547,353 - MPMX19_01473 0.88 -1.3
1,547,353 - MPMX19_01473 0.88 -0.7
1,547,353 - MPMX19_01473 0.88 +2.0
1,547,353 - MPMX19_01473 0.88 -1.1
1,547,353 - MPMX19_01473 0.88 +0.5
1,547,353 - MPMX19_01473 0.88 -0.2
1,547,353 - MPMX19_01473 0.88 -1.4
1,547,353 - MPMX19_01473 0.88 -1.3
1,547,711 + MPMX19_01474 0.33 -2.8
1,547,711 + MPMX19_01474 0.33 -0.7
1,547,711 + MPMX19_01474 0.33 -0.3
1,547,712 - MPMX19_01474 0.33 -0.8
1,547,712 - MPMX19_01474 0.33 -0.5
1,547,732 + MPMX19_01474 0.35 +0.0
1,547,732 + MPMX19_01474 0.35 -0.8
1,547,732 + MPMX19_01474 0.35 +0.6
1,547,732 + MPMX19_01474 0.35 -0.4
1,547,732 + MPMX19_01474 0.35 +0.7
1,547,732 + MPMX19_01474 0.35 +0.0
1,547,732 + MPMX19_01474 0.35 -0.0
1,547,733 - MPMX19_01474 0.35 -0.1
1,547,733 - MPMX19_01474 0.35 -1.1
1,547,733 - MPMX19_01474 0.35 -1.4
1,547,733 - MPMX19_01474 0.35 -1.9
1,547,733 - MPMX19_01474 0.35 +0.8
1,547,733 - MPMX19_01474 0.35 +0.0
1,547,733 - MPMX19_01474 0.35 -2.0
1,547,973 + MPMX19_01474 0.66 +0.0
1,547,973 + MPMX19_01474 0.66 -0.4
1,547,973 + MPMX19_01474 0.66 -0.6
1,547,973 + MPMX19_01474 0.66 -1.0
1,547,973 + MPMX19_01474 0.66 +1.2
1,547,973 + MPMX19_01474 0.66 +1.0
1,547,974 - MPMX19_01474 0.66 +0.5
1,547,974 - MPMX19_01474 0.66 +2.0
1,547,974 - MPMX19_01474 0.66 -1.3
1,547,974 - MPMX19_01474 0.66 -1.0
1,547,974 - MPMX19_01474 0.66 -0.9
1,547,974 - MPMX19_01474 0.66 -1.1
1,547,974 - MPMX19_01474 0.66 -1.2
1,547,974 - MPMX19_01474 0.66 -1.0
1,547,984 + MPMX19_01474 0.67 -0.7
1,547,984 + MPMX19_01474 0.67 +1.8
1,547,984 + MPMX19_01474 0.67 +0.1
1,547,984 + MPMX19_01474 0.67 +0.0
1,547,984 + MPMX19_01474 0.67 -0.9
1,547,984 + MPMX19_01474 0.67 -1.9
1,547,985 - MPMX19_01474 0.67 +0.5
1,547,985 - MPMX19_01474 0.67 +0.0
1,547,985 - MPMX19_01474 0.67 -1.4
1,547,985 - MPMX19_01474 0.67 -0.4
1,547,985 - MPMX19_01474 0.67 +0.2
1,547,985 - MPMX19_01474 0.67 +1.4
1,547,985 - MPMX19_01474 0.67 -0.2
1,547,985 - MPMX19_01474 0.67 +0.6
1,547,985 - MPMX19_01474 0.67 -1.1
1,547,985 - MPMX19_01474 0.67 -1.9
1,547,985 - MPMX19_01474 0.67 -0.5
1,547,985 - MPMX19_01474 0.67 +0.2
1,548,171 - -0.5
1,548,171 - +0.2
1,548,347 + MPMX19_01475 0.14 -0.3
1,548,347 + MPMX19_01475 0.14 -1.8
1,548,347 + MPMX19_01475 0.14 +1.7
1,548,347 + MPMX19_01475 0.14 +0.1
1,548,348 - MPMX19_01475 0.14 -0.9
1,548,348 - MPMX19_01475 0.14 +1.3
1,548,348 - MPMX19_01475 0.14 -0.4
1,548,348 - MPMX19_01475 0.14 -1.7
1,548,348 - MPMX19_01475 0.14 -1.3
1,548,557 + MPMX19_01475 0.68 -0.5
1,548,557 + MPMX19_01475 0.68 -1.9
1,548,557 + MPMX19_01475 0.68 +1.3
1,548,557 + MPMX19_01475 0.68 -1.4
1,548,557 + MPMX19_01475 0.68 -0.8
1,548,558 - MPMX19_01475 0.68 -1.0
1,548,558 - MPMX19_01475 0.68 -1.9
1,548,558 - MPMX19_01475 0.68 -1.0
1,548,558 - MPMX19_01475 0.68 -0.5
1,548,558 - MPMX19_01475 0.68 -1.3
1,548,558 - MPMX19_01475 0.68 -1.2
1,548,694 + -1.1
1,548,694 + +0.6
1,548,694 + -1.4
1,548,694 + -0.6
1,548,694 + -1.1
1,548,694 + +0.7
1,548,694 + -0.1
1,548,694 + +0.5
1,548,694 + -0.1
1,548,695 - -0.8
1,548,695 - -0.3
1,548,695 - -0.1
1,548,695 - -1.2
1,548,695 - -0.7
1,548,695 - -0.3
1,548,695 - -1.5
1,548,695 - -0.7
1,548,695 - -2.4
1,548,695 - -1.0
1,548,695 - -1.1
1,548,716 + -0.5
1,548,716 + -1.5
1,548,716 + +1.5
1,548,716 + +0.6
1,548,716 + -0.4
1,548,716 + -1.1
1,548,716 + -2.3
1,548,716 + -0.9
1,548,717 - -0.6
1,548,717 - +1.0
1,548,717 - +0.9
1,548,717 - -0.2
1,548,717 - -1.9
1,548,717 - +1.5
1,548,717 - -1.4
1,548,717 - +0.5
1,548,717 - -2.0
1,548,717 - -3.4
1,548,717 - +0.2
1,548,803 + +0.0
1,548,803 + -0.4
1,548,803 + -2.3
1,548,804 - -0.5
1,548,804 - +0.8
1,548,804 - -0.8
1,548,815 + +0.0
1,548,815 + +0.3
1,548,815 + -0.5
1,548,815 + -0.4
1,548,815 + -1.0
1,548,815 + -0.9
1,548,815 + +0.2
1,548,815 + -1.7
1,548,816 - -0.1
1,548,836 + -0.8
1,548,836 + -2.2
1,548,836 + -0.1
1,548,836 + +0.9
1,548,836 + -0.3
1,548,836 + -0.7
1,548,836 + +0.6
1,548,837 - -0.5
1,548,837 - +0.0
1,548,837 - -1.0
1,548,837 - +0.4
1,548,837 - -0.1
1,548,837 - -1.3
1,548,837 - -1.5
1,548,837 - -0.4
1,548,837 - -0.4
1,549,004 + MPMX19_01476 0.11 -0.1
1,549,004 + MPMX19_01476 0.11 -0.4
1,549,005 - MPMX19_01476 0.11 -0.4
1,549,005 - MPMX19_01476 0.11 -0.7
1,549,005 - MPMX19_01476 0.11 -1.1
1,549,005 - MPMX19_01476 0.11 +0.2
1,549,005 - MPMX19_01476 0.11 -1.1
1,549,005 - MPMX19_01476 0.11 +0.9
1,549,020 - MPMX19_01476 0.12 -0.5
1,549,020 - MPMX19_01476 0.12 +0.0
1,549,357 + MPMX19_01476 0.25 -1.4
1,549,357 + MPMX19_01476 0.25 +1.3
1,549,358 - MPMX19_01476 0.25 -1.5
1,549,358 - MPMX19_01476 0.25 +1.0
1,549,358 - MPMX19_01476 0.25 +0.0
1,549,451 + MPMX19_01476 0.29 -0.5
1,549,451 + MPMX19_01476 0.29 -2.0
1,549,451 + MPMX19_01476 0.29 -1.1
1,549,451 + MPMX19_01476 0.29 +0.5
1,549,452 + MPMX19_01476 0.29 -3.2
1,549,452 - MPMX19_01476 0.29 +0.0
1,549,452 - MPMX19_01476 0.29 -1.0
1,549,452 - MPMX19_01476 0.29 +0.1
1,549,452 - MPMX19_01476 0.29 +0.1
1,549,583 + MPMX19_01476 0.34 -1.1
1,549,583 + MPMX19_01476 0.34 -0.1
1,549,583 + MPMX19_01476 0.34 -1.8
1,549,583 + MPMX19_01476 0.34 +1.0
1,549,583 + MPMX19_01476 0.34 +2.0
1,549,583 + MPMX19_01476 0.34 -0.5
1,549,583 + MPMX19_01476 0.34 -0.3
1,549,583 + MPMX19_01476 0.34 -1.0
1,549,583 + MPMX19_01476 0.34 -2.7
1,549,584 - MPMX19_01476 0.34 -1.2
1,549,584 - MPMX19_01476 0.34 -1.1
1,549,584 - MPMX19_01476 0.34 +0.3
1,549,584 - MPMX19_01476 0.34 -1.3
1,549,584 - MPMX19_01476 0.34 -1.4
1,549,584 - MPMX19_01476 0.34 -0.3
1,549,584 - MPMX19_01476 0.34 -0.7
1,549,584 - MPMX19_01476 0.34 +0.8
1,549,584 - MPMX19_01476 0.34 -0.4
1,549,584 - MPMX19_01476 0.34 -1.9
1,549,584 - MPMX19_01476 0.34 -0.0
1,549,584 - MPMX19_01476 0.34 +0.0
1,549,584 - MPMX19_01476 0.34 -2.2
1,549,584 - MPMX19_01476 0.34 -1.8
1,549,584 - MPMX19_01476 0.34 -0.7
1,549,584 - MPMX19_01476 0.34 -0.7
1,549,584 - MPMX19_01476 0.34 +0.9
1,549,584 - MPMX19_01476 0.34 -2.0
1,549,584 - MPMX19_01476 0.34 -2.5
1,549,628 + MPMX19_01476 0.36 +0.0

Or see this region's nucleotide sequence