Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01399

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01398 and MPMX19_01399 are separated by 173 nucleotidesMPMX19_01399 and MPMX19_01400 are separated by 55 nucleotidesMPMX19_01400 and MPMX19_01401 are separated by 223 nucleotides MPMX19_01398: MPMX19_01398 - hypothetical protein, at 1,462,982 to 1,463,842 _01398 MPMX19_01399: MPMX19_01399 - Pyrroline-5-carboxylate reductase, at 1,464,016 to 1,464,840 _01399 MPMX19_01400: MPMX19_01400 - hypothetical protein, at 1,464,896 to 1,465,399 _01400 MPMX19_01401: MPMX19_01401 - Ubiquinone biosynthesis accessory factor UbiK, at 1,465,623 to 1,465,997 _01401 Position (kb) 1464 1465Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1463.107 kb on + strand, within MPMX19_01398at 1463.115 kb on + strand, within MPMX19_01398at 1463.115 kb on + strand, within MPMX19_01398at 1463.115 kb on + strand, within MPMX19_01398at 1463.115 kb on + strand, within MPMX19_01398at 1463.115 kb on + strand, within MPMX19_01398at 1463.115 kb on + strand, within MPMX19_01398at 1463.115 kb on + strand, within MPMX19_01398at 1463.116 kb on - strand, within MPMX19_01398at 1463.373 kb on + strand, within MPMX19_01398at 1463.373 kb on + strand, within MPMX19_01398at 1463.374 kb on - strand, within MPMX19_01398at 1463.401 kb on + strand, within MPMX19_01398at 1463.413 kb on + strand, within MPMX19_01398at 1463.413 kb on + strand, within MPMX19_01398at 1463.414 kb on - strand, within MPMX19_01398at 1463.449 kb on + strand, within MPMX19_01398at 1463.449 kb on + strand, within MPMX19_01398at 1463.449 kb on + strand, within MPMX19_01398at 1463.449 kb on + strand, within MPMX19_01398at 1463.449 kb on + strand, within MPMX19_01398at 1463.450 kb on - strand, within MPMX19_01398at 1463.450 kb on - strand, within MPMX19_01398at 1463.450 kb on - strand, within MPMX19_01398at 1463.544 kb on + strand, within MPMX19_01398at 1463.544 kb on + strand, within MPMX19_01398at 1463.544 kb on + strand, within MPMX19_01398at 1463.544 kb on + strand, within MPMX19_01398at 1463.545 kb on - strand, within MPMX19_01398at 1463.545 kb on - strand, within MPMX19_01398at 1463.557 kb on + strand, within MPMX19_01398at 1463.557 kb on - strand, within MPMX19_01398at 1463.558 kb on - strand, within MPMX19_01398at 1463.558 kb on - strand, within MPMX19_01398at 1463.558 kb on - strand, within MPMX19_01398at 1463.558 kb on - strand, within MPMX19_01398at 1463.558 kb on - strand, within MPMX19_01398at 1463.558 kb on - strand, within MPMX19_01398at 1463.609 kb on + strand, within MPMX19_01398at 1463.609 kb on + strand, within MPMX19_01398at 1463.609 kb on + strand, within MPMX19_01398at 1463.610 kb on - strand, within MPMX19_01398at 1463.610 kb on - strand, within MPMX19_01398at 1463.635 kb on + strand, within MPMX19_01398at 1463.635 kb on + strand, within MPMX19_01398at 1463.635 kb on + strand, within MPMX19_01398at 1463.635 kb on + strand, within MPMX19_01398at 1463.636 kb on - strand, within MPMX19_01398at 1463.649 kb on + strand, within MPMX19_01398at 1463.649 kb on + strand, within MPMX19_01398at 1463.650 kb on - strand, within MPMX19_01398at 1463.650 kb on - strand, within MPMX19_01398at 1463.650 kb on - strand, within MPMX19_01398at 1463.650 kb on - strand, within MPMX19_01398at 1463.667 kb on + strand, within MPMX19_01398at 1463.667 kb on + strand, within MPMX19_01398at 1463.667 kb on + strand, within MPMX19_01398at 1463.667 kb on + strand, within MPMX19_01398at 1463.667 kb on + strand, within MPMX19_01398at 1463.667 kb on + strand, within MPMX19_01398at 1463.667 kb on + strand, within MPMX19_01398at 1463.667 kb on + strand, within MPMX19_01398at 1463.667 kb on + strand, within MPMX19_01398at 1463.667 kb on + strand, within MPMX19_01398at 1463.667 kb on + strand, within MPMX19_01398at 1463.667 kb on + strand, within MPMX19_01398at 1463.667 kb on + strand, within MPMX19_01398at 1463.668 kb on - strand, within MPMX19_01398at 1463.668 kb on - strand, within MPMX19_01398at 1463.668 kb on - strand, within MPMX19_01398at 1463.668 kb on - strand, within MPMX19_01398at 1463.668 kb on - strand, within MPMX19_01398at 1463.668 kb on - strand, within MPMX19_01398at 1463.668 kb on - strand, within MPMX19_01398at 1463.668 kb on - strand, within MPMX19_01398at 1463.668 kb on - strand, within MPMX19_01398at 1463.668 kb on - strand, within MPMX19_01398at 1463.668 kb on - strand, within MPMX19_01398at 1463.668 kb on - strand, within MPMX19_01398at 1463.913 kb on + strandat 1464.009 kb on + strandat 1464.009 kb on + strandat 1464.010 kb on - strandat 1464.010 kb on - strandat 1464.010 kb on - strandat 1464.010 kb on - strandat 1464.897 kb on + strandat 1464.897 kb on + strandat 1464.898 kb on - strandat 1464.898 kb on - strandat 1464.898 kb on - strandat 1464.898 kb on - strandat 1464.898 kb on - strandat 1464.898 kb on - strandat 1464.898 kb on - strandat 1464.922 kb on + strandat 1464.922 kb on + strandat 1464.923 kb on - strandat 1464.923 kb on - strandat 1464.923 kb on - strandat 1464.985 kb on - strand, within MPMX19_01400at 1464.985 kb on - strand, within MPMX19_01400at 1464.985 kb on - strand, within MPMX19_01400at 1464.985 kb on - strand, within MPMX19_01400at 1465.090 kb on + strand, within MPMX19_01400at 1465.090 kb on + strand, within MPMX19_01400at 1465.090 kb on + strand, within MPMX19_01400at 1465.090 kb on + strand, within MPMX19_01400at 1465.090 kb on + strand, within MPMX19_01400at 1465.090 kb on + strand, within MPMX19_01400at 1465.090 kb on + strand, within MPMX19_01400at 1465.090 kb on + strand, within MPMX19_01400at 1465.090 kb on + strand, within MPMX19_01400at 1465.091 kb on - strand, within MPMX19_01400at 1465.091 kb on - strand, within MPMX19_01400at 1465.091 kb on - strand, within MPMX19_01400at 1465.091 kb on - strand, within MPMX19_01400at 1465.091 kb on - strand, within MPMX19_01400at 1465.091 kb on - strand, within MPMX19_01400at 1465.245 kb on + strand, within MPMX19_01400at 1465.245 kb on + strand, within MPMX19_01400at 1465.245 kb on + strand, within MPMX19_01400at 1465.246 kb on - strand, within MPMX19_01400at 1465.246 kb on - strand, within MPMX19_01400at 1465.425 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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1,463,107 + MPMX19_01398 0.15 -0.4
1,463,115 + MPMX19_01398 0.15 -0.7
1,463,115 + MPMX19_01398 0.15 +0.1
1,463,115 + MPMX19_01398 0.15 +0.0
1,463,115 + MPMX19_01398 0.15 +0.1
1,463,115 + MPMX19_01398 0.15 +3.0
1,463,115 + MPMX19_01398 0.15 +0.8
1,463,115 + MPMX19_01398 0.15 +0.7
1,463,116 - MPMX19_01398 0.16 -1.3
1,463,373 + MPMX19_01398 0.45 -0.6
1,463,373 + MPMX19_01398 0.45 -0.6
1,463,374 - MPMX19_01398 0.46 +0.5
1,463,401 + MPMX19_01398 0.49 +0.4
1,463,413 + MPMX19_01398 0.50 -0.3
1,463,413 + MPMX19_01398 0.50 +1.0
1,463,414 - MPMX19_01398 0.50 +0.3
1,463,449 + MPMX19_01398 0.54 +1.0
1,463,449 + MPMX19_01398 0.54 +0.0
1,463,449 + MPMX19_01398 0.54 +0.4
1,463,449 + MPMX19_01398 0.54 -1.1
1,463,449 + MPMX19_01398 0.54 -0.2
1,463,450 - MPMX19_01398 0.54 +1.0
1,463,450 - MPMX19_01398 0.54 -1.1
1,463,450 - MPMX19_01398 0.54 -0.8
1,463,544 + MPMX19_01398 0.65 +0.6
1,463,544 + MPMX19_01398 0.65 -0.8
1,463,544 + MPMX19_01398 0.65 -0.9
1,463,544 + MPMX19_01398 0.65 +0.3
1,463,545 - MPMX19_01398 0.65 +0.4
1,463,545 - MPMX19_01398 0.65 -0.5
1,463,557 + MPMX19_01398 0.67 +1.0
1,463,557 - MPMX19_01398 0.67 -0.6
1,463,558 - MPMX19_01398 0.67 +0.2
1,463,558 - MPMX19_01398 0.67 -0.8
1,463,558 - MPMX19_01398 0.67 -1.1
1,463,558 - MPMX19_01398 0.67 -0.4
1,463,558 - MPMX19_01398 0.67 +0.6
1,463,558 - MPMX19_01398 0.67 -2.0
1,463,609 + MPMX19_01398 0.73 -0.6
1,463,609 + MPMX19_01398 0.73 -1.1
1,463,609 + MPMX19_01398 0.73 +0.4
1,463,610 - MPMX19_01398 0.73 +0.0
1,463,610 - MPMX19_01398 0.73 -2.5
1,463,635 + MPMX19_01398 0.76 -0.1
1,463,635 + MPMX19_01398 0.76 -0.3
1,463,635 + MPMX19_01398 0.76 -0.5
1,463,635 + MPMX19_01398 0.76 -0.4
1,463,636 - MPMX19_01398 0.76 -2.4
1,463,649 + MPMX19_01398 0.77 -0.3
1,463,649 + MPMX19_01398 0.77 -1.6
1,463,650 - MPMX19_01398 0.78 +0.2
1,463,650 - MPMX19_01398 0.78 +0.9
1,463,650 - MPMX19_01398 0.78 -0.2
1,463,650 - MPMX19_01398 0.78 +0.5
1,463,667 + MPMX19_01398 0.80 -1.3
1,463,667 + MPMX19_01398 0.80 -0.3
1,463,667 + MPMX19_01398 0.80 +1.0
1,463,667 + MPMX19_01398 0.80 +0.4
1,463,667 + MPMX19_01398 0.80 +0.0
1,463,667 + MPMX19_01398 0.80 +0.0
1,463,667 + MPMX19_01398 0.80 -0.3
1,463,667 + MPMX19_01398 0.80 -0.9
1,463,667 + MPMX19_01398 0.80 +0.0
1,463,667 + MPMX19_01398 0.80 -1.1
1,463,667 + MPMX19_01398 0.80 -1.1
1,463,667 + MPMX19_01398 0.80 +0.7
1,463,667 + MPMX19_01398 0.80 -0.1
1,463,668 - MPMX19_01398 0.80 -0.3
1,463,668 - MPMX19_01398 0.80 -0.8
1,463,668 - MPMX19_01398 0.80 -0.3
1,463,668 - MPMX19_01398 0.80 -1.4
1,463,668 - MPMX19_01398 0.80 -1.8
1,463,668 - MPMX19_01398 0.80 -1.9
1,463,668 - MPMX19_01398 0.80 -1.0
1,463,668 - MPMX19_01398 0.80 +0.4
1,463,668 - MPMX19_01398 0.80 -1.6
1,463,668 - MPMX19_01398 0.80 +0.4
1,463,668 - MPMX19_01398 0.80 +1.1
1,463,668 - MPMX19_01398 0.80 -0.3
1,463,913 + -2.4
1,464,009 + -1.3
1,464,009 + +0.0
1,464,010 - -0.4
1,464,010 - -0.6
1,464,010 - +0.4
1,464,010 - -0.8
1,464,897 + -1.3
1,464,897 + +0.0
1,464,898 - -0.1
1,464,898 - +2.0
1,464,898 - +0.4
1,464,898 - +0.8
1,464,898 - -1.3
1,464,898 - +0.4
1,464,898 - -1.3
1,464,922 + +2.0
1,464,922 + +0.4
1,464,923 - +1.0
1,464,923 - +1.0
1,464,923 - +1.0
1,464,985 - MPMX19_01400 0.18 -1.0
1,464,985 - MPMX19_01400 0.18 -0.8
1,464,985 - MPMX19_01400 0.18 -0.8
1,464,985 - MPMX19_01400 0.18 -0.3
1,465,090 + MPMX19_01400 0.38 +0.0
1,465,090 + MPMX19_01400 0.38 +3.0
1,465,090 + MPMX19_01400 0.38 +2.0
1,465,090 + MPMX19_01400 0.38 +1.0
1,465,090 + MPMX19_01400 0.38 +1.0
1,465,090 + MPMX19_01400 0.38 +1.0
1,465,090 + MPMX19_01400 0.38 +3.0
1,465,090 + MPMX19_01400 0.38 +1.0
1,465,090 + MPMX19_01400 0.38 +0.0
1,465,091 - MPMX19_01400 0.39 -1.0
1,465,091 - MPMX19_01400 0.39 +2.0
1,465,091 - MPMX19_01400 0.39 -0.6
1,465,091 - MPMX19_01400 0.39 +1.3
1,465,091 - MPMX19_01400 0.39 +0.0
1,465,091 - MPMX19_01400 0.39 +0.3
1,465,245 + MPMX19_01400 0.69 -0.3
1,465,245 + MPMX19_01400 0.69 +0.0
1,465,245 + MPMX19_01400 0.69 -0.6
1,465,246 - MPMX19_01400 0.69 +2.0
1,465,246 - MPMX19_01400 0.69 -0.8
1,465,425 - +0.0

Or see this region's nucleotide sequence