Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01207

Experiment: NL-CCM, start OD=0.3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM, start OD=0.3
1,256,712	+		MPMX19_01206	0.54	-1.0
1,256,712	+		MPMX19_01206	0.54	+0.6
1,256,713	-		MPMX19_01206	0.54	-2.5
1,256,713	-		MPMX19_01206	0.54	-1.3
1,256,713	-		MPMX19_01206	0.54	+0.8
1,256,713	-		MPMX19_01206	0.54	-1.3
1,256,713	-		MPMX19_01206	0.54	-1.7
1,256,741	+		MPMX19_01206	0.56	+0.8
1,256,742	-		MPMX19_01206	0.56	-1.3
1,256,825	+		MPMX19_01206	0.63	+0.9
1,256,825	+		MPMX19_01206	0.63	-0.2
1,256,825	+		MPMX19_01206	0.63	+2.0
1,256,825	+		MPMX19_01206	0.63	+0.2
1,256,825	+		MPMX19_01206	0.63	-0.2
1,256,825	+		MPMX19_01206	0.63	-0.0
1,256,825	+		MPMX19_01206	0.63	+1.1
1,256,825	+		MPMX19_01206	0.63	-0.6
1,256,825	+		MPMX19_01206	0.63	+0.4
1,256,826	-		MPMX19_01206	0.63	+1.1
1,256,929	+		MPMX19_01206	0.71	+0.3
1,256,929	+		MPMX19_01206	0.71	-1.3
1,256,929	+		MPMX19_01206	0.71	-0.5
1,256,929	+		MPMX19_01206	0.71	+0.8
1,256,929	+		MPMX19_01206	0.71	-1.1
1,256,929	+		MPMX19_01206	0.71	-0.8
1,256,930	-		MPMX19_01206	0.71	-1.2
1,257,140	+		MPMX19_01206	0.88	-0.3
1,257,140	+		MPMX19_01206	0.88	-0.5
1,257,140	+		MPMX19_01206	0.88	-0.8
1,257,140	+		MPMX19_01206	0.88	-0.2
1,257,140	+		MPMX19_01206	0.88	-0.4
1,257,141	-		MPMX19_01206	0.88	-1.7
1,257,141	-		MPMX19_01206	0.88	-1.5
1,257,141	-		MPMX19_01206	0.88	-1.0
1,257,141	-		MPMX19_01206	0.88	-0.3
1,257,141	-		MPMX19_01206	0.88	+0.4
1,257,141	-		MPMX19_01206	0.88	-2.5
1,257,141	-		MPMX19_01206	0.88	+1.1
1,257,318	+				-0.4
1,257,318	+				-0.3
1,257,318	+				-1.9
1,257,318	+				-0.6
1,257,318	+				-0.1
1,257,318	+				+0.6
1,257,318	+				-1.8
1,257,318	+				-0.4
1,257,318	+				-0.8
1,257,318	+				-0.6
1,257,319	-				-1.3
1,257,319	-				-0.0
1,257,319	-				+0.3
1,257,319	-				+1.6
1,257,319	-				-1.5
1,257,319	-				-0.3
1,257,319	-				-2.1
1,257,449	+				+0.2
1,257,449	+				+2.0
1,257,449	+				+0.8
1,257,450	-				-2.1
1,257,450	-				+0.1
1,257,450	-				-0.8
1,257,450	-				-2.0
1,257,549	+				-1.0
1,257,549	+				-1.3
1,257,549	+				-0.8
1,257,549	+				+1.3
1,257,549	+				+1.4
1,257,549	+				-0.6
1,257,549	+				-0.8
1,257,549	+				-0.0
1,257,549	+				-0.3
1,257,549	+				-0.6
1,257,549	+				-1.2
1,257,550	-				-1.6
1,257,550	-				-0.6
1,257,550	-				-0.0
1,257,550	-				+0.2
1,257,550	-				-0.8
1,257,550	-				-0.9
1,257,550	-				-1.9
1,257,550	-				-0.1
1,257,550	-				-0.1
1,257,550	-				-0.4
1,257,550	-				-1.1
1,257,550	-				+0.4
1,257,550	-				-0.6
1,257,712	+		MPMX19_01207	0.16	-0.9
1,257,712	+		MPMX19_01207	0.16	-1.0
1,257,712	+		MPMX19_01207	0.16	-0.6
1,257,712	+		MPMX19_01207	0.16	+0.3
1,257,712	+		MPMX19_01207	0.16	-1.2
1,257,713	-		MPMX19_01207	0.16	+0.2
1,257,721	+		MPMX19_01207	0.17	-0.1
1,257,721	+		MPMX19_01207	0.17	-0.3
1,257,721	+		MPMX19_01207	0.17	-0.8
1,257,721	+		MPMX19_01207	0.17	-0.1
1,257,721	+		MPMX19_01207	0.17	-0.3
1,257,721	+		MPMX19_01207	0.17	+0.1
1,257,721	+		MPMX19_01207	0.17	+0.4
1,257,721	+		MPMX19_01207	0.17	-0.6
1,257,721	+		MPMX19_01207	0.17	-1.0
1,257,721	+		MPMX19_01207	0.17	-0.9
1,257,721	+		MPMX19_01207	0.17	-0.4
1,257,721	+		MPMX19_01207	0.17	-1.2
1,257,721	+		MPMX19_01207	0.17	-0.1
1,257,721	+		MPMX19_01207	0.17	-0.7
1,257,722	-		MPMX19_01207	0.17	+0.1
1,257,722	-		MPMX19_01207	0.17	-0.8
1,257,722	-		MPMX19_01207	0.17	+0.2
1,257,722	-		MPMX19_01207	0.17	-1.8
1,257,722	-		MPMX19_01207	0.17	-1.3
1,257,722	-		MPMX19_01207	0.17	-0.4
1,257,722	-		MPMX19_01207	0.17	+0.8
1,257,722	-		MPMX19_01207	0.17	-1.3
1,257,722	-		MPMX19_01207	0.17	-0.3
1,257,722	-		MPMX19_01207	0.17	-2.5
1,257,722	-		MPMX19_01207	0.17	-0.4
1,257,722	-		MPMX19_01207	0.17	-1.6
1,257,722	-		MPMX19_01207	0.17	+0.1
1,257,722	-		MPMX19_01207	0.17	-0.2
1,257,722	-		MPMX19_01207	0.17	-0.6
1,257,722	-		MPMX19_01207	0.17	-0.7
1,257,722	-		MPMX19_01207	0.17	-0.5
1,257,722	-		MPMX19_01207	0.17	-1.8
1,257,722	-		MPMX19_01207	0.17	+0.4
1,257,724	+		MPMX19_01207	0.17	-1.3
1,257,724	+		MPMX19_01207	0.17	-0.0
1,257,724	+		MPMX19_01207	0.17	-1.8
1,257,724	+		MPMX19_01207	0.17	-1.3
1,257,724	+		MPMX19_01207	0.17	-0.5
1,257,724	+		MPMX19_01207	0.17	-0.3
1,257,724	+		MPMX19_01207	0.17	-1.0
1,257,724	+		MPMX19_01207	0.17	+0.7
1,257,724	+		MPMX19_01207	0.17	-1.0
1,257,724	+		MPMX19_01207	0.17	-0.8
1,257,724	+		MPMX19_01207	0.17	-2.1
1,257,724	+		MPMX19_01207	0.17	-0.1
1,257,724	+		MPMX19_01207	0.17	-0.8
1,257,724	+		MPMX19_01207	0.17	+0.8
1,257,724	+		MPMX19_01207	0.17	-1.4
1,257,724	+		MPMX19_01207	0.17	-1.4
1,257,724	+		MPMX19_01207	0.17	+0.2
1,257,724	+		MPMX19_01207	0.17	-0.4
1,257,724	+		MPMX19_01207	0.17	-1.8
1,257,724	+		MPMX19_01207	0.17	-1.5
1,257,724	+		MPMX19_01207	0.17	+1.0
1,257,724	+		MPMX19_01207	0.17	+2.0
1,257,724	+		MPMX19_01207	0.17	+0.1
1,257,724	+		MPMX19_01207	0.17	-0.8
1,257,724	+		MPMX19_01207	0.17	-0.1
1,257,724	+		MPMX19_01207	0.17	-0.4
1,257,724	+		MPMX19_01207	0.17	-1.5
1,257,725	-		MPMX19_01207	0.17	-0.9
1,257,725	-		MPMX19_01207	0.17	-0.0
1,257,725	-		MPMX19_01207	0.17	-0.8
1,257,725	-		MPMX19_01207	0.17	-1.6
1,257,725	-		MPMX19_01207	0.17	-0.0
1,257,725	-		MPMX19_01207	0.17	-3.3
1,257,725	-		MPMX19_01207	0.17	-0.7
1,257,725	-		MPMX19_01207	0.17	-0.6
1,257,725	-		MPMX19_01207	0.17	-0.0
1,257,725	-		MPMX19_01207	0.17	+0.2
1,257,725	-		MPMX19_01207	0.17	-1.5
1,257,725	-		MPMX19_01207	0.17	-1.3
1,257,725	-		MPMX19_01207	0.17	-0.7
1,257,725	-		MPMX19_01207	0.17	+1.1
1,257,725	-		MPMX19_01207	0.17	-1.6
1,257,725	-		MPMX19_01207	0.17	-0.1
1,257,725	-		MPMX19_01207	0.17	-1.2
1,257,725	-		MPMX19_01207	0.17	-0.6
1,257,725	-		MPMX19_01207	0.17	+1.1
1,257,725	-		MPMX19_01207	0.17	-0.6
1,257,725	-		MPMX19_01207	0.17	-2.0
1,257,725	-		MPMX19_01207	0.17	-0.5
1,257,725	-		MPMX19_01207	0.17	+0.1
1,257,725	-		MPMX19_01207	0.17	-0.5
1,257,725	-		MPMX19_01207	0.17	-0.6
1,257,725	-		MPMX19_01207	0.17	-2.8
1,257,976	+		MPMX19_01207	0.36	-0.5
1,257,977	-		MPMX19_01207	0.36	-0.7
1,258,066	+		MPMX19_01207	0.43	+0.8
1,258,067	-		MPMX19_01207	0.43	-0.6
1,258,092	+		MPMX19_01207	0.45	-1.3
1,258,092	+		MPMX19_01207	0.45	-0.6
1,258,150	+		MPMX19_01207	0.50	-0.8
1,258,150	+		MPMX19_01207	0.50	-0.5
1,258,150	+		MPMX19_01207	0.50	-1.9
1,258,150	+		MPMX19_01207	0.50	+0.4
1,258,150	+		MPMX19_01207	0.50	-0.5
1,258,150	+		MPMX19_01207	0.50	-1.0
1,258,150	+		MPMX19_01207	0.50	-1.0
1,258,150	+		MPMX19_01207	0.50	-0.7
1,258,150	+		MPMX19_01207	0.50	+0.1
1,258,151	-		MPMX19_01207	0.50	+0.6
1,258,151	-		MPMX19_01207	0.50	-0.5
1,258,151	-		MPMX19_01207	0.50	-0.6
1,258,151	-		MPMX19_01207	0.50	-1.1
1,258,151	-		MPMX19_01207	0.50	-0.8
1,258,151	-		MPMX19_01207	0.50	-1.2
1,258,151	-		MPMX19_01207	0.50	-0.2
1,258,151	-		MPMX19_01207	0.50	-0.2
1,258,151	-		MPMX19_01207	0.50	-1.7
1,258,151	-		MPMX19_01207	0.50	-0.0
1,258,151	-		MPMX19_01207	0.50	-0.2
1,258,151	-		MPMX19_01207	0.50	-0.8
1,258,465	+		MPMX19_01207	0.74	-0.0
1,258,465	+		MPMX19_01207	0.74	-0.6
1,258,465	+		MPMX19_01207	0.74	-0.3
1,258,466	-		MPMX19_01207	0.74	-1.5
1,258,466	-		MPMX19_01207	0.74	+1.0
1,258,634	-		MPMX19_01207	0.87	-0.3
1,258,792	+				-2.0
1,258,792	+				-0.4
1,258,792	+				+0.2
1,258,792	+				+0.1
1,258,792	+				-1.6
1,258,792	+				+1.2
1,258,792	+				-1.0
1,258,792	+				-0.3
1,258,792	+				-0.9
1,258,793	-				-0.3
1,258,793	-				-0.7
1,258,793	-				-0.7
1,258,793	-				-0.4
1,258,793	-				-1.0
1,258,793	-				-1.4
1,259,088	+				-1.6
1,259,089	-				-2.4
1,259,089	-				-0.8
1,259,295	+		MPMX19_01208	0.50	+0.7
1,259,295	+		MPMX19_01208	0.50	+1.0
1,259,296	-		MPMX19_01208	0.50	+1.2
1,259,323	+		MPMX19_01208	0.56	-1.3
1,259,323	+		MPMX19_01208	0.56	-0.0
1,259,323	+		MPMX19_01208	0.56	+0.1
1,259,324	-		MPMX19_01208	0.56	-0.2
1,259,325	+		MPMX19_01208	0.57	-0.0
1,259,325	+		MPMX19_01208	0.57	-0.8
1,259,325	+		MPMX19_01208	0.57	-0.9
1,259,325	+		MPMX19_01208	0.57	-0.0
1,259,325	+		MPMX19_01208	0.57	-2.0
1,259,325	+		MPMX19_01208	0.57	-0.3
1,259,325	+		MPMX19_01208	0.57	+0.2
1,259,325	+		MPMX19_01208	0.57	-1.6
1,259,325	+		MPMX19_01208	0.57	-0.0
1,259,325	+		MPMX19_01208	0.57	-0.2
1,259,325	+		MPMX19_01208	0.57	-1.4
1,259,325	+		MPMX19_01208	0.57	-0.5
1,259,325	+		MPMX19_01208	0.57	+2.0
1,259,325	+		MPMX19_01208	0.57	+2.0
1,259,326	-		MPMX19_01208	0.57	-0.8
1,259,326	-		MPMX19_01208	0.57	+0.5
1,259,326	-		MPMX19_01208	0.57	-1.0
1,259,326	-		MPMX19_01208	0.57	-0.5
1,259,326	-		MPMX19_01208	0.57	+1.0
1,259,326	-		MPMX19_01208	0.57	+0.1
1,259,326	-		MPMX19_01208	0.57	+0.5
1,259,326	-		MPMX19_01208	0.57	+0.7
1,259,326	-		MPMX19_01208	0.57	-0.3
1,259,326	-		MPMX19_01208	0.57	-2.0
1,259,326	-		MPMX19_01208	0.57	-1.2
1,259,326	-		MPMX19_01208	0.57	-2.3
1,259,326	-		MPMX19_01208	0.57	-0.9
1,259,326	-		MPMX19_01208	0.57	+0.4
1,259,326	-		MPMX19_01208	0.57	+0.4
1,259,326	-		MPMX19_01208	0.57	-1.1
1,259,326	-		MPMX19_01208	0.57	-1.3
1,259,326	-		MPMX19_01208	0.57	-0.0
1,259,326	-		MPMX19_01208	0.57	-0.6
1,259,326	-		MPMX19_01208	0.57	-0.8
1,259,326	-		MPMX19_01208	0.57	-0.3
1,259,326	-		MPMX19_01208	0.57	-0.6
1,259,326	-		MPMX19_01208	0.57	-0.8
1,259,346	+		MPMX19_01208	0.61	+1.0
1,259,346	+		MPMX19_01208	0.61	+1.4
1,259,347	-		MPMX19_01208	0.61	+0.9
1,259,347	-		MPMX19_01208	0.61	-0.8
1,259,347	-		MPMX19_01208	0.61	-1.2
1,259,347	-		MPMX19_01208	0.61	-0.6
1,259,347	-		MPMX19_01208	0.61	+0.5
1,259,347	-		MPMX19_01208	0.61	+0.2
1,259,347	-		MPMX19_01208	0.61	+0.8
1,259,347	-		MPMX19_01208	0.61	-1.0
1,259,347	-		MPMX19_01208	0.61	+0.4
1,259,347	-		MPMX19_01208	0.61	-0.7
1,259,347	-		MPMX19_01208	0.61	+0.1
1,259,400	+		MPMX19_01208	0.72	-0.8
1,259,400	+		MPMX19_01208	0.72	-1.5
1,259,400	+		MPMX19_01208	0.72	-0.1
1,259,401	-		MPMX19_01208	0.73	+0.4
1,259,401	-		MPMX19_01208	0.73	-0.3
1,259,401	-		MPMX19_01208	0.73	+1.4
1,259,401	-		MPMX19_01208	0.73	-1.2
1,259,401	-		MPMX19_01208	0.73	-0.0
1,259,514	+				-0.2
1,259,514	+				-1.3
1,259,515	-				-0.0
1,259,515	-				+1.2
1,259,515	-				+0.1
1,259,515	-				-1.0
1,259,515	-				+0.5
1,259,515	-				-0.1
1,259,515	-				-1.1
1,259,515	-				+0.1
1,259,515	-				-0.0
1,259,515	-				-0.5
1,259,515	-				-1.8
1,259,517	+				+0.1
1,259,517	+				+0.6
1,259,517	+				-2.2
1,259,517	+				-0.6
1,259,517	+				-0.3
1,259,517	+				-1.3
1,259,517	+				-2.4
1,259,517	+				-0.2
1,259,518	-				+0.2
1,259,518	-				-0.0
1,259,588	+				+0.4
1,259,588	+				+0.4
1,259,588	+				-0.1
1,259,589	-				-1.0
1,259,589	-				-0.6
1,259,589	-				-0.3
1,259,589	-				-0.3
1,259,589	-				-1.0
1,259,600	-				-0.0
1,259,626	+				-0.0
1,259,627	-				+0.4
1,259,627	-				-0.6
1,259,629	+				-1.2
1,259,629	+				-0.7
1,259,630	-				-1.7
1,259,630	-				+0.4
1,259,662	+				+0.4
1,259,662	+				-2.5
1,259,662	+				-1.2
1,259,662	+				-1.5
1,259,663	-				-0.7
1,259,663	-				-0.5
1,259,663	-				+1.2
1,259,724	+				-0.2
1,259,724	+				-2.0
1,259,724	+				+1.0
1,259,725	-				-1.0
1,259,783	+				+0.7
1,259,783	+				-0.9
1,259,783	+				+2.7
1,259,783	+				-0.1
1,259,783	+				+0.2
1,259,783	+				-0.3
1,259,784	-				-0.5
1,259,784	-				-0.3
1,259,784	-				-0.0
1,259,784	-				-0.0
1,259,784	-				-1.3
1,259,784	-				-2.2
1,259,784	-				-0.3
1,259,784	-				-1.2