Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01179

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01178 and MPMX19_01179 overlap by 4 nucleotidesMPMX19_01179 and MPMX19_01180 overlap by 1 nucleotidesMPMX19_01180 and MPMX19_01181 are separated by 8 nucleotides MPMX19_01178: MPMX19_01178 - hypothetical protein, at 1,219,207 to 1,221,258 _01178 MPMX19_01179: MPMX19_01179 - hypothetical protein, at 1,221,255 to 1,221,623 _01179 MPMX19_01180: MPMX19_01180 - hypothetical protein, at 1,221,623 to 1,221,871 _01180 MPMX19_01181: MPMX19_01181 - hypothetical protein, at 1,221,880 to 1,223,589 _01181 Position (kb) 1221 1222Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1220.312 kb on + strand, within MPMX19_01178at 1220.312 kb on + strand, within MPMX19_01178at 1220.313 kb on - strand, within MPMX19_01178at 1220.313 kb on - strand, within MPMX19_01178at 1220.313 kb on - strand, within MPMX19_01178at 1220.313 kb on - strand, within MPMX19_01178at 1220.390 kb on + strand, within MPMX19_01178at 1220.390 kb on + strand, within MPMX19_01178at 1220.391 kb on - strand, within MPMX19_01178at 1220.391 kb on - strand, within MPMX19_01178at 1220.453 kb on + strand, within MPMX19_01178at 1220.453 kb on + strand, within MPMX19_01178at 1220.453 kb on + strand, within MPMX19_01178at 1220.453 kb on + strand, within MPMX19_01178at 1220.453 kb on + strand, within MPMX19_01178at 1220.453 kb on + strand, within MPMX19_01178at 1220.454 kb on - strand, within MPMX19_01178at 1220.454 kb on - strand, within MPMX19_01178at 1220.454 kb on - strand, within MPMX19_01178at 1220.454 kb on - strand, within MPMX19_01178at 1220.480 kb on - strand, within MPMX19_01178at 1220.548 kb on + strand, within MPMX19_01178at 1220.548 kb on + strand, within MPMX19_01178at 1220.548 kb on + strand, within MPMX19_01178at 1220.830 kb on + strand, within MPMX19_01178at 1220.831 kb on - strand, within MPMX19_01178at 1220.933 kb on + strand, within MPMX19_01178at 1220.933 kb on + strand, within MPMX19_01178at 1220.934 kb on - strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.988 kb on + strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.989 kb on - strand, within MPMX19_01178at 1220.990 kb on + strand, within MPMX19_01178at 1220.990 kb on + strand, within MPMX19_01178at 1220.990 kb on + strand, within MPMX19_01178at 1220.990 kb on + strand, within MPMX19_01178at 1220.990 kb on + strand, within MPMX19_01178at 1220.990 kb on + strand, within MPMX19_01178at 1220.991 kb on - strand, within MPMX19_01178at 1220.991 kb on - strand, within MPMX19_01178at 1220.991 kb on - strand, within MPMX19_01178at 1221.163 kb on + strandat 1221.164 kb on - strandat 1221.164 kb on - strandat 1221.164 kb on - strandat 1221.234 kb on + strandat 1221.234 kb on + strandat 1221.235 kb on - strandat 1221.385 kb on + strand, within MPMX19_01179at 1221.987 kb on + strandat 1221.987 kb on + strandat 1221.987 kb on + strandat 1221.987 kb on + strandat 1221.987 kb on + strandat 1221.987 kb on + strandat 1221.987 kb on + strandat 1221.987 kb on + strandat 1221.987 kb on + strandat 1221.988 kb on - strandat 1221.988 kb on - strandat 1221.988 kb on - strandat 1221.988 kb on - strandat 1221.988 kb on - strandat 1221.988 kb on - strandat 1221.988 kb on - strandat 1221.993 kb on + strandat 1221.993 kb on + strandat 1221.993 kb on + strandat 1221.993 kb on + strandat 1221.994 kb on - strandat 1221.994 kb on - strandat 1221.994 kb on - strandat 1222.016 kb on + strandat 1222.016 kb on + strandat 1222.016 kb on + strandat 1222.016 kb on + strandat 1222.016 kb on + strandat 1222.016 kb on + strandat 1222.016 kb on + strandat 1222.016 kb on + strandat 1222.016 kb on + strandat 1222.016 kb on + strandat 1222.016 kb on + strandat 1222.016 kb on + strandat 1222.016 kb on + strandat 1222.016 kb on + strandat 1222.016 kb on + strandat 1222.016 kb on + strandat 1222.017 kb on - strandat 1222.017 kb on - strandat 1222.017 kb on - strandat 1222.017 kb on - strandat 1222.017 kb on - strandat 1222.017 kb on - strandat 1222.017 kb on - strandat 1222.017 kb on - strandat 1222.017 kb on - strandat 1222.017 kb on - strandat 1222.017 kb on - strandat 1222.017 kb on - strandat 1222.017 kb on - strandat 1222.017 kb on - strandat 1222.017 kb on - strandat 1222.017 kb on - strandat 1222.103 kb on + strand, within MPMX19_01181at 1222.190 kb on + strand, within MPMX19_01181at 1222.191 kb on - strand, within MPMX19_01181at 1222.246 kb on - strand, within MPMX19_01181at 1222.246 kb on - strand, within MPMX19_01181at 1222.469 kb on + strand, within MPMX19_01181at 1222.469 kb on + strand, within MPMX19_01181

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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1,220,312 + MPMX19_01178 0.54 +0.2
1,220,312 + MPMX19_01178 0.54 -0.1
1,220,313 - MPMX19_01178 0.54 -2.0
1,220,313 - MPMX19_01178 0.54 -0.7
1,220,313 - MPMX19_01178 0.54 -0.5
1,220,313 - MPMX19_01178 0.54 +0.2
1,220,390 + MPMX19_01178 0.58 +0.6
1,220,390 + MPMX19_01178 0.58 -1.3
1,220,391 - MPMX19_01178 0.58 +0.3
1,220,391 - MPMX19_01178 0.58 -1.2
1,220,453 + MPMX19_01178 0.61 -0.2
1,220,453 + MPMX19_01178 0.61 -2.3
1,220,453 + MPMX19_01178 0.61 +0.5
1,220,453 + MPMX19_01178 0.61 -0.3
1,220,453 + MPMX19_01178 0.61 +1.0
1,220,453 + MPMX19_01178 0.61 +0.1
1,220,454 - MPMX19_01178 0.61 -0.3
1,220,454 - MPMX19_01178 0.61 -1.1
1,220,454 - MPMX19_01178 0.61 -0.2
1,220,454 - MPMX19_01178 0.61 -0.4
1,220,480 - MPMX19_01178 0.62 -1.1
1,220,548 + MPMX19_01178 0.65 -1.0
1,220,548 + MPMX19_01178 0.65 -1.3
1,220,548 + MPMX19_01178 0.65 -0.0
1,220,830 + MPMX19_01178 0.79 -0.0
1,220,831 - MPMX19_01178 0.79 -1.5
1,220,933 + MPMX19_01178 0.84 +0.7
1,220,933 + MPMX19_01178 0.84 +0.2
1,220,934 - MPMX19_01178 0.84 -1.1
1,220,988 + MPMX19_01178 0.87 +1.0
1,220,988 + MPMX19_01178 0.87 -0.6
1,220,988 + MPMX19_01178 0.87 -1.0
1,220,988 + MPMX19_01178 0.87 +1.0
1,220,988 + MPMX19_01178 0.87 -1.5
1,220,988 + MPMX19_01178 0.87 +0.4
1,220,988 + MPMX19_01178 0.87 -0.9
1,220,988 + MPMX19_01178 0.87 +0.1
1,220,988 + MPMX19_01178 0.87 -0.8
1,220,988 + MPMX19_01178 0.87 -0.9
1,220,988 + MPMX19_01178 0.87 +0.1
1,220,988 + MPMX19_01178 0.87 -0.5
1,220,988 + MPMX19_01178 0.87 -1.0
1,220,988 + MPMX19_01178 0.87 -2.7
1,220,988 + MPMX19_01178 0.87 +0.1
1,220,988 + MPMX19_01178 0.87 -1.5
1,220,988 + MPMX19_01178 0.87 +0.8
1,220,988 + MPMX19_01178 0.87 -2.0
1,220,988 + MPMX19_01178 0.87 -2.5
1,220,988 + MPMX19_01178 0.87 -0.0
1,220,988 + MPMX19_01178 0.87 -0.7
1,220,988 + MPMX19_01178 0.87 -0.6
1,220,988 + MPMX19_01178 0.87 -0.6
1,220,988 + MPMX19_01178 0.87 -1.3
1,220,989 - MPMX19_01178 0.87 -1.1
1,220,989 - MPMX19_01178 0.87 -1.3
1,220,989 - MPMX19_01178 0.87 -2.0
1,220,989 - MPMX19_01178 0.87 -0.5
1,220,989 - MPMX19_01178 0.87 -0.7
1,220,989 - MPMX19_01178 0.87 -0.3
1,220,989 - MPMX19_01178 0.87 -1.9
1,220,989 - MPMX19_01178 0.87 -0.2
1,220,989 - MPMX19_01178 0.87 -0.6
1,220,989 - MPMX19_01178 0.87 -1.8
1,220,989 - MPMX19_01178 0.87 -1.5
1,220,989 - MPMX19_01178 0.87 -1.2
1,220,989 - MPMX19_01178 0.87 +1.4
1,220,989 - MPMX19_01178 0.87 -0.6
1,220,989 - MPMX19_01178 0.87 +1.5
1,220,989 - MPMX19_01178 0.87 -1.2
1,220,989 - MPMX19_01178 0.87 -1.7
1,220,989 - MPMX19_01178 0.87 +0.3
1,220,989 - MPMX19_01178 0.87 -1.3
1,220,989 - MPMX19_01178 0.87 -1.6
1,220,989 - MPMX19_01178 0.87 -0.7
1,220,989 - MPMX19_01178 0.87 -1.7
1,220,989 - MPMX19_01178 0.87 -1.1
1,220,990 + MPMX19_01178 0.87 +0.3
1,220,990 + MPMX19_01178 0.87 -0.7
1,220,990 + MPMX19_01178 0.87 -1.2
1,220,990 + MPMX19_01178 0.87 +0.3
1,220,990 + MPMX19_01178 0.87 -0.6
1,220,990 + MPMX19_01178 0.87 +0.4
1,220,991 - MPMX19_01178 0.87 -0.3
1,220,991 - MPMX19_01178 0.87 -1.2
1,220,991 - MPMX19_01178 0.87 -0.9
1,221,163 + -0.7
1,221,164 - -0.8
1,221,164 - -0.3
1,221,164 - -2.3
1,221,234 + +0.7
1,221,234 + -0.0
1,221,235 - +0.4
1,221,385 + MPMX19_01179 0.35 -0.0
1,221,987 + -0.1
1,221,987 + -0.6
1,221,987 + +1.1
1,221,987 + -0.6
1,221,987 + -0.0
1,221,987 + +0.5
1,221,987 + -1.0
1,221,987 + +2.0
1,221,987 + -3.1
1,221,988 - -0.3
1,221,988 - -1.5
1,221,988 - -1.0
1,221,988 - -0.0
1,221,988 - -0.5
1,221,988 - -0.2
1,221,988 - -0.1
1,221,993 + -0.4
1,221,993 + +1.1
1,221,993 + -1.2
1,221,993 + +0.2
1,221,994 - -0.8
1,221,994 - -2.0
1,221,994 - -1.4
1,222,016 + -1.3
1,222,016 + +0.6
1,222,016 + +1.0
1,222,016 + +0.2
1,222,016 + +0.4
1,222,016 + -1.4
1,222,016 + -0.1
1,222,016 + +0.2
1,222,016 + -1.3
1,222,016 + +0.8
1,222,016 + +0.6
1,222,016 + +0.3
1,222,016 + -1.0
1,222,016 + -0.9
1,222,016 + -0.0
1,222,016 + -0.8
1,222,017 - -0.2
1,222,017 - -1.7
1,222,017 - -0.2
1,222,017 - -1.9
1,222,017 - -1.3
1,222,017 - +1.4
1,222,017 - -1.6
1,222,017 - -1.5
1,222,017 - -0.5
1,222,017 - +0.3
1,222,017 - -1.8
1,222,017 - -1.3
1,222,017 - -0.4
1,222,017 - -1.0
1,222,017 - +1.6
1,222,017 - -0.1
1,222,103 + MPMX19_01181 0.13 +0.2
1,222,190 + MPMX19_01181 0.18 -1.2
1,222,191 - MPMX19_01181 0.18 +1.0
1,222,246 - MPMX19_01181 0.21 +0.3
1,222,246 - MPMX19_01181 0.21 -1.0
1,222,469 + MPMX19_01181 0.34 +0.2
1,222,469 + MPMX19_01181 0.34 -0.0

Or see this region's nucleotide sequence