Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01145 and MPMX19_01146 overlap by 25 nucleotides MPMX19_01146 and MPMX19_01147 are separated by 433 nucleotides
MPMX19_01145: MPMX19_01145 - CCA-adding enzyme, at 1,180,519 to 1,181,811
_01145
MPMX19_01146: MPMX19_01146 - hypothetical protein, at 1,181,787 to 1,182,998
_01146
MPMX19_01147: MPMX19_01147 - A-factor type gamma-butyrolactone 1'-reductase (1S-forming), at 1,183,432 to 1,184,196
_01147
Position (kb)
1181
1182
1183 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1181.830 kb on + strand at 1181.830 kb on + strand at 1181.830 kb on + strand at 1181.831 kb on - strand at 1181.831 kb on - strand at 1181.992 kb on + strand, within MPMX19_01146 at 1181.992 kb on + strand, within MPMX19_01146 at 1181.992 kb on + strand, within MPMX19_01146 at 1181.992 kb on + strand, within MPMX19_01146 at 1181.992 kb on + strand, within MPMX19_01146 at 1181.992 kb on + strand, within MPMX19_01146 at 1181.992 kb on + strand, within MPMX19_01146 at 1181.992 kb on + strand, within MPMX19_01146 at 1181.992 kb on + strand, within MPMX19_01146 at 1181.992 kb on + strand, within MPMX19_01146 at 1181.992 kb on + strand, within MPMX19_01146 at 1181.992 kb on + strand, within MPMX19_01146 at 1181.992 kb on + strand, within MPMX19_01146 at 1181.992 kb on + strand, within MPMX19_01146 at 1181.993 kb on - strand, within MPMX19_01146 at 1181.993 kb on - strand, within MPMX19_01146 at 1181.993 kb on - strand, within MPMX19_01146 at 1181.993 kb on - strand, within MPMX19_01146 at 1181.993 kb on - strand, within MPMX19_01146 at 1181.993 kb on - strand, within MPMX19_01146 at 1181.993 kb on - strand, within MPMX19_01146 at 1181.993 kb on - strand, within MPMX19_01146 at 1182.121 kb on + strand, within MPMX19_01146 at 1182.121 kb on + strand, within MPMX19_01146 at 1182.121 kb on + strand, within MPMX19_01146 at 1182.121 kb on + strand, within MPMX19_01146 at 1182.122 kb on - strand, within MPMX19_01146 at 1182.122 kb on - strand, within MPMX19_01146 at 1182.122 kb on - strand, within MPMX19_01146 at 1182.122 kb on - strand, within MPMX19_01146 at 1182.122 kb on - strand, within MPMX19_01146 at 1182.122 kb on - strand, within MPMX19_01146 at 1182.122 kb on - strand, within MPMX19_01146 at 1182.122 kb on - strand, within MPMX19_01146 at 1182.122 kb on - strand, within MPMX19_01146 at 1182.122 kb on - strand, within MPMX19_01146 at 1182.253 kb on + strand, within MPMX19_01146 at 1182.253 kb on + strand, within MPMX19_01146 at 1182.253 kb on + strand, within MPMX19_01146 at 1182.253 kb on + strand, within MPMX19_01146 at 1182.253 kb on + strand, within MPMX19_01146 at 1182.253 kb on + strand, within MPMX19_01146 at 1182.254 kb on - strand, within MPMX19_01146 at 1182.254 kb on - strand, within MPMX19_01146 at 1182.254 kb on - strand, within MPMX19_01146 at 1182.254 kb on - strand, within MPMX19_01146 at 1182.254 kb on - strand, within MPMX19_01146 at 1182.254 kb on - strand, within MPMX19_01146 at 1182.254 kb on - strand, within MPMX19_01146 at 1182.254 kb on - strand, within MPMX19_01146 at 1182.325 kb on + strand, within MPMX19_01146 at 1182.325 kb on + strand, within MPMX19_01146 at 1182.325 kb on + strand, within MPMX19_01146 at 1182.326 kb on - strand, within MPMX19_01146 at 1182.326 kb on - strand, within MPMX19_01146 at 1182.326 kb on - strand, within MPMX19_01146 at 1182.326 kb on - strand, within MPMX19_01146 at 1182.326 kb on - strand, within MPMX19_01146 at 1182.613 kb on + strand, within MPMX19_01146 at 1182.613 kb on + strand, within MPMX19_01146 at 1182.613 kb on + strand, within MPMX19_01146 at 1182.613 kb on + strand, within MPMX19_01146 at 1182.613 kb on + strand, within MPMX19_01146 at 1182.613 kb on + strand, within MPMX19_01146 at 1182.613 kb on + strand, within MPMX19_01146 at 1182.613 kb on + strand, within MPMX19_01146 at 1182.613 kb on + strand, within MPMX19_01146 at 1182.613 kb on + strand, within MPMX19_01146 at 1182.613 kb on + strand, within MPMX19_01146 at 1182.613 kb on + strand, within MPMX19_01146 at 1182.613 kb on + strand, within MPMX19_01146 at 1182.613 kb on + strand, within MPMX19_01146 at 1182.613 kb on + strand, within MPMX19_01146 at 1182.613 kb on + strand, within MPMX19_01146 at 1182.614 kb on - strand, within MPMX19_01146 at 1182.614 kb on - strand, within MPMX19_01146 at 1182.614 kb on - strand, within MPMX19_01146 at 1182.614 kb on - strand, within MPMX19_01146 at 1182.614 kb on - strand, within MPMX19_01146 at 1182.614 kb on - strand, within MPMX19_01146 at 1182.614 kb on - strand, within MPMX19_01146 at 1182.614 kb on - strand, within MPMX19_01146 at 1182.614 kb on - strand, within MPMX19_01146 at 1182.614 kb on - strand, within MPMX19_01146 at 1182.614 kb on - strand, within MPMX19_01146 at 1182.614 kb on - strand, within MPMX19_01146 at 1182.614 kb on - strand, within MPMX19_01146 at 1182.614 kb on - strand, within MPMX19_01146 at 1182.614 kb on - strand, within MPMX19_01146 at 1182.614 kb on - strand, within MPMX19_01146 at 1182.877 kb on + strand at 1182.877 kb on + strand at 1182.878 kb on - strand at 1182.904 kb on + strand at 1182.904 kb on + strand at 1182.904 kb on + strand at 1182.904 kb on + strand at 1182.904 kb on + strand at 1182.904 kb on + strand at 1182.904 kb on + strand at 1182.904 kb on + strand at 1182.904 kb on + strand at 1182.904 kb on + strand at 1182.904 kb on + strand at 1182.905 kb on - strand at 1182.905 kb on - strand at 1182.905 kb on - strand at 1182.905 kb on - strand at 1182.905 kb on - strand at 1182.905 kb on - strand at 1182.905 kb on - strand at 1182.905 kb on - strand at 1182.905 kb on - strand at 1182.905 kb on - strand at 1182.905 kb on - strand at 1182.905 kb on - strand at 1182.986 kb on + strand at 1182.986 kb on + strand at 1182.986 kb on + strand at 1183.100 kb on + strand at 1183.100 kb on + strand at 1183.100 kb on + strand at 1183.101 kb on - strand at 1183.101 kb on - strand at 1183.101 kb on - strand at 1183.177 kb on + strand at 1183.177 kb on + strand at 1183.177 kb on + strand at 1183.177 kb on + strand at 1183.178 kb on - strand at 1183.178 kb on - strand at 1183.178 kb on - strand at 1183.178 kb on - strand at 1183.178 kb on - strand at 1183.178 kb on - strand at 1183.178 kb on - strand at 1183.178 kb on - strand at 1183.250 kb on + strand at 1183.250 kb on + strand at 1183.250 kb on + strand at 1183.250 kb on + strand at 1183.250 kb on + strand at 1183.250 kb on + strand at 1183.250 kb on + strand at 1183.250 kb on + strand at 1183.250 kb on + strand at 1183.250 kb on + strand at 1183.250 kb on + strand at 1183.250 kb on + strand at 1183.251 kb on - strand at 1183.251 kb on - strand at 1183.251 kb on - strand at 1183.251 kb on - strand at 1183.251 kb on - strand at 1183.251 kb on - strand at 1183.251 kb on - strand at 1183.251 kb on - strand at 1183.251 kb on - strand at 1183.251 kb on - strand at 1183.251 kb on - strand at 1183.251 kb on - strand at 1183.285 kb on + strand at 1183.330 kb on + strand at 1183.331 kb on - strand at 1183.331 kb on - strand at 1183.771 kb on - strand, within MPMX19_01147 at 1183.771 kb on - strand, within MPMX19_01147 at 1183.873 kb on - strand, within MPMX19_01147 at 1183.873 kb on - strand, within MPMX19_01147 at 1183.901 kb on - strand, within MPMX19_01147 at 1183.954 kb on + strand, within MPMX19_01147 at 1183.954 kb on + strand, within MPMX19_01147 at 1183.954 kb on + strand, within MPMX19_01147 at 1183.954 kb on + strand, within MPMX19_01147 at 1183.954 kb on + strand, within MPMX19_01147 at 1183.955 kb on - strand, within MPMX19_01147 at 1183.955 kb on - strand, within MPMX19_01147
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 1,181,830 + -1.2 1,181,830 + -0.3 1,181,830 + -0.9 1,181,831 - -0.2 1,181,831 - -0.0 1,181,992 + MPMX19_01146 0.17 -0.0 1,181,992 + MPMX19_01146 0.17 -2.2 1,181,992 + MPMX19_01146 0.17 +0.7 1,181,992 + MPMX19_01146 0.17 -0.7 1,181,992 + MPMX19_01146 0.17 -0.6 1,181,992 + MPMX19_01146 0.17 +0.2 1,181,992 + MPMX19_01146 0.17 +0.6 1,181,992 + MPMX19_01146 0.17 +0.8 1,181,992 + MPMX19_01146 0.17 -0.5 1,181,992 + MPMX19_01146 0.17 -0.3 1,181,992 + MPMX19_01146 0.17 +0.1 1,181,992 + MPMX19_01146 0.17 +0.1 1,181,992 + MPMX19_01146 0.17 -0.8 1,181,992 + MPMX19_01146 0.17 -0.2 1,181,993 - MPMX19_01146 0.17 +0.7 1,181,993 - MPMX19_01146 0.17 +0.4 1,181,993 - MPMX19_01146 0.17 -1.2 1,181,993 - MPMX19_01146 0.17 -0.9 1,181,993 - MPMX19_01146 0.17 -0.8 1,181,993 - MPMX19_01146 0.17 -1.0 1,181,993 - MPMX19_01146 0.17 +0.9 1,181,993 - MPMX19_01146 0.17 -0.1 1,182,121 + MPMX19_01146 0.28 +0.1 1,182,121 + MPMX19_01146 0.28 +0.4 1,182,121 + MPMX19_01146 0.28 -0.3 1,182,121 + MPMX19_01146 0.28 -0.1 1,182,122 - MPMX19_01146 0.28 -0.3 1,182,122 - MPMX19_01146 0.28 -1.7 1,182,122 - MPMX19_01146 0.28 +2.0 1,182,122 - MPMX19_01146 0.28 -0.9 1,182,122 - MPMX19_01146 0.28 -1.3 1,182,122 - MPMX19_01146 0.28 +0.1 1,182,122 - MPMX19_01146 0.28 -1.5 1,182,122 - MPMX19_01146 0.28 +0.1 1,182,122 - MPMX19_01146 0.28 -0.8 1,182,122 - MPMX19_01146 0.28 -0.2 1,182,253 + MPMX19_01146 0.38 -1.3 1,182,253 + MPMX19_01146 0.38 -0.5 1,182,253 + MPMX19_01146 0.38 -0.6 1,182,253 + MPMX19_01146 0.38 -0.7 1,182,253 + MPMX19_01146 0.38 +1.0 1,182,253 + MPMX19_01146 0.38 -0.7 1,182,254 - MPMX19_01146 0.39 +0.2 1,182,254 - MPMX19_01146 0.39 +1.0 1,182,254 - MPMX19_01146 0.39 -1.2 1,182,254 - MPMX19_01146 0.39 +0.6 1,182,254 - MPMX19_01146 0.39 -1.2 1,182,254 - MPMX19_01146 0.39 -0.0 1,182,254 - MPMX19_01146 0.39 +0.3 1,182,254 - MPMX19_01146 0.39 -1.0 1,182,325 + MPMX19_01146 0.44 -0.7 1,182,325 + MPMX19_01146 0.44 +0.2 1,182,325 + MPMX19_01146 0.44 +0.4 1,182,326 - MPMX19_01146 0.44 -1.3 1,182,326 - MPMX19_01146 0.44 -0.2 1,182,326 - MPMX19_01146 0.44 -1.8 1,182,326 - MPMX19_01146 0.44 -1.3 1,182,326 - MPMX19_01146 0.44 -1.5 1,182,613 + MPMX19_01146 0.68 -1.6 1,182,613 + MPMX19_01146 0.68 +0.0 1,182,613 + MPMX19_01146 0.68 -0.9 1,182,613 + MPMX19_01146 0.68 -1.5 1,182,613 + MPMX19_01146 0.68 -0.4 1,182,613 + MPMX19_01146 0.68 +1.3 1,182,613 + MPMX19_01146 0.68 +0.2 1,182,613 + MPMX19_01146 0.68 +1.0 1,182,613 + MPMX19_01146 0.68 -1.8 1,182,613 + MPMX19_01146 0.68 -0.5 1,182,613 + MPMX19_01146 0.68 +0.5 1,182,613 + MPMX19_01146 0.68 -0.6 1,182,613 + MPMX19_01146 0.68 -0.9 1,182,613 + MPMX19_01146 0.68 +1.0 1,182,613 + MPMX19_01146 0.68 +0.4 1,182,613 + MPMX19_01146 0.68 -0.5 1,182,614 - MPMX19_01146 0.68 -0.5 1,182,614 - MPMX19_01146 0.68 +1.1 1,182,614 - MPMX19_01146 0.68 +0.2 1,182,614 - MPMX19_01146 0.68 -1.0 1,182,614 - MPMX19_01146 0.68 -0.9 1,182,614 - MPMX19_01146 0.68 +0.7 1,182,614 - MPMX19_01146 0.68 +0.2 1,182,614 - MPMX19_01146 0.68 -0.7 1,182,614 - MPMX19_01146 0.68 -0.3 1,182,614 - MPMX19_01146 0.68 -0.3 1,182,614 - MPMX19_01146 0.68 -1.2 1,182,614 - MPMX19_01146 0.68 -0.6 1,182,614 - MPMX19_01146 0.68 -0.0 1,182,614 - MPMX19_01146 0.68 -0.1 1,182,614 - MPMX19_01146 0.68 -1.8 1,182,614 - MPMX19_01146 0.68 -0.1 1,182,877 + -0.2 1,182,877 + -0.2 1,182,878 - -0.0 1,182,904 + -1.5 1,182,904 + -1.8 1,182,904 + -0.4 1,182,904 + -1.3 1,182,904 + -0.7 1,182,904 + -2.1 1,182,904 + -1.3 1,182,904 + -0.3 1,182,904 + +1.1 1,182,904 + -0.4 1,182,904 + -0.7 1,182,905 - +0.4 1,182,905 - -1.7 1,182,905 - -0.8 1,182,905 - -0.2 1,182,905 - -0.6 1,182,905 - +0.4 1,182,905 - -0.6 1,182,905 - -0.4 1,182,905 - -0.3 1,182,905 - -2.0 1,182,905 - -0.4 1,182,905 - -0.3 1,182,986 + -0.2 1,182,986 + -0.0 1,182,986 + -2.0 1,183,100 + -1.2 1,183,100 + -1.5 1,183,100 + -0.9 1,183,101 - +0.1 1,183,101 - -0.3 1,183,101 - -1.0 1,183,177 + -0.7 1,183,177 + +1.3 1,183,177 + -0.8 1,183,177 + +0.1 1,183,178 - -1.6 1,183,178 - -0.3 1,183,178 - -1.2 1,183,178 - +0.9 1,183,178 - -0.4 1,183,178 - +0.6 1,183,178 - -0.2 1,183,178 - -2.6 1,183,250 + -0.7 1,183,250 + -0.3 1,183,250 + -1.5 1,183,250 + -1.0 1,183,250 + -1.4 1,183,250 + -0.0 1,183,250 + -0.3 1,183,250 + -1.2 1,183,250 + -1.8 1,183,250 + -0.0 1,183,250 + -0.0 1,183,250 + -1.5 1,183,251 - -0.7 1,183,251 - -0.7 1,183,251 - -0.5 1,183,251 - -0.0 1,183,251 - -0.3 1,183,251 - -2.6 1,183,251 - -0.0 1,183,251 - +2.0 1,183,251 - -0.3 1,183,251 - +0.6 1,183,251 - -2.0 1,183,251 - -0.4 1,183,285 + -0.3 1,183,330 + -1.1 1,183,331 - -2.1 1,183,331 - -0.4 1,183,771 - MPMX19_01147 0.44 -0.6 1,183,771 - MPMX19_01147 0.44 -1.2 1,183,873 - MPMX19_01147 0.58 -0.8 1,183,873 - MPMX19_01147 0.58 +1.3 1,183,901 - MPMX19_01147 0.61 +0.4 1,183,954 + MPMX19_01147 0.68 -0.6 1,183,954 + MPMX19_01147 0.68 +0.1 1,183,954 + MPMX19_01147 0.68 -0.0 1,183,954 + MPMX19_01147 0.68 +0.4 1,183,954 + MPMX19_01147 0.68 -1.1 1,183,955 - MPMX19_01147 0.68 -0.8 1,183,955 - MPMX19_01147 0.68 -0.6
Or see this region's nucleotide sequence