Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01104

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01102 and MPMX19_01103 are separated by 42 nucleotidesMPMX19_01103 and MPMX19_01104 are separated by 62 nucleotidesMPMX19_01104 and MPMX19_01105 are separated by 36 nucleotidesMPMX19_01105 and MPMX19_01106 are separated by 33 nucleotidesMPMX19_01106 and MPMX19_01107 are separated by 42 nucleotides MPMX19_01102: MPMX19_01102 - Dihydrolipoyl dehydrogenase, at 1,137,149 to 1,138,546 _01102 MPMX19_01103: MPMX19_01103 - hypothetical protein, at 1,138,589 to 1,139,074 _01103 MPMX19_01104: MPMX19_01104 - Lipoyl synthase, at 1,139,137 to 1,140,093 _01104 MPMX19_01105: MPMX19_01105 - Persistence and stress-resistance toxin PasT, at 1,140,130 to 1,140,585 _01105 MPMX19_01106: MPMX19_01106 - hypothetical protein, at 1,140,619 to 1,140,807 _01106 MPMX19_01107: MPMX19_01107 - Nicotinamide-nucleotide amidohydrolase PncC, at 1,140,850 to 1,141,353 _01107 Position (kb) 1139 1140 1141Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1138.259 kb on + strand, within MPMX19_01102at 1138.544 kb on + strandat 1138.545 kb on - strandat 1138.545 kb on - strandat 1138.545 kb on - strandat 1138.549 kb on - strandat 1138.549 kb on - strandat 1138.549 kb on - strandat 1138.549 kb on - strandat 1138.549 kb on - strandat 1138.549 kb on - strandat 1138.549 kb on - strandat 1138.907 kb on + strand, within MPMX19_01103at 1138.907 kb on + strand, within MPMX19_01103at 1138.907 kb on + strand, within MPMX19_01103at 1138.907 kb on + strand, within MPMX19_01103at 1138.907 kb on + strand, within MPMX19_01103at 1138.907 kb on + strand, within MPMX19_01103at 1138.908 kb on - strand, within MPMX19_01103at 1138.930 kb on + strand, within MPMX19_01103at 1138.930 kb on + strand, within MPMX19_01103at 1138.930 kb on + strand, within MPMX19_01103at 1138.930 kb on + strand, within MPMX19_01103at 1138.930 kb on + strand, within MPMX19_01103at 1138.930 kb on + strand, within MPMX19_01103at 1138.930 kb on + strand, within MPMX19_01103at 1138.930 kb on + strand, within MPMX19_01103at 1138.930 kb on + strand, within MPMX19_01103at 1138.930 kb on + strand, within MPMX19_01103at 1138.931 kb on - strand, within MPMX19_01103at 1138.931 kb on - strand, within MPMX19_01103at 1138.931 kb on - strand, within MPMX19_01103at 1138.931 kb on - strand, within MPMX19_01103at 1138.931 kb on - strand, within MPMX19_01103at 1138.931 kb on - strand, within MPMX19_01103at 1138.931 kb on - strand, within MPMX19_01103at 1138.931 kb on - strand, within MPMX19_01103at 1138.931 kb on - strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.932 kb on + strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.933 kb on - strand, within MPMX19_01103at 1138.934 kb on + strand, within MPMX19_01103at 1138.934 kb on + strand, within MPMX19_01103at 1138.934 kb on + strand, within MPMX19_01103at 1138.934 kb on + strand, within MPMX19_01103at 1138.934 kb on + strand, within MPMX19_01103at 1138.934 kb on + strand, within MPMX19_01103at 1138.934 kb on + strand, within MPMX19_01103at 1138.934 kb on + strand, within MPMX19_01103at 1138.934 kb on + strand, within MPMX19_01103at 1138.935 kb on - strand, within MPMX19_01103at 1138.935 kb on - strand, within MPMX19_01103at 1138.935 kb on - strand, within MPMX19_01103at 1138.935 kb on - strand, within MPMX19_01103at 1138.935 kb on - strand, within MPMX19_01103at 1138.935 kb on - strand, within MPMX19_01103at 1138.935 kb on - strand, within MPMX19_01103at 1138.935 kb on - strand, within MPMX19_01103at 1139.090 kb on + strandat 1139.090 kb on + strandat 1139.090 kb on + strandat 1139.090 kb on + strandat 1139.090 kb on + strandat 1139.090 kb on + strandat 1139.090 kb on + strandat 1139.090 kb on + strandat 1139.090 kb on + strandat 1139.090 kb on + strandat 1139.090 kb on + strandat 1139.090 kb on + strandat 1139.090 kb on + strandat 1139.090 kb on + strandat 1139.090 kb on + strandat 1139.090 kb on + strandat 1139.090 kb on + strandat 1140.108 kb on + strandat 1140.108 kb on + strandat 1140.109 kb on - strandat 1140.109 kb on - strandat 1140.109 kb on - strandat 1140.553 kb on + strandat 1140.553 kb on + strandat 1140.749 kb on + strand, within MPMX19_01106at 1140.822 kb on + strandat 1140.822 kb on + strandat 1140.947 kb on + strand, within MPMX19_01107at 1140.947 kb on + strand, within MPMX19_01107at 1140.947 kb on + strand, within MPMX19_01107at 1140.947 kb on + strand, within MPMX19_01107at 1140.947 kb on + strand, within MPMX19_01107at 1140.947 kb on + strand, within MPMX19_01107at 1140.947 kb on + strand, within MPMX19_01107at 1140.947 kb on + strand, within MPMX19_01107at 1140.947 kb on + strand, within MPMX19_01107at 1140.947 kb on + strand, within MPMX19_01107at 1140.948 kb on - strand, within MPMX19_01107at 1140.948 kb on - strand, within MPMX19_01107at 1140.948 kb on - strand, within MPMX19_01107at 1140.948 kb on - strand, within MPMX19_01107at 1140.948 kb on - strand, within MPMX19_01107at 1140.948 kb on - strand, within MPMX19_01107at 1140.948 kb on - strand, within MPMX19_01107at 1140.948 kb on - strand, within MPMX19_01107at 1140.948 kb on - strand, within MPMX19_01107at 1140.948 kb on - strand, within MPMX19_01107at 1140.948 kb on - strand, within MPMX19_01107at 1140.948 kb on - strand, within MPMX19_01107at 1140.948 kb on - strand, within MPMX19_01107at 1140.992 kb on + strand, within MPMX19_01107at 1140.992 kb on + strand, within MPMX19_01107at 1140.992 kb on + strand, within MPMX19_01107at 1140.992 kb on + strand, within MPMX19_01107at 1140.992 kb on + strand, within MPMX19_01107at 1140.992 kb on + strand, within MPMX19_01107at 1140.992 kb on + strand, within MPMX19_01107at 1140.992 kb on + strand, within MPMX19_01107at 1140.992 kb on + strand, within MPMX19_01107at 1140.992 kb on + strand, within MPMX19_01107at 1140.992 kb on + strand, within MPMX19_01107at 1140.992 kb on + strand, within MPMX19_01107at 1140.992 kb on + strand, within MPMX19_01107at 1140.992 kb on + strand, within MPMX19_01107at 1140.992 kb on + strand, within MPMX19_01107at 1140.993 kb on - strand, within MPMX19_01107at 1140.993 kb on - strand, within MPMX19_01107at 1140.993 kb on - strand, within MPMX19_01107at 1140.993 kb on - strand, within MPMX19_01107at 1140.993 kb on - strand, within MPMX19_01107at 1140.993 kb on - strand, within MPMX19_01107at 1140.993 kb on - strand, within MPMX19_01107at 1140.993 kb on - strand, within MPMX19_01107at 1140.993 kb on - strand, within MPMX19_01107at 1140.993 kb on - strand, within MPMX19_01107at 1140.993 kb on - strand, within MPMX19_01107at 1140.993 kb on - strand, within MPMX19_01107at 1140.993 kb on - strand, within MPMX19_01107at 1140.993 kb on - strand, within MPMX19_01107

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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1,138,259 + MPMX19_01102 0.79 -0.9
1,138,544 + +1.5
1,138,545 - +1.2
1,138,545 - -0.0
1,138,545 - +0.7
1,138,549 - -1.6
1,138,549 - +0.2
1,138,549 - +0.3
1,138,549 - -0.8
1,138,549 - -0.3
1,138,549 - -0.8
1,138,549 - +1.3
1,138,907 + MPMX19_01103 0.65 -0.2
1,138,907 + MPMX19_01103 0.65 -1.0
1,138,907 + MPMX19_01103 0.65 -2.5
1,138,907 + MPMX19_01103 0.65 +0.1
1,138,907 + MPMX19_01103 0.65 +1.6
1,138,907 + MPMX19_01103 0.65 -3.2
1,138,908 - MPMX19_01103 0.66 -1.0
1,138,930 + MPMX19_01103 0.70 +0.3
1,138,930 + MPMX19_01103 0.70 -1.0
1,138,930 + MPMX19_01103 0.70 -1.0
1,138,930 + MPMX19_01103 0.70 -0.8
1,138,930 + MPMX19_01103 0.70 +0.6
1,138,930 + MPMX19_01103 0.70 -1.2
1,138,930 + MPMX19_01103 0.70 -1.7
1,138,930 + MPMX19_01103 0.70 -1.1
1,138,930 + MPMX19_01103 0.70 -0.6
1,138,930 + MPMX19_01103 0.70 -1.3
1,138,931 - MPMX19_01103 0.70 -0.6
1,138,931 - MPMX19_01103 0.70 -1.0
1,138,931 - MPMX19_01103 0.70 -1.2
1,138,931 - MPMX19_01103 0.70 +0.2
1,138,931 - MPMX19_01103 0.70 +1.0
1,138,931 - MPMX19_01103 0.70 -0.1
1,138,931 - MPMX19_01103 0.70 +2.6
1,138,931 - MPMX19_01103 0.70 -0.6
1,138,931 - MPMX19_01103 0.70 +0.4
1,138,932 + MPMX19_01103 0.71 -0.6
1,138,932 + MPMX19_01103 0.71 -1.7
1,138,932 + MPMX19_01103 0.71 +0.6
1,138,932 + MPMX19_01103 0.71 -1.0
1,138,932 + MPMX19_01103 0.71 -0.2
1,138,932 + MPMX19_01103 0.71 -1.1
1,138,932 + MPMX19_01103 0.71 -0.7
1,138,932 + MPMX19_01103 0.71 +0.4
1,138,932 + MPMX19_01103 0.71 -1.2
1,138,932 + MPMX19_01103 0.71 -2.4
1,138,932 + MPMX19_01103 0.71 -0.2
1,138,932 + MPMX19_01103 0.71 -2.0
1,138,932 + MPMX19_01103 0.71 -2.5
1,138,932 + MPMX19_01103 0.71 -0.0
1,138,932 + MPMX19_01103 0.71 -0.3
1,138,932 + MPMX19_01103 0.71 -0.1
1,138,932 + MPMX19_01103 0.71 -0.6
1,138,932 + MPMX19_01103 0.71 -0.2
1,138,932 + MPMX19_01103 0.71 -0.0
1,138,932 + MPMX19_01103 0.71 +1.6
1,138,932 + MPMX19_01103 0.71 +0.3
1,138,932 + MPMX19_01103 0.71 -0.1
1,138,932 + MPMX19_01103 0.71 -1.1
1,138,932 + MPMX19_01103 0.71 -0.1
1,138,932 + MPMX19_01103 0.71 -0.9
1,138,932 + MPMX19_01103 0.71 +0.4
1,138,932 + MPMX19_01103 0.71 -1.1
1,138,932 + MPMX19_01103 0.71 -0.1
1,138,932 + MPMX19_01103 0.71 -2.2
1,138,932 + MPMX19_01103 0.71 +1.0
1,138,932 + MPMX19_01103 0.71 +0.3
1,138,932 + MPMX19_01103 0.71 -0.1
1,138,932 + MPMX19_01103 0.71 -0.3
1,138,932 + MPMX19_01103 0.71 -0.3
1,138,932 + MPMX19_01103 0.71 +0.5
1,138,932 + MPMX19_01103 0.71 -0.7
1,138,932 + MPMX19_01103 0.71 -0.9
1,138,932 + MPMX19_01103 0.71 -0.7
1,138,933 - MPMX19_01103 0.71 +0.1
1,138,933 - MPMX19_01103 0.71 -1.3
1,138,933 - MPMX19_01103 0.71 +0.7
1,138,933 - MPMX19_01103 0.71 +1.0
1,138,933 - MPMX19_01103 0.71 -2.3
1,138,933 - MPMX19_01103 0.71 -0.0
1,138,933 - MPMX19_01103 0.71 +0.1
1,138,933 - MPMX19_01103 0.71 -0.0
1,138,933 - MPMX19_01103 0.71 -0.3
1,138,933 - MPMX19_01103 0.71 +0.2
1,138,933 - MPMX19_01103 0.71 +0.0
1,138,933 - MPMX19_01103 0.71 +0.7
1,138,933 - MPMX19_01103 0.71 -1.4
1,138,933 - MPMX19_01103 0.71 -0.6
1,138,933 - MPMX19_01103 0.71 -0.8
1,138,933 - MPMX19_01103 0.71 -1.5
1,138,933 - MPMX19_01103 0.71 -0.4
1,138,933 - MPMX19_01103 0.71 -0.3
1,138,933 - MPMX19_01103 0.71 -0.8
1,138,933 - MPMX19_01103 0.71 +0.4
1,138,933 - MPMX19_01103 0.71 -0.5
1,138,933 - MPMX19_01103 0.71 -0.1
1,138,933 - MPMX19_01103 0.71 +0.9
1,138,933 - MPMX19_01103 0.71 -1.5
1,138,933 - MPMX19_01103 0.71 -0.2
1,138,933 - MPMX19_01103 0.71 -0.6
1,138,934 + MPMX19_01103 0.71 +0.4
1,138,934 + MPMX19_01103 0.71 -0.3
1,138,934 + MPMX19_01103 0.71 -0.0
1,138,934 + MPMX19_01103 0.71 -1.0
1,138,934 + MPMX19_01103 0.71 -1.0
1,138,934 + MPMX19_01103 0.71 -0.6
1,138,934 + MPMX19_01103 0.71 -0.6
1,138,934 + MPMX19_01103 0.71 -0.6
1,138,934 + MPMX19_01103 0.71 -1.2
1,138,935 - MPMX19_01103 0.71 -2.0
1,138,935 - MPMX19_01103 0.71 -1.6
1,138,935 - MPMX19_01103 0.71 -1.3
1,138,935 - MPMX19_01103 0.71 +0.7
1,138,935 - MPMX19_01103 0.71 -0.7
1,138,935 - MPMX19_01103 0.71 -1.9
1,138,935 - MPMX19_01103 0.71 -0.2
1,138,935 - MPMX19_01103 0.71 +0.2
1,139,090 + -0.4
1,139,090 + +0.6
1,139,090 + -2.4
1,139,090 + -0.0
1,139,090 + -0.5
1,139,090 + -0.8
1,139,090 + -1.7
1,139,090 + +0.1
1,139,090 + -1.3
1,139,090 + -1.8
1,139,090 + -0.2
1,139,090 + -0.8
1,139,090 + -0.0
1,139,090 + +0.7
1,139,090 + -0.0
1,139,090 + -1.8
1,139,090 + -1.7
1,140,108 + -0.4
1,140,108 + -0.5
1,140,109 - +0.4
1,140,109 - +0.4
1,140,109 - -0.0
1,140,553 + -0.2
1,140,553 + +0.2
1,140,749 + MPMX19_01106 0.69 -2.7
1,140,822 + -0.9
1,140,822 + -0.6
1,140,947 + MPMX19_01107 0.19 -0.9
1,140,947 + MPMX19_01107 0.19 +0.8
1,140,947 + MPMX19_01107 0.19 +0.9
1,140,947 + MPMX19_01107 0.19 -1.2
1,140,947 + MPMX19_01107 0.19 -0.3
1,140,947 + MPMX19_01107 0.19 -0.2
1,140,947 + MPMX19_01107 0.19 +1.2
1,140,947 + MPMX19_01107 0.19 +0.3
1,140,947 + MPMX19_01107 0.19 -0.3
1,140,947 + MPMX19_01107 0.19 +0.6
1,140,948 - MPMX19_01107 0.19 -0.3
1,140,948 - MPMX19_01107 0.19 +0.4
1,140,948 - MPMX19_01107 0.19 -1.5
1,140,948 - MPMX19_01107 0.19 -0.1
1,140,948 - MPMX19_01107 0.19 -0.1
1,140,948 - MPMX19_01107 0.19 +0.0
1,140,948 - MPMX19_01107 0.19 +0.0
1,140,948 - MPMX19_01107 0.19 +0.3
1,140,948 - MPMX19_01107 0.19 -1.6
1,140,948 - MPMX19_01107 0.19 +0.3
1,140,948 - MPMX19_01107 0.19 +0.4
1,140,948 - MPMX19_01107 0.19 +0.7
1,140,948 - MPMX19_01107 0.19 -0.4
1,140,992 + MPMX19_01107 0.28 -1.6
1,140,992 + MPMX19_01107 0.28 -0.7
1,140,992 + MPMX19_01107 0.28 -0.6
1,140,992 + MPMX19_01107 0.28 -0.3
1,140,992 + MPMX19_01107 0.28 -1.0
1,140,992 + MPMX19_01107 0.28 +0.4
1,140,992 + MPMX19_01107 0.28 -1.5
1,140,992 + MPMX19_01107 0.28 -1.7
1,140,992 + MPMX19_01107 0.28 -0.4
1,140,992 + MPMX19_01107 0.28 +0.8
1,140,992 + MPMX19_01107 0.28 +0.5
1,140,992 + MPMX19_01107 0.28 -0.1
1,140,992 + MPMX19_01107 0.28 -2.0
1,140,992 + MPMX19_01107 0.28 -1.0
1,140,992 + MPMX19_01107 0.28 -0.2
1,140,993 - MPMX19_01107 0.28 +0.2
1,140,993 - MPMX19_01107 0.28 -0.7
1,140,993 - MPMX19_01107 0.28 -0.3
1,140,993 - MPMX19_01107 0.28 -1.1
1,140,993 - MPMX19_01107 0.28 -1.2
1,140,993 - MPMX19_01107 0.28 +0.1
1,140,993 - MPMX19_01107 0.28 -0.9
1,140,993 - MPMX19_01107 0.28 -0.2
1,140,993 - MPMX19_01107 0.28 -0.1
1,140,993 - MPMX19_01107 0.28 +0.7
1,140,993 - MPMX19_01107 0.28 -0.5
1,140,993 - MPMX19_01107 0.28 +0.7
1,140,993 - MPMX19_01107 0.28 -1.0
1,140,993 - MPMX19_01107 0.28 -1.2

Or see this region's nucleotide sequence