Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01096 and MPMX19_01097 are separated by 356 nucleotides MPMX19_01097 and MPMX19_01098 are separated by 194 nucleotides MPMX19_01098 and MPMX19_01099 are separated by 78 nucleotides
MPMX19_01096: MPMX19_01096 - hypothetical protein, at 1,131,763 to 1,132,083
_01096
MPMX19_01097: MPMX19_01097 - hypothetical protein, at 1,132,440 to 1,132,811
_01097
MPMX19_01098: MPMX19_01098 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha, at 1,133,006 to 1,134,019
_01098
MPMX19_01099: MPMX19_01099 - 1-deoxy-D-xylulose-5-phosphate synthase, at 1,134,098 to 1,135,471
_01099
Position (kb)
1133
1134
1135 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1132.138 kb on + strand at 1132.139 kb on - strand at 1132.139 kb on - strand at 1132.173 kb on + strand at 1132.173 kb on + strand at 1132.173 kb on + strand at 1132.173 kb on + strand at 1132.173 kb on + strand at 1132.173 kb on + strand at 1132.173 kb on + strand at 1132.174 kb on - strand at 1132.174 kb on - strand at 1132.174 kb on - strand at 1132.174 kb on - strand at 1132.174 kb on - strand at 1132.174 kb on - strand at 1132.174 kb on - strand at 1132.174 kb on - strand at 1132.174 kb on - strand at 1132.174 kb on - strand at 1132.174 kb on - strand at 1132.174 kb on - strand at 1132.222 kb on + strand at 1132.222 kb on + strand at 1132.222 kb on + strand at 1132.223 kb on - strand at 1132.223 kb on - strand at 1132.223 kb on - strand at 1132.223 kb on - strand at 1132.223 kb on - strand at 1132.223 kb on - strand at 1132.223 kb on - strand at 1132.223 kb on - strand at 1132.223 kb on - strand at 1132.336 kb on + strand at 1132.336 kb on + strand at 1132.336 kb on + strand at 1132.337 kb on - strand at 1132.762 kb on + strand, within MPMX19_01097 at 1132.809 kb on + strand at 1132.810 kb on - strand at 1132.810 kb on - strand at 1132.810 kb on - strand at 1132.854 kb on - strand at 1132.897 kb on + strand at 1132.897 kb on + strand at 1132.897 kb on + strand at 1132.911 kb on + strand at 1132.911 kb on + strand at 1133.180 kb on + strand, within MPMX19_01098 at 1134.035 kb on + strand at 1134.035 kb on + strand at 1134.035 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 1,132,138 + -1.8 1,132,139 - +1.0 1,132,139 - +2.0 1,132,173 + +0.7 1,132,173 + -1.2 1,132,173 + -0.7 1,132,173 + -0.1 1,132,173 + -1.0 1,132,173 + -0.2 1,132,173 + -1.0 1,132,174 - -1.5 1,132,174 - -1.6 1,132,174 - -0.4 1,132,174 - -1.7 1,132,174 - -1.4 1,132,174 - +1.2 1,132,174 - -0.5 1,132,174 - -1.1 1,132,174 - -1.3 1,132,174 - +0.1 1,132,174 - -0.3 1,132,174 - -0.1 1,132,222 + -2.8 1,132,222 + +1.0 1,132,222 + +0.4 1,132,223 - -1.2 1,132,223 - -1.5 1,132,223 - +1.2 1,132,223 - +1.1 1,132,223 - -1.5 1,132,223 - +0.4 1,132,223 - -0.3 1,132,223 - +0.7 1,132,223 - -0.1 1,132,336 + -0.4 1,132,336 + -0.7 1,132,336 + -0.8 1,132,337 - -1.1 1,132,762 + MPMX19_01097 0.87 +1.2 1,132,809 + -0.6 1,132,810 - -1.0 1,132,810 - -0.3 1,132,810 - +0.2 1,132,854 - +0.4 1,132,897 + +1.0 1,132,897 + -1.0 1,132,897 + +0.7 1,132,911 + -1.5 1,132,911 + -0.0 1,133,180 + MPMX19_01098 0.17 -1.8 1,134,035 + -0.3 1,134,035 + -0.0 1,134,035 + -1.1
Or see this region's nucleotide sequence