Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00927

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00925 and MPMX19_00926 are separated by 100 nucleotidesMPMX19_00926 and MPMX19_00927 are separated by 3 nucleotidesMPMX19_00927 and MPMX19_00928 are separated by 107 nucleotidesMPMX19_00928 and MPMX19_00929 are separated by 147 nucleotides MPMX19_00925: MPMX19_00925 - hypothetical protein, at 964,539 to 964,907 _00925 MPMX19_00926: MPMX19_00926 - Inner membrane protein YbbJ, at 965,008 to 965,451 _00926 MPMX19_00927: MPMX19_00927 - Protein QmcA, at 965,455 to 966,411 _00927 MPMX19_00928: MPMX19_00928 - hypothetical protein, at 966,519 to 966,899 _00928 MPMX19_00929: MPMX19_00929 - Isocitrate dehydrogenase [NADP], at 967,047 to 968,270 _00929 Position (kb) 965 966 967Strain fitness (log2 ratio) -3 -2 -1 0 1at 964.921 kb on + strandat 964.921 kb on + strandat 964.921 kb on + strandat 964.921 kb on + strandat 964.921 kb on + strandat 964.921 kb on + strandat 964.921 kb on + strandat 964.922 kb on - strandat 964.922 kb on - strandat 964.922 kb on - strandat 964.922 kb on - strandat 965.009 kb on + strandat 965.009 kb on + strandat 965.009 kb on + strandat 965.009 kb on + strandat 965.009 kb on + strandat 965.052 kb on + strandat 965.053 kb on - strand, within MPMX19_00926at 965.053 kb on - strand, within MPMX19_00926at 965.663 kb on + strand, within MPMX19_00927at 965.663 kb on + strand, within MPMX19_00927at 965.663 kb on + strand, within MPMX19_00927at 965.663 kb on + strand, within MPMX19_00927at 965.663 kb on + strand, within MPMX19_00927at 965.663 kb on + strand, within MPMX19_00927at 965.663 kb on + strand, within MPMX19_00927at 965.663 kb on + strand, within MPMX19_00927at 965.663 kb on + strand, within MPMX19_00927at 965.663 kb on + strand, within MPMX19_00927at 965.663 kb on + strand, within MPMX19_00927at 965.663 kb on + strand, within MPMX19_00927at 965.663 kb on + strand, within MPMX19_00927at 965.663 kb on + strand, within MPMX19_00927at 965.664 kb on - strand, within MPMX19_00927at 965.664 kb on - strand, within MPMX19_00927at 965.664 kb on - strand, within MPMX19_00927at 965.664 kb on - strand, within MPMX19_00927at 965.664 kb on - strand, within MPMX19_00927at 965.664 kb on - strand, within MPMX19_00927at 965.664 kb on - strand, within MPMX19_00927at 965.664 kb on - strand, within MPMX19_00927at 965.664 kb on - strand, within MPMX19_00927at 965.664 kb on - strand, within MPMX19_00927at 965.664 kb on - strand, within MPMX19_00927at 965.664 kb on - strand, within MPMX19_00927at 965.664 kb on - strand, within MPMX19_00927at 965.664 kb on - strand, within MPMX19_00927at 965.664 kb on - strand, within MPMX19_00927at 965.664 kb on - strand, within MPMX19_00927at 965.664 kb on - strand, within MPMX19_00927at 965.664 kb on - strand, within MPMX19_00927at 965.681 kb on + strand, within MPMX19_00927at 965.681 kb on + strand, within MPMX19_00927at 965.681 kb on + strand, within MPMX19_00927at 965.681 kb on + strand, within MPMX19_00927at 965.682 kb on - strand, within MPMX19_00927at 965.682 kb on - strand, within MPMX19_00927at 965.682 kb on - strand, within MPMX19_00927at 965.682 kb on - strand, within MPMX19_00927at 966.110 kb on + strand, within MPMX19_00927at 966.110 kb on + strand, within MPMX19_00927at 966.110 kb on + strand, within MPMX19_00927at 966.110 kb on + strand, within MPMX19_00927at 966.110 kb on + strand, within MPMX19_00927at 966.110 kb on + strand, within MPMX19_00927at 966.110 kb on + strand, within MPMX19_00927at 966.110 kb on + strand, within MPMX19_00927at 966.110 kb on + strand, within MPMX19_00927at 966.110 kb on + strand, within MPMX19_00927at 966.110 kb on + strand, within MPMX19_00927at 966.110 kb on + strand, within MPMX19_00927at 966.111 kb on - strand, within MPMX19_00927at 966.111 kb on - strand, within MPMX19_00927at 966.111 kb on - strand, within MPMX19_00927at 966.111 kb on - strand, within MPMX19_00927at 966.111 kb on - strand, within MPMX19_00927at 966.111 kb on - strand, within MPMX19_00927at 966.111 kb on - strand, within MPMX19_00927at 966.111 kb on - strand, within MPMX19_00927at 966.111 kb on - strand, within MPMX19_00927at 966.111 kb on - strand, within MPMX19_00927at 966.143 kb on + strand, within MPMX19_00927at 966.143 kb on + strand, within MPMX19_00927at 966.143 kb on + strand, within MPMX19_00927at 966.143 kb on + strand, within MPMX19_00927at 966.143 kb on + strand, within MPMX19_00927at 966.143 kb on + strand, within MPMX19_00927at 966.143 kb on + strand, within MPMX19_00927at 966.143 kb on + strand, within MPMX19_00927at 966.143 kb on + strand, within MPMX19_00927at 966.143 kb on + strand, within MPMX19_00927at 966.143 kb on + strand, within MPMX19_00927at 966.143 kb on + strand, within MPMX19_00927at 966.143 kb on + strand, within MPMX19_00927at 966.143 kb on + strand, within MPMX19_00927at 966.143 kb on + strand, within MPMX19_00927at 966.143 kb on + strand, within MPMX19_00927at 966.144 kb on - strand, within MPMX19_00927at 966.144 kb on - strand, within MPMX19_00927at 966.144 kb on - strand, within MPMX19_00927at 966.144 kb on - strand, within MPMX19_00927at 966.144 kb on - strand, within MPMX19_00927at 966.144 kb on - strand, within MPMX19_00927at 966.144 kb on - strand, within MPMX19_00927at 966.144 kb on - strand, within MPMX19_00927at 966.144 kb on - strand, within MPMX19_00927at 966.144 kb on - strand, within MPMX19_00927at 966.144 kb on - strand, within MPMX19_00927at 966.297 kb on - strand, within MPMX19_00927at 966.523 kb on + strandat 966.523 kb on + strandat 966.523 kb on + strandat 966.523 kb on + strandat 966.523 kb on + strandat 966.524 kb on - strandat 966.524 kb on - strandat 966.524 kb on - strandat 966.524 kb on - strandat 966.524 kb on - strandat 966.524 kb on - strandat 966.524 kb on - strandat 966.966 kb on + strandat 966.967 kb on - strandat 966.967 kb on - strandat 967.049 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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964,921 + -0.4
964,921 + -0.9
964,921 + -1.6
964,921 + +0.1
964,921 + -1.0
964,921 + -0.6
964,921 + -1.0
964,922 - -0.6
964,922 - -0.3
964,922 - -0.6
964,922 - -1.0
965,009 + +1.4
965,009 + -0.6
965,009 + +1.2
965,009 + +1.6
965,009 + -1.2
965,052 + -0.1
965,053 - MPMX19_00926 0.10 -1.3
965,053 - MPMX19_00926 0.10 -1.5
965,663 + MPMX19_00927 0.22 -0.5
965,663 + MPMX19_00927 0.22 +0.1
965,663 + MPMX19_00927 0.22 -1.7
965,663 + MPMX19_00927 0.22 -2.2
965,663 + MPMX19_00927 0.22 +0.9
965,663 + MPMX19_00927 0.22 -0.1
965,663 + MPMX19_00927 0.22 +0.3
965,663 + MPMX19_00927 0.22 +0.7
965,663 + MPMX19_00927 0.22 -0.6
965,663 + MPMX19_00927 0.22 -1.2
965,663 + MPMX19_00927 0.22 -0.6
965,663 + MPMX19_00927 0.22 -0.3
965,663 + MPMX19_00927 0.22 -2.6
965,663 + MPMX19_00927 0.22 -0.6
965,664 - MPMX19_00927 0.22 +0.0
965,664 - MPMX19_00927 0.22 -0.4
965,664 - MPMX19_00927 0.22 +0.8
965,664 - MPMX19_00927 0.22 -1.5
965,664 - MPMX19_00927 0.22 -1.1
965,664 - MPMX19_00927 0.22 -1.3
965,664 - MPMX19_00927 0.22 -0.7
965,664 - MPMX19_00927 0.22 -1.2
965,664 - MPMX19_00927 0.22 +0.4
965,664 - MPMX19_00927 0.22 -1.5
965,664 - MPMX19_00927 0.22 -0.7
965,664 - MPMX19_00927 0.22 +0.4
965,664 - MPMX19_00927 0.22 -0.5
965,664 - MPMX19_00927 0.22 -1.1
965,664 - MPMX19_00927 0.22 -0.9
965,664 - MPMX19_00927 0.22 -0.2
965,664 - MPMX19_00927 0.22 -1.2
965,664 - MPMX19_00927 0.22 -0.1
965,681 + MPMX19_00927 0.24 +1.6
965,681 + MPMX19_00927 0.24 -1.6
965,681 + MPMX19_00927 0.24 -1.5
965,681 + MPMX19_00927 0.24 -0.7
965,682 - MPMX19_00927 0.24 -2.9
965,682 - MPMX19_00927 0.24 -1.9
965,682 - MPMX19_00927 0.24 +0.2
965,682 - MPMX19_00927 0.24 -0.6
966,110 + MPMX19_00927 0.68 -0.4
966,110 + MPMX19_00927 0.68 -1.5
966,110 + MPMX19_00927 0.68 -0.8
966,110 + MPMX19_00927 0.68 -0.3
966,110 + MPMX19_00927 0.68 +1.1
966,110 + MPMX19_00927 0.68 -1.7
966,110 + MPMX19_00927 0.68 -0.8
966,110 + MPMX19_00927 0.68 -1.9
966,110 + MPMX19_00927 0.68 -0.3
966,110 + MPMX19_00927 0.68 -1.1
966,110 + MPMX19_00927 0.68 -0.6
966,110 + MPMX19_00927 0.68 -0.5
966,111 - MPMX19_00927 0.69 -2.0
966,111 - MPMX19_00927 0.69 -0.7
966,111 - MPMX19_00927 0.69 -1.4
966,111 - MPMX19_00927 0.69 -1.3
966,111 - MPMX19_00927 0.69 -0.3
966,111 - MPMX19_00927 0.69 +0.2
966,111 - MPMX19_00927 0.69 +0.1
966,111 - MPMX19_00927 0.69 -0.3
966,111 - MPMX19_00927 0.69 -0.2
966,111 - MPMX19_00927 0.69 -0.1
966,143 + MPMX19_00927 0.72 -0.3
966,143 + MPMX19_00927 0.72 -0.7
966,143 + MPMX19_00927 0.72 -1.0
966,143 + MPMX19_00927 0.72 -0.3
966,143 + MPMX19_00927 0.72 +1.1
966,143 + MPMX19_00927 0.72 -0.8
966,143 + MPMX19_00927 0.72 -0.1
966,143 + MPMX19_00927 0.72 -0.2
966,143 + MPMX19_00927 0.72 -1.4
966,143 + MPMX19_00927 0.72 -0.3
966,143 + MPMX19_00927 0.72 -1.7
966,143 + MPMX19_00927 0.72 -1.7
966,143 + MPMX19_00927 0.72 -1.9
966,143 + MPMX19_00927 0.72 -0.3
966,143 + MPMX19_00927 0.72 -0.3
966,143 + MPMX19_00927 0.72 -0.8
966,144 - MPMX19_00927 0.72 -0.3
966,144 - MPMX19_00927 0.72 -0.9
966,144 - MPMX19_00927 0.72 -0.7
966,144 - MPMX19_00927 0.72 -0.6
966,144 - MPMX19_00927 0.72 -0.6
966,144 - MPMX19_00927 0.72 -1.5
966,144 - MPMX19_00927 0.72 -0.6
966,144 - MPMX19_00927 0.72 -1.2
966,144 - MPMX19_00927 0.72 -0.5
966,144 - MPMX19_00927 0.72 -1.2
966,144 - MPMX19_00927 0.72 -0.3
966,297 - MPMX19_00927 0.88 -0.3
966,523 + -0.7
966,523 + -0.3
966,523 + +0.0
966,523 + -1.3
966,523 + +0.3
966,524 - -1.0
966,524 - -0.4
966,524 - -1.3
966,524 - -1.5
966,524 - +0.3
966,524 - -1.0
966,524 - -1.2
966,966 + -0.2
966,967 - -0.7
966,967 - -0.6
967,049 - -1.5

Or see this region's nucleotide sequence