Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00888 and MPMX19_00889 are separated by 21 nucleotides MPMX19_00889 and MPMX19_00890 are separated by 72 nucleotides MPMX19_00890 and MPMX19_00891 overlap by 4 nucleotides MPMX19_00891 and MPMX19_00892 overlap by 23 nucleotides
MPMX19_00888: MPMX19_00888 - Cytochrome c oxidase assembly protein CtaG, at 922,589 to 923,230
_00888
MPMX19_00889: MPMX19_00889 - Cytochrome c oxidase subunit 3, at 923,252 to 924,127
_00889
MPMX19_00890: MPMX19_00890 - hypothetical protein, at 924,200 to 924,571
_00890
MPMX19_00891: MPMX19_00891 - hypothetical protein, at 924,568 to 925,380
_00891
MPMX19_00892: MPMX19_00892 - Thermostable carboxypeptidase 1, at 925,358 to 926,845
_00892
Position (kb) 924
925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 923.235 kb on + strand at 923.235 kb on + strand at 923.235 kb on + strand at 923.235 kb on + strand at 923.235 kb on + strand at 923.236 kb on - strand at 923.242 kb on + strand at 923.243 kb on - strand at 923.243 kb on - strand at 923.300 kb on + strand at 923.300 kb on + strand at 923.300 kb on + strand at 923.300 kb on + strand at 923.301 kb on - strand at 923.301 kb on - strand at 923.301 kb on - strand at 923.330 kb on + strand at 923.330 kb on + strand at 923.330 kb on + strand at 923.331 kb on - strand at 923.331 kb on - strand at 923.331 kb on - strand at 923.331 kb on - strand at 923.550 kb on - strand, within MPMX19_00889 at 923.852 kb on + strand, within MPMX19_00889 at 923.852 kb on + strand, within MPMX19_00889 at 923.852 kb on + strand, within MPMX19_00889 at 923.853 kb on - strand, within MPMX19_00889 at 923.853 kb on - strand, within MPMX19_00889 at 923.853 kb on - strand, within MPMX19_00889 at 923.853 kb on - strand, within MPMX19_00889 at 923.853 kb on - strand, within MPMX19_00889 at 923.853 kb on - strand, within MPMX19_00889 at 923.853 kb on - strand, within MPMX19_00889 at 923.858 kb on + strand, within MPMX19_00889 at 923.858 kb on + strand, within MPMX19_00889 at 923.858 kb on + strand, within MPMX19_00889 at 923.858 kb on + strand, within MPMX19_00889 at 923.858 kb on + strand, within MPMX19_00889 at 923.858 kb on + strand, within MPMX19_00889 at 923.858 kb on + strand, within MPMX19_00889 at 923.858 kb on + strand, within MPMX19_00889 at 923.858 kb on + strand, within MPMX19_00889 at 923.858 kb on + strand, within MPMX19_00889 at 923.858 kb on + strand, within MPMX19_00889 at 923.858 kb on + strand, within MPMX19_00889 at 923.858 kb on + strand, within MPMX19_00889 at 923.858 kb on + strand, within MPMX19_00889 at 923.859 kb on - strand, within MPMX19_00889 at 923.859 kb on - strand, within MPMX19_00889 at 923.859 kb on - strand, within MPMX19_00889 at 923.859 kb on - strand, within MPMX19_00889 at 923.859 kb on - strand, within MPMX19_00889 at 923.859 kb on - strand, within MPMX19_00889 at 923.859 kb on - strand, within MPMX19_00889 at 923.859 kb on - strand, within MPMX19_00889 at 923.909 kb on + strand, within MPMX19_00889 at 923.909 kb on + strand, within MPMX19_00889 at 923.909 kb on + strand, within MPMX19_00889 at 923.910 kb on - strand, within MPMX19_00889 at 923.910 kb on - strand, within MPMX19_00889 at 923.910 kb on - strand, within MPMX19_00889 at 923.910 kb on - strand, within MPMX19_00889 at 923.910 kb on - strand, within MPMX19_00889 at 923.910 kb on - strand, within MPMX19_00889 at 923.910 kb on - strand, within MPMX19_00889 at 923.910 kb on - strand, within MPMX19_00889 at 923.910 kb on - strand, within MPMX19_00889 at 923.910 kb on - strand, within MPMX19_00889 at 923.910 kb on - strand, within MPMX19_00889 at 923.910 kb on - strand, within MPMX19_00889 at 924.038 kb on + strand, within MPMX19_00889 at 924.038 kb on + strand, within MPMX19_00889 at 924.039 kb on - strand, within MPMX19_00889 at 924.086 kb on + strand at 924.086 kb on + strand at 924.087 kb on - strand at 924.087 kb on - strand at 924.087 kb on - strand at 924.163 kb on + strand at 924.163 kb on + strand at 924.163 kb on + strand at 924.163 kb on + strand at 924.164 kb on - strand at 924.164 kb on - strand at 924.212 kb on + strand at 924.213 kb on - strand at 924.213 kb on - strand at 924.281 kb on + strand, within MPMX19_00890 at 924.281 kb on + strand, within MPMX19_00890 at 924.281 kb on + strand, within MPMX19_00890 at 924.281 kb on + strand, within MPMX19_00890 at 924.281 kb on + strand, within MPMX19_00890 at 924.282 kb on - strand, within MPMX19_00890 at 924.282 kb on - strand, within MPMX19_00890 at 924.282 kb on - strand, within MPMX19_00890 at 924.291 kb on - strand, within MPMX19_00890 at 924.534 kb on - strand at 924.534 kb on - strand at 924.828 kb on + strand, within MPMX19_00891 at 924.874 kb on + strand, within MPMX19_00891 at 924.874 kb on + strand, within MPMX19_00891 at 924.875 kb on - strand, within MPMX19_00891 at 925.124 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.261 kb on + strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.262 kb on - strand, within MPMX19_00891 at 925.277 kb on - strand, within MPMX19_00891 at 925.306 kb on + strand at 925.306 kb on + strand at 925.306 kb on + strand at 925.306 kb on + strand at 925.306 kb on + strand at 925.307 kb on - strand at 925.307 kb on - strand at 925.307 kb on - strand at 925.367 kb on + strand at 925.367 kb on + strand at 925.367 kb on + strand at 925.367 kb on + strand at 925.367 kb on + strand at 925.367 kb on + strand at 925.367 kb on + strand at 925.367 kb on + strand at 925.368 kb on - strand at 925.368 kb on - strand at 925.368 kb on - strand at 925.368 kb on - strand at 925.368 kb on - strand at 925.368 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 923,235 + +0.5 923,235 + -1.0 923,235 + +0.2 923,235 + -0.8 923,235 + -2.1 923,236 - +0.6 923,242 + -0.6 923,243 - -1.8 923,243 - +0.1 923,300 + +0.6 923,300 + -1.5 923,300 + -0.3 923,300 + +0.1 923,301 - -1.2 923,301 - -0.1 923,301 - -1.4 923,330 + -1.8 923,330 + +0.8 923,330 + -1.2 923,331 - -0.4 923,331 - -1.0 923,331 - +1.2 923,331 - -0.3 923,550 - MPMX19_00889 0.34 -0.8 923,852 + MPMX19_00889 0.68 -0.0 923,852 + MPMX19_00889 0.68 -0.6 923,852 + MPMX19_00889 0.68 -1.7 923,853 - MPMX19_00889 0.69 +0.2 923,853 - MPMX19_00889 0.69 -0.8 923,853 - MPMX19_00889 0.69 -0.5 923,853 - MPMX19_00889 0.69 +1.0 923,853 - MPMX19_00889 0.69 +0.2 923,853 - MPMX19_00889 0.69 -1.2 923,853 - MPMX19_00889 0.69 -0.5 923,858 + MPMX19_00889 0.69 +0.7 923,858 + MPMX19_00889 0.69 -0.3 923,858 + MPMX19_00889 0.69 -0.0 923,858 + MPMX19_00889 0.69 +0.7 923,858 + MPMX19_00889 0.69 +0.5 923,858 + MPMX19_00889 0.69 +0.2 923,858 + MPMX19_00889 0.69 -0.1 923,858 + MPMX19_00889 0.69 -0.7 923,858 + MPMX19_00889 0.69 -0.7 923,858 + MPMX19_00889 0.69 -1.3 923,858 + MPMX19_00889 0.69 -0.1 923,858 + MPMX19_00889 0.69 +0.4 923,858 + MPMX19_00889 0.69 -0.1 923,858 + MPMX19_00889 0.69 -1.1 923,859 - MPMX19_00889 0.69 -0.0 923,859 - MPMX19_00889 0.69 -0.5 923,859 - MPMX19_00889 0.69 -0.3 923,859 - MPMX19_00889 0.69 -0.8 923,859 - MPMX19_00889 0.69 -0.4 923,859 - MPMX19_00889 0.69 +1.6 923,859 - MPMX19_00889 0.69 -0.5 923,859 - MPMX19_00889 0.69 -1.6 923,909 + MPMX19_00889 0.75 -1.5 923,909 + MPMX19_00889 0.75 -1.8 923,909 + MPMX19_00889 0.75 +0.8 923,910 - MPMX19_00889 0.75 -1.0 923,910 - MPMX19_00889 0.75 -0.3 923,910 - MPMX19_00889 0.75 -0.7 923,910 - MPMX19_00889 0.75 -0.0 923,910 - MPMX19_00889 0.75 +0.6 923,910 - MPMX19_00889 0.75 -0.3 923,910 - MPMX19_00889 0.75 -0.8 923,910 - MPMX19_00889 0.75 -2.5 923,910 - MPMX19_00889 0.75 -1.0 923,910 - MPMX19_00889 0.75 -2.0 923,910 - MPMX19_00889 0.75 -1.2 923,910 - MPMX19_00889 0.75 -0.4 924,038 + MPMX19_00889 0.90 -0.2 924,038 + MPMX19_00889 0.90 +1.1 924,039 - MPMX19_00889 0.90 -1.3 924,086 + +0.7 924,086 + -1.1 924,087 - +0.4 924,087 - +1.7 924,087 - -0.3 924,163 + -2.9 924,163 + -0.7 924,163 + -0.7 924,163 + -1.0 924,164 - +0.3 924,164 - +0.4 924,212 + -0.5 924,213 - -1.8 924,213 - +1.2 924,281 + MPMX19_00890 0.22 +2.4 924,281 + MPMX19_00890 0.22 -1.2 924,281 + MPMX19_00890 0.22 -0.6 924,281 + MPMX19_00890 0.22 -0.5 924,281 + MPMX19_00890 0.22 -0.1 924,282 - MPMX19_00890 0.22 -0.5 924,282 - MPMX19_00890 0.22 -0.4 924,282 - MPMX19_00890 0.22 -1.8 924,291 - MPMX19_00890 0.24 -0.6 924,534 - -0.5 924,534 - +0.7 924,828 + MPMX19_00891 0.32 -0.2 924,874 + MPMX19_00891 0.38 -1.0 924,874 + MPMX19_00891 0.38 -1.6 924,875 - MPMX19_00891 0.38 -0.6 925,124 + MPMX19_00891 0.68 -0.6 925,261 + MPMX19_00891 0.85 -1.1 925,261 + MPMX19_00891 0.85 -0.3 925,261 + MPMX19_00891 0.85 +0.3 925,261 + MPMX19_00891 0.85 +0.2 925,261 + MPMX19_00891 0.85 +1.0 925,261 + MPMX19_00891 0.85 +0.4 925,261 + MPMX19_00891 0.85 -0.9 925,261 + MPMX19_00891 0.85 -2.6 925,261 + MPMX19_00891 0.85 -1.9 925,261 + MPMX19_00891 0.85 -1.0 925,261 + MPMX19_00891 0.85 -0.0 925,262 - MPMX19_00891 0.85 -1.0 925,262 - MPMX19_00891 0.85 +0.3 925,262 - MPMX19_00891 0.85 +0.3 925,262 - MPMX19_00891 0.85 -1.1 925,262 - MPMX19_00891 0.85 -0.9 925,262 - MPMX19_00891 0.85 -0.3 925,262 - MPMX19_00891 0.85 -0.1 925,262 - MPMX19_00891 0.85 -0.5 925,262 - MPMX19_00891 0.85 -1.6 925,262 - MPMX19_00891 0.85 +0.1 925,262 - MPMX19_00891 0.85 -0.5 925,277 - MPMX19_00891 0.87 -0.5 925,306 + -0.4 925,306 + +0.1 925,306 + -0.9 925,306 + -1.3 925,306 + +0.9 925,307 - +0.3 925,307 - -1.2 925,307 - +0.6 925,367 + -0.5 925,367 + +0.3 925,367 + -1.5 925,367 + -1.8 925,367 + -0.3 925,367 + +0.6 925,367 + -1.0 925,367 + -1.4 925,368 - +1.3 925,368 - -0.3 925,368 - +1.2 925,368 - -0.7 925,368 - -0.0 925,368 - -0.9
Or see this region's nucleotide sequence