Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00888

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00886 and MPMX19_00887 overlap by 4 nucleotidesMPMX19_00887 and MPMX19_00888 are separated by 1 nucleotidesMPMX19_00888 and MPMX19_00889 are separated by 21 nucleotidesMPMX19_00889 and MPMX19_00890 are separated by 72 nucleotides MPMX19_00886: MPMX19_00886 - Protoheme IX farnesyltransferase, at 921,494 to 922,405 _00886 MPMX19_00887: MPMX19_00887 - hypothetical protein, at 922,402 to 922,587 _00887 MPMX19_00888: MPMX19_00888 - Cytochrome c oxidase assembly protein CtaG, at 922,589 to 923,230 _00888 MPMX19_00889: MPMX19_00889 - Cytochrome c oxidase subunit 3, at 923,252 to 924,127 _00889 MPMX19_00890: MPMX19_00890 - hypothetical protein, at 924,200 to 924,571 _00890 Position (kb) 922 923 924Strain fitness (log2 ratio) -3 -2 -1 0 1at 922.384 kb on + strandat 922.384 kb on + strandat 922.384 kb on + strandat 922.549 kb on + strand, within MPMX19_00887at 922.549 kb on + strand, within MPMX19_00887at 922.549 kb on + strand, within MPMX19_00887at 922.549 kb on + strand, within MPMX19_00887at 922.549 kb on + strand, within MPMX19_00887at 922.550 kb on - strand, within MPMX19_00887at 922.550 kb on - strand, within MPMX19_00887at 922.586 kb on + strandat 922.588 kb on + strandat 922.588 kb on + strandat 922.588 kb on + strandat 922.588 kb on + strandat 922.589 kb on - strandat 922.589 kb on - strandat 922.589 kb on - strandat 922.589 kb on - strandat 922.589 kb on - strandat 922.676 kb on + strand, within MPMX19_00888at 922.676 kb on + strand, within MPMX19_00888at 922.676 kb on + strand, within MPMX19_00888at 922.676 kb on + strand, within MPMX19_00888at 922.676 kb on + strand, within MPMX19_00888at 922.676 kb on + strand, within MPMX19_00888at 922.677 kb on - strand, within MPMX19_00888at 922.677 kb on - strand, within MPMX19_00888at 922.677 kb on - strand, within MPMX19_00888at 922.694 kb on + strand, within MPMX19_00888at 922.694 kb on + strand, within MPMX19_00888at 922.695 kb on - strand, within MPMX19_00888at 922.695 kb on - strand, within MPMX19_00888at 922.883 kb on + strand, within MPMX19_00888at 922.931 kb on + strand, within MPMX19_00888at 922.931 kb on + strand, within MPMX19_00888at 922.932 kb on - strand, within MPMX19_00888at 922.932 kb on - strand, within MPMX19_00888at 922.961 kb on + strand, within MPMX19_00888at 922.961 kb on + strand, within MPMX19_00888at 922.961 kb on + strand, within MPMX19_00888at 922.961 kb on + strand, within MPMX19_00888at 922.961 kb on + strand, within MPMX19_00888at 922.962 kb on - strand, within MPMX19_00888at 922.962 kb on - strand, within MPMX19_00888at 922.962 kb on - strand, within MPMX19_00888at 922.962 kb on - strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.105 kb on + strand, within MPMX19_00888at 923.106 kb on - strand, within MPMX19_00888at 923.106 kb on - strand, within MPMX19_00888at 923.106 kb on - strand, within MPMX19_00888at 923.106 kb on - strand, within MPMX19_00888at 923.106 kb on - strand, within MPMX19_00888at 923.106 kb on - strand, within MPMX19_00888at 923.106 kb on - strand, within MPMX19_00888at 923.235 kb on + strandat 923.235 kb on + strandat 923.235 kb on + strandat 923.235 kb on + strandat 923.235 kb on + strandat 923.236 kb on - strandat 923.242 kb on + strandat 923.243 kb on - strandat 923.243 kb on - strandat 923.300 kb on + strandat 923.300 kb on + strandat 923.300 kb on + strandat 923.300 kb on + strandat 923.301 kb on - strandat 923.301 kb on - strandat 923.301 kb on - strandat 923.330 kb on + strandat 923.330 kb on + strandat 923.330 kb on + strandat 923.331 kb on - strandat 923.331 kb on - strandat 923.331 kb on - strandat 923.331 kb on - strandat 923.550 kb on - strand, within MPMX19_00889at 923.852 kb on + strand, within MPMX19_00889at 923.852 kb on + strand, within MPMX19_00889at 923.852 kb on + strand, within MPMX19_00889at 923.853 kb on - strand, within MPMX19_00889at 923.853 kb on - strand, within MPMX19_00889at 923.853 kb on - strand, within MPMX19_00889at 923.853 kb on - strand, within MPMX19_00889at 923.853 kb on - strand, within MPMX19_00889at 923.853 kb on - strand, within MPMX19_00889at 923.853 kb on - strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.858 kb on + strand, within MPMX19_00889at 923.859 kb on - strand, within MPMX19_00889at 923.859 kb on - strand, within MPMX19_00889at 923.859 kb on - strand, within MPMX19_00889at 923.859 kb on - strand, within MPMX19_00889at 923.859 kb on - strand, within MPMX19_00889at 923.859 kb on - strand, within MPMX19_00889at 923.859 kb on - strand, within MPMX19_00889at 923.859 kb on - strand, within MPMX19_00889at 923.909 kb on + strand, within MPMX19_00889at 923.909 kb on + strand, within MPMX19_00889at 923.909 kb on + strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 923.910 kb on - strand, within MPMX19_00889at 924.038 kb on + strand, within MPMX19_00889at 924.038 kb on + strand, within MPMX19_00889at 924.039 kb on - strand, within MPMX19_00889at 924.086 kb on + strandat 924.086 kb on + strandat 924.087 kb on - strandat 924.087 kb on - strandat 924.087 kb on - strandat 924.163 kb on + strandat 924.163 kb on + strandat 924.163 kb on + strandat 924.163 kb on + strandat 924.164 kb on - strandat 924.164 kb on - strandat 924.212 kb on + strandat 924.213 kb on - strandat 924.213 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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922,384 + -1.3
922,384 + -1.3
922,384 + -1.2
922,549 + MPMX19_00887 0.79 -0.9
922,549 + MPMX19_00887 0.79 -0.6
922,549 + MPMX19_00887 0.79 -0.5
922,549 + MPMX19_00887 0.79 +1.5
922,549 + MPMX19_00887 0.79 -0.7
922,550 - MPMX19_00887 0.80 -0.3
922,550 - MPMX19_00887 0.80 -1.3
922,586 + -0.3
922,588 + -0.4
922,588 + -0.3
922,588 + -0.8
922,588 + -1.5
922,589 - -0.8
922,589 - +0.2
922,589 - -0.7
922,589 - +0.9
922,589 - -1.5
922,676 + MPMX19_00888 0.14 -0.7
922,676 + MPMX19_00888 0.14 +1.3
922,676 + MPMX19_00888 0.14 -0.1
922,676 + MPMX19_00888 0.14 +1.4
922,676 + MPMX19_00888 0.14 +1.0
922,676 + MPMX19_00888 0.14 -1.2
922,677 - MPMX19_00888 0.14 -1.1
922,677 - MPMX19_00888 0.14 +0.2
922,677 - MPMX19_00888 0.14 -0.3
922,694 + MPMX19_00888 0.16 +1.3
922,694 + MPMX19_00888 0.16 +1.0
922,695 - MPMX19_00888 0.17 +1.0
922,695 - MPMX19_00888 0.17 +0.1
922,883 + MPMX19_00888 0.46 -0.6
922,931 + MPMX19_00888 0.53 -1.7
922,931 + MPMX19_00888 0.53 +1.5
922,932 - MPMX19_00888 0.53 +1.0
922,932 - MPMX19_00888 0.53 +1.0
922,961 + MPMX19_00888 0.58 +0.3
922,961 + MPMX19_00888 0.58 -1.0
922,961 + MPMX19_00888 0.58 -0.3
922,961 + MPMX19_00888 0.58 -0.4
922,961 + MPMX19_00888 0.58 -1.0
922,962 - MPMX19_00888 0.58 +0.9
922,962 - MPMX19_00888 0.58 -1.0
922,962 - MPMX19_00888 0.58 -1.2
922,962 - MPMX19_00888 0.58 +0.5
923,105 + MPMX19_00888 0.80 -1.1
923,105 + MPMX19_00888 0.80 -0.3
923,105 + MPMX19_00888 0.80 -1.5
923,105 + MPMX19_00888 0.80 +0.0
923,105 + MPMX19_00888 0.80 +0.0
923,105 + MPMX19_00888 0.80 -0.1
923,105 + MPMX19_00888 0.80 +0.0
923,105 + MPMX19_00888 0.80 -0.5
923,105 + MPMX19_00888 0.80 -1.5
923,105 + MPMX19_00888 0.80 -0.2
923,105 + MPMX19_00888 0.80 -1.0
923,105 + MPMX19_00888 0.80 +1.0
923,106 - MPMX19_00888 0.81 +0.7
923,106 - MPMX19_00888 0.81 -1.1
923,106 - MPMX19_00888 0.81 +0.0
923,106 - MPMX19_00888 0.81 +0.0
923,106 - MPMX19_00888 0.81 +1.0
923,106 - MPMX19_00888 0.81 -2.8
923,106 - MPMX19_00888 0.81 -1.3
923,235 + +0.5
923,235 + -1.0
923,235 + +0.2
923,235 + -0.8
923,235 + -2.1
923,236 - +0.6
923,242 + -0.6
923,243 - -1.8
923,243 - +0.1
923,300 + +0.6
923,300 + -1.5
923,300 + -0.3
923,300 + +0.1
923,301 - -1.2
923,301 - -0.1
923,301 - -1.4
923,330 + -1.8
923,330 + +0.8
923,330 + -1.2
923,331 - -0.4
923,331 - -1.0
923,331 - +1.2
923,331 - -0.3
923,550 - MPMX19_00889 0.34 -0.8
923,852 + MPMX19_00889 0.68 -0.0
923,852 + MPMX19_00889 0.68 -0.6
923,852 + MPMX19_00889 0.68 -1.7
923,853 - MPMX19_00889 0.69 +0.2
923,853 - MPMX19_00889 0.69 -0.8
923,853 - MPMX19_00889 0.69 -0.5
923,853 - MPMX19_00889 0.69 +1.0
923,853 - MPMX19_00889 0.69 +0.2
923,853 - MPMX19_00889 0.69 -1.2
923,853 - MPMX19_00889 0.69 -0.5
923,858 + MPMX19_00889 0.69 +0.7
923,858 + MPMX19_00889 0.69 -0.3
923,858 + MPMX19_00889 0.69 -0.0
923,858 + MPMX19_00889 0.69 +0.7
923,858 + MPMX19_00889 0.69 +0.5
923,858 + MPMX19_00889 0.69 +0.2
923,858 + MPMX19_00889 0.69 -0.1
923,858 + MPMX19_00889 0.69 -0.7
923,858 + MPMX19_00889 0.69 -0.7
923,858 + MPMX19_00889 0.69 -1.3
923,858 + MPMX19_00889 0.69 -0.1
923,858 + MPMX19_00889 0.69 +0.4
923,858 + MPMX19_00889 0.69 -0.1
923,858 + MPMX19_00889 0.69 -1.1
923,859 - MPMX19_00889 0.69 -0.0
923,859 - MPMX19_00889 0.69 -0.5
923,859 - MPMX19_00889 0.69 -0.3
923,859 - MPMX19_00889 0.69 -0.8
923,859 - MPMX19_00889 0.69 -0.4
923,859 - MPMX19_00889 0.69 +1.6
923,859 - MPMX19_00889 0.69 -0.5
923,859 - MPMX19_00889 0.69 -1.6
923,909 + MPMX19_00889 0.75 -1.5
923,909 + MPMX19_00889 0.75 -1.8
923,909 + MPMX19_00889 0.75 +0.8
923,910 - MPMX19_00889 0.75 -1.0
923,910 - MPMX19_00889 0.75 -0.3
923,910 - MPMX19_00889 0.75 -0.7
923,910 - MPMX19_00889 0.75 -0.0
923,910 - MPMX19_00889 0.75 +0.6
923,910 - MPMX19_00889 0.75 -0.3
923,910 - MPMX19_00889 0.75 -0.8
923,910 - MPMX19_00889 0.75 -2.5
923,910 - MPMX19_00889 0.75 -1.0
923,910 - MPMX19_00889 0.75 -2.0
923,910 - MPMX19_00889 0.75 -1.2
923,910 - MPMX19_00889 0.75 -0.4
924,038 + MPMX19_00889 0.90 -0.2
924,038 + MPMX19_00889 0.90 +1.1
924,039 - MPMX19_00889 0.90 -1.3
924,086 + +0.7
924,086 + -1.1
924,087 - +0.4
924,087 - +1.7
924,087 - -0.3
924,163 + -2.9
924,163 + -0.7
924,163 + -0.7
924,163 + -1.0
924,164 - +0.3
924,164 - +0.4
924,212 + -0.5
924,213 - -1.8
924,213 - +1.2

Or see this region's nucleotide sequence