Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00844 and MPMX19_00845 are separated by 93 nucleotides MPMX19_00845 and MPMX19_00846 are separated by 510 nucleotides MPMX19_00846 and MPMX19_00847 are separated by 166 nucleotides
MPMX19_00844: MPMX19_00844 - GTPase Era, at 875,547 to 876,731
_00844
MPMX19_00845: MPMX19_00845 - hypothetical protein, at 876,825 to 877,130
_00845
MPMX19_00846: MPMX19_00846 - hypothetical protein, at 877,641 to 877,934
_00846
MPMX19_00847: MPMX19_00847 - Ribosomal RNA large subunit methyltransferase M, at 878,101 to 879,126
_00847
Position (kb) 877
878 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 876.696 kb on + strand at 876.697 kb on - strand at 876.697 kb on - strand at 876.938 kb on + strand, within MPMX19_00845 at 876.939 kb on - strand, within MPMX19_00845 at 876.939 kb on - strand, within MPMX19_00845 at 877.203 kb on + strand at 877.204 kb on - strand at 877.204 kb on - strand at 877.204 kb on - strand at 877.204 kb on - strand at 877.306 kb on + strand at 877.306 kb on + strand at 877.306 kb on + strand at 877.307 kb on - strand at 877.307 kb on - strand at 877.440 kb on + strand at 877.440 kb on + strand at 877.440 kb on + strand at 877.441 kb on - strand at 877.441 kb on - strand at 877.527 kb on - strand at 877.527 kb on - strand at 877.566 kb on + strand at 877.566 kb on + strand at 877.567 kb on - strand at 877.567 kb on - strand at 877.567 kb on - strand at 877.576 kb on - strand at 877.599 kb on + strand at 877.600 kb on - strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.660 kb on + strand at 877.660 kb on + strand at 877.661 kb on - strand at 877.661 kb on - strand at 877.661 kb on - strand at 877.901 kb on + strand, within MPMX19_00846 at 877.901 kb on + strand, within MPMX19_00846 at 877.901 kb on + strand, within MPMX19_00846 at 877.902 kb on - strand, within MPMX19_00846 at 877.902 kb on - strand, within MPMX19_00846 at 877.902 kb on - strand, within MPMX19_00846 at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.984 kb on + strand at 877.984 kb on + strand at 877.985 kb on - strand at 877.985 kb on - strand at 877.985 kb on - strand at 877.985 kb on - strand at 878.034 kb on + strand at 878.034 kb on + strand at 878.035 kb on - strand at 878.035 kb on - strand at 878.036 kb on + strand at 878.036 kb on + strand at 878.036 kb on + strand at 878.036 kb on + strand at 878.036 kb on + strand at 878.036 kb on + strand at 878.036 kb on + strand at 878.036 kb on + strand at 878.036 kb on + strand at 878.037 kb on - strand at 878.037 kb on - strand at 878.037 kb on - strand at 878.037 kb on - strand at 878.037 kb on - strand at 878.037 kb on - strand at 878.037 kb on - strand at 878.037 kb on - strand at 878.037 kb on - strand at 878.130 kb on + strand at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.368 kb on + strand, within MPMX19_00847 at 878.368 kb on + strand, within MPMX19_00847 at 878.368 kb on + strand, within MPMX19_00847 at 878.369 kb on - strand, within MPMX19_00847 at 878.369 kb on - strand, within MPMX19_00847 at 878.369 kb on - strand, within MPMX19_00847 at 878.369 kb on - strand, within MPMX19_00847 at 878.369 kb on - strand, within MPMX19_00847 at 878.671 kb on + strand, within MPMX19_00847 at 878.672 kb on - strand, within MPMX19_00847 at 878.672 kb on - strand, within MPMX19_00847 at 878.672 kb on - strand, within MPMX19_00847
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 876,696 + -1.0 876,697 - -0.6 876,697 - +0.0 876,938 + MPMX19_00845 0.37 -0.7 876,939 - MPMX19_00845 0.37 -0.3 876,939 - MPMX19_00845 0.37 +1.2 877,203 + -1.9 877,204 - -0.8 877,204 - -0.7 877,204 - +0.8 877,204 - +0.0 877,306 + +0.2 877,306 + -1.0 877,306 + +0.3 877,307 - +0.4 877,307 - -0.3 877,440 + -0.3 877,440 + +0.0 877,440 + -1.3 877,441 - +0.2 877,441 - +0.8 877,527 - -0.0 877,527 - -1.3 877,566 + -0.9 877,566 + -0.6 877,567 - -2.9 877,567 - -1.0 877,567 - -0.9 877,576 - -0.5 877,599 + +1.3 877,600 - +0.7 877,622 + -1.5 877,622 + +0.1 877,622 + -0.3 877,622 + -1.2 877,622 + -1.7 877,622 + -1.3 877,622 + +0.0 877,623 - -0.4 877,623 - -1.6 877,623 - +0.4 877,623 - +0.0 877,660 + -1.2 877,660 + -0.9 877,661 - +0.3 877,661 - -1.3 877,661 - -1.3 877,901 + MPMX19_00846 0.88 -1.9 877,901 + MPMX19_00846 0.88 -1.5 877,901 + MPMX19_00846 0.88 -0.6 877,902 - MPMX19_00846 0.89 -1.5 877,902 - MPMX19_00846 0.89 -2.0 877,902 - MPMX19_00846 0.89 +1.0 877,930 + -0.7 877,930 + +0.0 877,930 + -0.4 877,930 + +0.8 877,930 + -0.3 877,930 + -0.8 877,930 + -1.2 877,930 + +0.4 877,930 + -0.5 877,930 + -0.6 877,930 + -1.3 877,930 + -0.5 877,930 + +0.5 877,930 + -1.3 877,930 + +0.4 877,930 + -1.2 877,930 + -0.8 877,930 + -0.6 877,930 + -1.3 877,930 + -1.0 877,930 + -1.2 877,930 + -1.0 877,930 + +0.8 877,930 + -1.7 877,930 + -1.4 877,931 - -1.2 877,931 - -0.6 877,931 - -0.1 877,931 - -0.6 877,931 - +0.0 877,931 - +0.6 877,931 - +0.0 877,931 - +0.2 877,931 - +2.3 877,931 - -1.2 877,931 - -0.8 877,931 - -1.3 877,931 - +0.4 877,931 - -0.7 877,931 - -0.6 877,931 - -0.2 877,931 - -1.0 877,931 - +0.0 877,931 - +0.2 877,931 - +0.2 877,931 - -1.6 877,931 - +0.8 877,931 - -0.6 877,931 - -0.8 877,931 - -0.9 877,931 - -1.6 877,931 - -1.2 877,931 - +1.0 877,931 - +0.6 877,931 - -1.5 877,934 + +0.1 877,934 + -0.9 877,934 + -1.2 877,934 + +0.8 877,934 + -0.1 877,934 + -1.8 877,934 + -0.5 877,934 + -0.7 877,934 + -0.3 877,934 + -1.0 877,934 + +0.7 877,934 + +0.8 877,934 + +0.2 877,934 + -1.2 877,934 + +0.0 877,934 + +0.2 877,934 + -0.5 877,934 + +0.1 877,934 + -0.9 877,934 + -0.6 877,934 + -0.9 877,934 + -1.0 877,934 + -1.7 877,934 + -0.3 877,934 + -0.2 877,935 - -1.5 877,935 - -0.9 877,935 - -0.8 877,935 - +0.0 877,935 - +0.4 877,935 - +0.8 877,935 - -0.7 877,935 - -1.1 877,935 - -1.3 877,935 - -2.9 877,935 - -0.8 877,935 - +1.0 877,935 - +0.0 877,935 - +0.6 877,984 + +0.5 877,984 + +0.0 877,985 - -0.8 877,985 - -0.7 877,985 - -0.2 877,985 - -0.2 878,034 + +0.3 878,034 + +0.2 878,035 - -1.6 878,035 - +0.0 878,036 + -1.2 878,036 + +0.4 878,036 + -1.4 878,036 + -1.3 878,036 + -0.7 878,036 + +0.7 878,036 + -1.7 878,036 + -1.5 878,036 + +1.2 878,037 - -0.3 878,037 - -0.9 878,037 - +0.2 878,037 - +0.4 878,037 - -1.8 878,037 - -0.7 878,037 - -0.5 878,037 - +0.2 878,037 - +0.6 878,130 + -0.6 878,242 + MPMX19_00847 0.14 -0.3 878,242 + MPMX19_00847 0.14 -0.3 878,242 + MPMX19_00847 0.14 -0.6 878,242 + MPMX19_00847 0.14 -0.2 878,242 + MPMX19_00847 0.14 -1.6 878,242 + MPMX19_00847 0.14 -1.9 878,242 + MPMX19_00847 0.14 -0.3 878,242 + MPMX19_00847 0.14 +0.4 878,242 + MPMX19_00847 0.14 -1.8 878,242 + MPMX19_00847 0.14 -0.1 878,242 + MPMX19_00847 0.14 -0.2 878,242 + MPMX19_00847 0.14 -0.2 878,242 + MPMX19_00847 0.14 +0.3 878,243 - MPMX19_00847 0.14 -1.0 878,243 - MPMX19_00847 0.14 -0.3 878,243 - MPMX19_00847 0.14 -1.3 878,243 - MPMX19_00847 0.14 -0.8 878,243 - MPMX19_00847 0.14 +1.6 878,243 - MPMX19_00847 0.14 +0.0 878,243 - MPMX19_00847 0.14 +0.1 878,243 - MPMX19_00847 0.14 -2.4 878,243 - MPMX19_00847 0.14 +0.1 878,243 - MPMX19_00847 0.14 -0.8 878,243 - MPMX19_00847 0.14 +1.4 878,243 - MPMX19_00847 0.14 +0.4 878,243 - MPMX19_00847 0.14 +0.2 878,243 - MPMX19_00847 0.14 -0.6 878,243 - MPMX19_00847 0.14 +0.2 878,243 - MPMX19_00847 0.14 -0.9 878,243 - MPMX19_00847 0.14 -1.0 878,243 - MPMX19_00847 0.14 +0.7 878,243 - MPMX19_00847 0.14 -1.5 878,243 - MPMX19_00847 0.14 -0.6 878,368 + MPMX19_00847 0.26 -0.2 878,368 + MPMX19_00847 0.26 -1.7 878,368 + MPMX19_00847 0.26 +2.0 878,369 - MPMX19_00847 0.26 -0.3 878,369 - MPMX19_00847 0.26 -0.9 878,369 - MPMX19_00847 0.26 -0.3 878,369 - MPMX19_00847 0.26 -0.8 878,369 - MPMX19_00847 0.26 -0.6 878,671 + MPMX19_00847 0.56 +0.7 878,672 - MPMX19_00847 0.56 -0.6 878,672 - MPMX19_00847 0.56 +0.3 878,672 - MPMX19_00847 0.56 -1.0
Or see this region's nucleotide sequence