Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00838 and MPMX19_00839 are separated by 183 nucleotides MPMX19_00839 and MPMX19_00840 are separated by 179 nucleotides MPMX19_00840 and MPMX19_00841 overlap by 4 nucleotides MPMX19_00841 and MPMX19_00842 overlap by 4 nucleotides
MPMX19_00838: MPMX19_00838 - GTP pyrophosphokinase rsh, at 869,987 to 872,146
_00838
MPMX19_00839: MPMX19_00839 - hypothetical protein, at 872,330 to 872,599
_00839
MPMX19_00840: MPMX19_00840 - Pyridoxine 5'-phosphate synthase, at 872,779 to 873,528
_00840
MPMX19_00841: MPMX19_00841 - Holo-[acyl-carrier-protein] synthase, at 873,525 to 874,004
_00841
MPMX19_00842: MPMX19_00842 - Signal peptidase I, at 874,001 to 874,768
_00842
Position (kb) 872
873
874 Strain fitness (log2 ratio) -2
-1
0
1
2 at 872.077 kb on + strand at 872.077 kb on + strand at 872.077 kb on + strand at 872.190 kb on + strand at 872.190 kb on + strand at 872.190 kb on + strand at 872.190 kb on + strand at 872.190 kb on + strand at 872.191 kb on - strand at 872.191 kb on - strand at 872.191 kb on - strand at 872.191 kb on - strand at 872.191 kb on - strand at 872.191 kb on - strand at 872.191 kb on - strand at 872.191 kb on - strand at 872.191 kb on - strand at 872.231 kb on - strand at 872.262 kb on + strand at 872.262 kb on + strand at 872.262 kb on + strand at 872.262 kb on + strand at 872.262 kb on + strand at 872.262 kb on + strand at 872.262 kb on + strand at 872.262 kb on + strand at 872.262 kb on + strand at 872.262 kb on + strand at 872.262 kb on + strand at 872.262 kb on + strand at 872.263 kb on - strand at 872.263 kb on - strand at 872.263 kb on - strand at 872.263 kb on - strand at 872.263 kb on - strand at 872.263 kb on - strand at 872.263 kb on - strand at 872.263 kb on - strand at 872.263 kb on - strand at 872.263 kb on - strand at 872.263 kb on - strand at 872.263 kb on - strand at 872.436 kb on - strand, within MPMX19_00839 at 872.567 kb on + strand, within MPMX19_00839 at 872.568 kb on - strand, within MPMX19_00839 at 872.568 kb on - strand, within MPMX19_00839 at 872.568 kb on - strand, within MPMX19_00839 at 872.598 kb on - strand at 872.598 kb on - strand at 872.658 kb on - strand at 872.658 kb on - strand at 872.658 kb on - strand at 872.720 kb on + strand at 872.720 kb on + strand at 872.720 kb on + strand at 872.720 kb on + strand at 872.720 kb on + strand at 872.720 kb on + strand at 872.720 kb on + strand at 872.720 kb on + strand at 872.720 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.722 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 872.724 kb on + strand at 873.118 kb on + strand, within MPMX19_00840 at 873.118 kb on + strand, within MPMX19_00840 at 873.118 kb on + strand, within MPMX19_00840 at 873.256 kb on + strand, within MPMX19_00840 at 873.256 kb on + strand, within MPMX19_00840 at 873.256 kb on + strand, within MPMX19_00840 at 873.370 kb on + strand, within MPMX19_00840 at 873.370 kb on + strand, within MPMX19_00840 at 873.370 kb on + strand, within MPMX19_00840 at 873.370 kb on + strand, within MPMX19_00840 at 873.370 kb on + strand, within MPMX19_00840 at 873.370 kb on + strand, within MPMX19_00840 at 873.705 kb on + strand, within MPMX19_00841 at 873.705 kb on + strand, within MPMX19_00841 at 873.705 kb on + strand, within MPMX19_00841 at 873.705 kb on + strand, within MPMX19_00841 at 873.705 kb on + strand, within MPMX19_00841 at 873.705 kb on + strand, within MPMX19_00841 at 873.912 kb on + strand, within MPMX19_00841
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 872,077 + -0.8 872,077 + -2.4 872,077 + -1.0 872,190 + -0.1 872,190 + -0.9 872,190 + -0.3 872,190 + -1.2 872,190 + +0.1 872,191 - -0.2 872,191 - -0.1 872,191 - -1.5 872,191 - -0.1 872,191 - -0.7 872,191 - +0.3 872,191 - +0.8 872,191 - -0.6 872,191 - -0.5 872,231 - -1.4 872,262 + -0.6 872,262 + -1.6 872,262 + +1.0 872,262 + -0.9 872,262 + -0.6 872,262 + -1.2 872,262 + -1.9 872,262 + -1.5 872,262 + +0.1 872,262 + +0.0 872,262 + +0.5 872,262 + -1.2 872,263 - +0.2 872,263 - -1.9 872,263 - -0.9 872,263 - +0.0 872,263 - -0.3 872,263 - -1.2 872,263 - -1.4 872,263 - -2.0 872,263 - -0.7 872,263 - -0.3 872,263 - +1.0 872,263 - -0.7 872,436 - MPMX19_00839 0.39 +0.0 872,567 + MPMX19_00839 0.88 +0.3 872,568 - MPMX19_00839 0.88 +0.9 872,568 - MPMX19_00839 0.88 +0.1 872,568 - MPMX19_00839 0.88 -0.1 872,598 - -1.2 872,598 - +1.3 872,658 - -0.8 872,658 - -1.1 872,658 - -1.0 872,720 + +0.0 872,720 + -0.3 872,720 + -1.6 872,720 + -1.3 872,720 + -1.9 872,720 + -1.4 872,720 + -1.4 872,720 + -1.6 872,720 + -1.6 872,722 + -1.0 872,722 + -2.2 872,722 + -0.3 872,722 + -2.6 872,722 + -0.7 872,722 + +0.2 872,722 + +1.5 872,722 + -0.3 872,722 + -1.6 872,722 + -0.6 872,722 + -2.3 872,722 + -1.1 872,722 + -0.5 872,722 + +1.0 872,722 + +0.5 872,722 + -1.5 872,722 + -1.5 872,722 + +2.0 872,724 + -0.6 872,724 + -0.8 872,724 + -0.8 872,724 + -0.3 872,724 + -0.3 872,724 + +0.4 872,724 + +0.0 872,724 + -0.7 872,724 + -1.3 872,724 + +0.7 872,724 + +0.4 872,724 + -0.4 872,724 + -0.7 872,724 + +0.0 872,724 + -1.0 872,724 + -1.0 872,724 + -0.7 873,118 + MPMX19_00840 0.45 -2.2 873,118 + MPMX19_00840 0.45 +0.6 873,118 + MPMX19_00840 0.45 +0.0 873,256 + MPMX19_00840 0.64 -1.3 873,256 + MPMX19_00840 0.64 -0.5 873,256 + MPMX19_00840 0.64 -0.3 873,370 + MPMX19_00840 0.79 +1.0 873,370 + MPMX19_00840 0.79 +0.5 873,370 + MPMX19_00840 0.79 +0.1 873,370 + MPMX19_00840 0.79 -0.8 873,370 + MPMX19_00840 0.79 +1.0 873,370 + MPMX19_00840 0.79 -0.6 873,705 + MPMX19_00841 0.38 -1.2 873,705 + MPMX19_00841 0.38 -1.6 873,705 + MPMX19_00841 0.38 -1.0 873,705 + MPMX19_00841 0.38 +1.0 873,705 + MPMX19_00841 0.38 -0.3 873,705 + MPMX19_00841 0.38 +0.0 873,912 + MPMX19_00841 0.81 -0.6
Or see this region's nucleotide sequence